{"id":"https://openalex.org/W4412708370","doi":"https://doi.org/10.1186/s12859-025-06191-4","title":"Accurate human genome analysis with element avidity sequencing","display_name":"Accurate human genome analysis with element avidity sequencing","publication_year":2025,"publication_date":"2025-07-25","ids":{"openalex":"https://openalex.org/W4412708370","doi":"https://doi.org/10.1186/s12859-025-06191-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/40713517"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-025-06191-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06191-4","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-025-06191-4.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-025-06191-4.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071154269","display_name":"Andrew Carroll","orcid":"https://orcid.org/0000-0002-4824-6689"},"institutions":[{"id":"https://openalex.org/I1291425158","display_name":"Google (United States)","ror":"https://ror.org/00njsd438","country_code":"US","type":"company","lineage":["https://openalex.org/I1291425158","https://openalex.org/I4210128969"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andrew Carroll","raw_affiliation_strings":["Google LLC, Mountain View, CA, USA. awcarroll@google.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Google LLC, Mountain View, CA, USA. awcarroll@google.com","institution_ids":["https://openalex.org/I1291425158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064885180","display_name":"Alexey Kolesnikov","orcid":"https://orcid.org/0000-0002-4761-4072"},"institutions":[{"id":"https://openalex.org/I1291425158","display_name":"Google (United States)","ror":"https://ror.org/00njsd438","country_code":"US","type":"company","lineage":["https://openalex.org/I1291425158","https://openalex.org/I4210128969"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexey Kolesnikov","raw_affiliation_strings":["Google LLC, Mountain View, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Google LLC, Mountain View, CA, USA","institution_ids":["https://openalex.org/I1291425158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039222783","display_name":"Daniel E. Cook","orcid":"https://orcid.org/0000-0003-3347-562X"},"institutions":[{"id":"https://openalex.org/I1291425158","display_name":"Google (United States)","ror":"https://ror.org/00njsd438","country_code":"US","type":"company","lineage":["https://openalex.org/I1291425158","https://openalex.org/I4210128969"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel E. Cook","raw_affiliation_strings":["Google LLC, Mountain View, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Google LLC, Mountain View, CA, USA","institution_ids":["https://openalex.org/I1291425158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061430995","display_name":"Lucas Brambrink","orcid":null},"institutions":[{"id":"https://openalex.org/I1291425158","display_name":"Google (United States)","ror":"https://ror.org/00njsd438","country_code":"US","type":"company","lineage":["https://openalex.org/I1291425158","https://openalex.org/I4210128969"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lucas Brambrink","raw_affiliation_strings":["Google LLC, Mountain View, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Google LLC, Mountain View, CA, USA","institution_ids":["https://openalex.org/I1291425158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092799082","display_name":"Kelly Wiseman","orcid":null},"institutions":[{"id":"https://openalex.org/I4387156142","display_name":"Elements Biosciences (United States)","ror":"https://ror.org/03pa16y14","country_code":null,"type":"company","lineage":["https://openalex.org/I4387156142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kelly N. Wiseman","raw_affiliation_strings":["Element Biosciences, San Diego, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Element Biosciences, San Diego, CA, USA","institution_ids":["https://openalex.org/I4387156142"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Sophie M. Billings","orcid":null},"institutions":[{"id":"https://openalex.org/I4387156142","display_name":"Elements Biosciences (United States)","ror":"https://ror.org/03pa16y14","country_code":null,"type":"company","lineage":["https://openalex.org/I4387156142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sophie M. Billings","raw_affiliation_strings":["Element Biosciences, San Diego, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Element Biosciences, San Diego, CA, USA","institution_ids":["https://openalex.org/I4387156142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017655612","display_name":"Semyon Kruglyak","orcid":"https://orcid.org/0000-0002-8353-1506"},"institutions":[{"id":"https://openalex.org/I4387156142","display_name":"Elements Biosciences (United States)","ror":"https://ror.org/03pa16y14","country_code":null,"type":"company","lineage":["https://openalex.org/I4387156142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Semyon Kruglyak","raw_affiliation_strings":["Element Biosciences, San Diego, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Element Biosciences, San Diego, CA, USA","institution_ids":["https://openalex.org/I4387156142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019642844","display_name":"Bryan R. Lajoie","orcid":"https://orcid.org/0000-0002-1895-8896"},"institutions":[{"id":"https://openalex.org/I4387156142","display_name":"Elements Biosciences (United States)","ror":"https://ror.org/03pa16y14","country_code":null,"type":"company","lineage":["https://openalex.org/I4387156142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan R. Lajoie","raw_affiliation_strings":["Element Biosciences, San Diego, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Element Biosciences, San Diego, CA, USA","institution_ids":["https://openalex.org/I4387156142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101676530","display_name":"Junhua Zhao","orcid":"https://orcid.org/0009-0006-7672-1084"},"institutions":[{"id":"https://openalex.org/I4387156142","display_name":"Elements Biosciences (United States)","ror":"https://ror.org/03pa16y14","country_code":null,"type":"company","lineage":["https://openalex.org/I4387156142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Junhua Zhao","raw_affiliation_strings":["Element Biosciences, San Diego, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Element Biosciences, San Diego, CA, USA","institution_ids":["https://openalex.org/I4387156142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034381224","display_name":"Shawn Levy","orcid":"https://orcid.org/0000-0002-1369-5740"},"institutions":[{"id":"https://openalex.org/I4387156142","display_name":"Elements Biosciences (United States)","ror":"https://ror.org/03pa16y14","country_code":null,"type":"company","lineage":["https://openalex.org/I4387156142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shawn E. Levy","raw_affiliation_strings":["Element Biosciences, San Diego, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Element Biosciences, San Diego, CA, USA","institution_ids":["https://openalex.org/I4387156142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021644000","display_name":"Cory Y. McLean","orcid":"https://orcid.org/0000-0001-9928-8216"},"institutions":[{"id":"https://openalex.org/I1291425158","display_name":"Google (United States)","ror":"https://ror.org/00njsd438","country_code":"US","type":"company","lineage":["https://openalex.org/I1291425158","https://openalex.org/I4210128969"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cory Y. McLean","raw_affiliation_strings":["Google LLC, Mountain View, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Google LLC, Mountain View, CA, USA","institution_ids":["https://openalex.org/I1291425158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079125341","display_name":"Kishwar Shafin","orcid":"https://orcid.org/0000-0001-5252-3434"},"institutions":[{"id":"https://openalex.org/I1291425158","display_name":"Google (United States)","ror":"https://ror.org/00njsd438","country_code":"US","type":"company","lineage":["https://openalex.org/I1291425158","https://openalex.org/I4210128969"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kishwar Shafin","raw_affiliation_strings":["Google LLC, Mountain View, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Google LLC, Mountain View, CA, USA","institution_ids":["https://openalex.org/I1291425158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072450167","display_name":"Maria Nattestad","orcid":"https://orcid.org/0000-0002-4796-2894"},"institutions":[{"id":"https://openalex.org/I1291425158","display_name":"Google (United States)","ror":"https://ror.org/00njsd438","country_code":"US","type":"company","lineage":["https://openalex.org/I1291425158","https://openalex.org/I4210128969"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maria Nattestad","raw_affiliation_strings":["Google LLC, Mountain View, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Google LLC, Mountain View, CA, USA","institution_ids":["https://openalex.org/I1291425158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056695196","display_name":"Pi-Chuan Chang","orcid":"https://orcid.org/0000-0003-3021-6446"},"institutions":[{"id":"https://openalex.org/I1291425158","display_name":"Google (United States)","ror":"https://ror.org/00njsd438","country_code":"US","type":"company","lineage":["https://openalex.org/I1291425158","https://openalex.org/I4210128969"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pi-Chuan Chang","raw_affiliation_strings":["Google LLC, Mountain View, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Google LLC, Mountain View, CA, USA","institution_ids":["https://openalex.org/I1291425158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5071154269"],"corresponding_institution_ids":["https://openalex.org/I1291425158"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.8446,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.90891074,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"26","issue":"1","first_page":"194","last_page":"194"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4332999885082245,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4332999885082245,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.32519999146461487,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.13940000534057617,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6767150163650513},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.5674282312393188},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5630455017089844},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5539070963859558},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5483355522155762},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4865078330039978},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.466635525226593},{"id":"https://openalex.org/keywords/avidity","display_name":"Avidity","score":0.438407838344574},{"id":"https://openalex.org/keywords/personal-genomics","display_name":"Personal genomics","score":0.4116186797618866},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.2415894865989685},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23142486810684204},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08434554934501648}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6767150163650513},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.5674282312393188},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5630455017089844},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5539070963859558},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5483355522155762},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4865078330039978},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.466635525226593},{"id":"https://openalex.org/C179223381","wikidata":"https://www.wikidata.org/wiki/Q419425","display_name":"Avidity","level":3,"score":0.438407838344574},{"id":"https://openalex.org/C24103923","wikidata":"https://www.wikidata.org/wiki/Q7170583","display_name":"Personal genomics","level":5,"score":0.4116186797618866},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.2415894865989685},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23142486810684204},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08434554934501648},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-025-06191-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06191-4","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-025-06191-4.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40713517","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40713517","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:87ef3a54d4034b79b7acca0640d7f450","is_oa":true,"landing_page_url":"https://doaj.org/article/87ef3a54d4034b79b7acca0640d7f450","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 26, Iss 1, Pp 1-12 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12291380","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12291380","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-025-06191-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06191-4","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-025-06191-4.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309327","display_name":"Google","ror":"https://ror.org/00njsd438"},{"id":"https://openalex.org/F4320332178","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412708370.pdf","grobid_xml":"https://content.openalex.org/works/W4412708370.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W2100772802","https://openalex.org/W2108234281","https://openalex.org/W2147733682","https://openalex.org/W2168133698","https://openalex.org/W2187181884","https://openalex.org/W2884441543","https://openalex.org/W2889664156","https://openalex.org/W2929354011","https://openalex.org/W2946343948","https://openalex.org/W2951331911","https://openalex.org/W2951529834","https://openalex.org/W2952870794","https://openalex.org/W2953263404","https://openalex.org/W2968499116","https://openalex.org/W3029661147","https://openalex.org/W3094909688","https://openalex.org/W3101189706","https://openalex.org/W3112181737","https://openalex.org/W3198016106","https://openalex.org/W4200597270","https://openalex.org/W4205511747","https://openalex.org/W4221001901","https://openalex.org/W4226151130","https://openalex.org/W4226474567","https://openalex.org/W4240204556","https://openalex.org/W4283210431","https://openalex.org/W4289836878","https://openalex.org/W4311849795","https://openalex.org/W4312212613","https://openalex.org/W4317659809","https://openalex.org/W4321460043","https://openalex.org/W4376133202","https://openalex.org/W4378212282","https://openalex.org/W4389224277","https://openalex.org/W4403366500"],"related_works":["https://openalex.org/W1979741542","https://openalex.org/W2169766923","https://openalex.org/W4238032041","https://openalex.org/W2000974906","https://openalex.org/W1974120093","https://openalex.org/W1978155433","https://openalex.org/W2410634280","https://openalex.org/W2339451948","https://openalex.org/W1577822803","https://openalex.org/W2522810657"],"abstract_inverted_index":{"BACKGROUND:":[0],"New":[1,184],"sequencing":[2,72,91,100,111,150,174,187],"technologies":[3,52,188],"provide":[4],"options":[5,18,88,185],"for":[6,53,57,186],"the":[7,33,47,70,80,84,87,113],"scientific":[8,81],"community":[9,82],"to":[10,45,78,89,109,146],"design":[11],"studies":[12],"and":[13,22,38,104,138],"build":[14],"clinical":[15],"workflows.":[16],"These":[17],"expand":[19],"user":[20],"choice,":[21],"can":[23,189],"enable":[24],"more":[25,176],"accurate,":[26],"scalable,":[27],"or":[28,63,193],"affordable":[29],"workflows":[30],"depending":[31],"on":[32],"fit":[34],"between":[35],"scientist":[36],"needs":[37],"platform":[39],"capability.":[40],"However,":[41],"it":[42],"is":[43],"essential":[44],"understand":[46,83],"performance":[48,85],"of":[49,86,128],"these":[50],"new":[51,71],"different":[54],"tasks,":[55],"especially":[56,135],"capabilities":[58],"that":[59,96,161],"were":[60],"not":[61],"possible":[62],"tractable":[64],"in":[65,136,166],"prior":[66,196],"technologies.":[67],"We":[68,94,123,142,159],"investigate":[69],"technology":[73],"avidity":[74],"from":[75],"Element":[76,97,129,173],"Biosciences.":[77],"help":[79],"generate":[90,147],"data.":[92],"RESULTS:":[93],"show":[95,160],"whole":[98],"genome":[99,178],"achieves":[101],"higher":[102,168],"mapping":[103],"variant":[105],"calling":[106],"accuracy":[107],"compared":[108],"Illumina":[110],"at":[112,119,180],"same":[114],"coverage,":[115],"with":[116,151,170],"larger":[117],"differences":[118],"lower":[120,132],"coverages":[121],"(20-30x).":[122],"quantify":[124],"base":[125],"error":[126,133],"rates":[127],"reads,":[130],"finding":[131],"rates,":[134],"homopolymer":[137],"tandem":[139],"repeat":[140],"regions.":[141],"use":[143],"Element's":[144],"ability":[145],"paired":[148],"end":[149],"longer":[152,162],"insert":[153,163,172],"sizes":[154,164],"than":[155,195],"typical":[156],"short-read":[157],"sequencing.":[158],"result":[165],"even":[167],"accuracy,":[169],"long":[171],"giving":[175],"accurate":[177],"analyses":[179],"all":[181],"coverages.":[182],"CONCLUSIONS:":[183],"analyze":[190],"genomes":[191],"comparably":[192],"better":[194],"standard":[197],"methods.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
