{"id":"https://openalex.org/W4412548301","doi":"https://doi.org/10.1186/s12859-025-06169-2","title":"LDA-SCGB: inferring lncRNA-disease associations based on condensed gradient boosting","display_name":"LDA-SCGB: inferring lncRNA-disease associations based on condensed gradient boosting","publication_year":2025,"publication_date":"2025-07-22","ids":{"openalex":"https://openalex.org/W4412548301","doi":"https://doi.org/10.1186/s12859-025-06169-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/40696287"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-025-06169-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06169-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06169-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06169-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043224798","display_name":"Chengqiu Dai","orcid":"https://orcid.org/0000-0003-3827-0607"},"institutions":[{"id":"https://openalex.org/I96478251","display_name":"Hunan Institute of Technology","ror":"https://ror.org/04n3k2k71","country_code":"CN","type":"education","lineage":["https://openalex.org/I96478251"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengqiu Dai","raw_affiliation_strings":["School of Computer Science and Engineering, Hunan Institute of Technology, Hengyang, 421002, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Hunan Institute of Technology, Hengyang, 421002, Hunan, China","institution_ids":["https://openalex.org/I96478251"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104078278","display_name":"Linna Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210130714","display_name":"Heilongjiang Provincial Hospital","ror":"https://ror.org/03qrkhd32","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210130714"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Linna Wang","raw_affiliation_strings":["The Sixth Department of Oncology, Beidahuang Industry Group General Hospital (Heilongjiang Second Cancer Hospital), Harbin, 150088, Heilongjiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Sixth Department of Oncology, Beidahuang Industry Group General Hospital (Heilongjiang Second Cancer Hospital), Harbin, 150088, Heilongjiang, China","institution_ids":["https://openalex.org/I4210130714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050039790","display_name":"Yingwei Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I96478251","display_name":"Hunan Institute of Technology","ror":"https://ror.org/04n3k2k71","country_code":"CN","type":"education","lineage":["https://openalex.org/I96478251"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingwei Deng","raw_affiliation_strings":["School of Computer Science and Engineering, Hunan Institute of Technology, Hengyang, 421002, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Hunan Institute of Technology, Hengyang, 421002, Hunan, China","institution_ids":["https://openalex.org/I96478251"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007908054","display_name":"Xuzhu Gao","orcid":"https://orcid.org/0000-0002-6744-1228"},"institutions":[{"id":"https://openalex.org/I4210094843","display_name":"Lianyungang Oriental Hospital","ror":"https://ror.org/00rkprb29","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210094843"]},{"id":"https://openalex.org/I4210129127","display_name":"The First People\u2019s Hospital of Lianyungang","ror":"https://ror.org/03617rq47","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210129127"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuzhu Gao","raw_affiliation_strings":["Department of Central Laboratory, Lianyungang Hospital Affiliated to Kangda College of Nanjing Medical University, Lianyungang, 222000, Jiangsu, China","Institute of Clinical Oncology, The Second People's Hospital of Lianyungang City (Cancer Hospital of Lianyungang), Lianyungang, 222000, Jiangsu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Central Laboratory, Lianyungang Hospital Affiliated to Kangda College of Nanjing Medical University, Lianyungang, 222000, Jiangsu, China","institution_ids":["https://openalex.org/I4210094843","https://openalex.org/I4210129127"]},{"raw_affiliation_string":"Institute of Clinical Oncology, The Second People's Hospital of Lianyungang City (Cancer Hospital of Lianyungang), Lianyungang, 222000, Jiangsu, China","institution_ids":["https://openalex.org/I4210129127"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100335721","display_name":"Jingyu Zhang","orcid":"https://orcid.org/0000-0001-6836-2225"},"institutions":[{"id":"https://openalex.org/I4210094843","display_name":"Lianyungang Oriental Hospital","ror":"https://ror.org/00rkprb29","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210094843"]},{"id":"https://openalex.org/I4210129127","display_name":"The First People\u2019s Hospital of Lianyungang","ror":"https://ror.org/03617rq47","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210129127"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jingyu Zhang","raw_affiliation_strings":["Department of Oncology, The Second People's Hospital of Lianyungang city (Cancer Hospital of Lianyungang), Lianyungang Hospital Affiliated to Kangda College of Nanjing Medical University, Lianyungang, 222000, Jiangsu, China. zhangjingyu@njmu.edu.cn","Department of Oncology, The Second People's Hospital of Lianyungang city (Cancer Hospital of Lianyungang), Lianyungang Hospital Affiliated to Kangda College of Nanjing Medical University, Lianyungang, 222000, Jiangsu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Oncology, The Second People's Hospital of Lianyungang city (Cancer Hospital of Lianyungang), Lianyungang Hospital Affiliated to Kangda College of Nanjing Medical University, Lianyungang, 222000, Jiangsu, China. zhangjingyu@njmu.edu.cn","institution_ids":["https://openalex.org/I4210094843","https://openalex.org/I4210129127"]},{"raw_affiliation_string":"Department of Oncology, The Second People's Hospital of Lianyungang city (Cancer Hospital of Lianyungang), Lianyungang Hospital Affiliated to Kangda College of Nanjing Medical University, Lianyungang, 222000, Jiangsu, China","institution_ids":["https://openalex.org/I4210129127"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100335721"],"corresponding_institution_ids":["https://openalex.org/I4210094843","https://openalex.org/I4210129127"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2790},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2790},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13983615,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"26","issue":"1","first_page":"190","last_page":"190"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/boosting","display_name":"Boosting (machine learning)","score":0.692951500415802},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5818317532539368},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5765657424926758},{"id":"https://openalex.org/keywords/gradient-boosting","display_name":"Gradient boosting","score":0.5175842046737671},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.49796557426452637},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4613829255104065},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4173712134361267},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.371643602848053},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3683311641216278},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2984065115451813},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.27351415157318115},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.16299396753311157},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.15177351236343384},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15002188086509705},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12700769305229187}],"concepts":[{"id":"https://openalex.org/C46686674","wikidata":"https://www.wikidata.org/wiki/Q466303","display_name":"Boosting (machine learning)","level":2,"score":0.692951500415802},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5818317532539368},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5765657424926758},{"id":"https://openalex.org/C70153297","wikidata":"https://www.wikidata.org/wiki/Q5591907","display_name":"Gradient boosting","level":3,"score":0.5175842046737671},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.49796557426452637},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4613829255104065},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4173712134361267},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.371643602848053},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3683311641216278},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2984065115451813},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.27351415157318115},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.16299396753311157},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.15177351236343384},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15002188086509705},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12700769305229187}],"mesh":[{"descriptor_ui":"D000077192","descriptor_name":"Adenocarcinoma of Lung","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000077192","descriptor_name":"Adenocarcinoma of Lung","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000077192","descriptor_name":"Adenocarcinoma of Lung","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000077192","descriptor_name":"Adenocarcinoma of Lung","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-025-06169-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06169-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06169-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40696287","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40696287","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:e401532295634b659fe3061de0439894","is_oa":true,"landing_page_url":"https://doaj.org/article/e401532295634b659fe3061de0439894","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 26, Iss 1, Pp 1-27 (2025)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:11093411","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12281771","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-025-06169-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06169-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06169-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412548301.pdf","grobid_xml":"https://content.openalex.org/works/W4412548301.grobid-xml"},"referenced_works_count":81,"referenced_works":["https://openalex.org/W611910056","https://openalex.org/W2039816251","https://openalex.org/W2055027431","https://openalex.org/W2115464628","https://openalex.org/W2128983843","https://openalex.org/W2152970345","https://openalex.org/W2408796111","https://openalex.org/W2462108616","https://openalex.org/W2488759133","https://openalex.org/W2761820591","https://openalex.org/W2772618228","https://openalex.org/W2781910076","https://openalex.org/W2801501532","https://openalex.org/W2802616725","https://openalex.org/W2890553545","https://openalex.org/W2918050559","https://openalex.org/W2947601703","https://openalex.org/W2952153265","https://openalex.org/W2966349991","https://openalex.org/W2967521176","https://openalex.org/W2969761002","https://openalex.org/W2970045605","https://openalex.org/W2984019107","https://openalex.org/W2987160931","https://openalex.org/W2997492439","https://openalex.org/W3003086109","https://openalex.org/W3003302501","https://openalex.org/W3006715646","https://openalex.org/W3014082018","https://openalex.org/W3020929333","https://openalex.org/W3026945747","https://openalex.org/W3045608202","https://openalex.org/W3047208451","https://openalex.org/W3081960698","https://openalex.org/W3115421736","https://openalex.org/W3116906693","https://openalex.org/W3134158868","https://openalex.org/W3162008062","https://openalex.org/W3185225911","https://openalex.org/W3187582009","https://openalex.org/W3192779557","https://openalex.org/W3196100602","https://openalex.org/W3198707249","https://openalex.org/W4200432712","https://openalex.org/W4205450773","https://openalex.org/W4205567020","https://openalex.org/W4210937888","https://openalex.org/W4213205106","https://openalex.org/W4213281931","https://openalex.org/W4225949800","https://openalex.org/W4280587098","https://openalex.org/W4283458035","https://openalex.org/W4285076853","https://openalex.org/W4297977888","https://openalex.org/W4307179617","https://openalex.org/W4307502334","https://openalex.org/W4307776422","https://openalex.org/W4308890651","https://openalex.org/W4311285804","https://openalex.org/W4311860121","https://openalex.org/W4312094035","https://openalex.org/W4313525616","https://openalex.org/W4379967792","https://openalex.org/W4380304062","https://openalex.org/W4385202087","https://openalex.org/W4385950553","https://openalex.org/W4388756595","https://openalex.org/W4389130251","https://openalex.org/W4389918314","https://openalex.org/W4390066222","https://openalex.org/W4390563851","https://openalex.org/W4390978706","https://openalex.org/W4392111029","https://openalex.org/W4392693790","https://openalex.org/W4394014430","https://openalex.org/W4394749617","https://openalex.org/W4396833369","https://openalex.org/W4403210286","https://openalex.org/W4406885099","https://openalex.org/W4407356329","https://openalex.org/W6816976379"],"related_works":["https://openalex.org/W2967733078","https://openalex.org/W3204430031","https://openalex.org/W3137904399","https://openalex.org/W4310492845","https://openalex.org/W2885778889","https://openalex.org/W4310224730","https://openalex.org/W4289703016","https://openalex.org/W2885516856","https://openalex.org/W3094138326","https://openalex.org/W1968832299"],"abstract_inverted_index":{"BACKGROUND:":[0],"Long":[1],"non-coding":[2],"RNAs":[3],"(lncRNAs)":[4],"play":[5],"essential":[6],"roles":[7],"in":[8,175],"various":[9],"physiological":[10],"and":[11,38,95,104,117,134,143,154,172,178],"pathological":[12],"processes.":[13],"Inferring":[14],"new":[15,33,52],"lncRNA-disease":[16,60,70,105],"associations":[17],"(LDAs)":[18],"not":[19],"only":[20],"promotes":[21],"us":[22],"to":[23,50,125],"better":[24],"understand":[25],"these":[26],"complex":[27,170],"biological":[28],"processes,":[29],"but":[30],"also":[31],"provides":[32],"options":[34],"for":[35,129,169],"the":[36,73,85],"diagnosis":[37,177],"prevention":[39],"of":[40,58,165],"diseases.":[41],"RESULTS:":[42],"A":[43],"novel":[44],"computational":[45],"model,":[46],"LDA-SCGB,":[47],"is":[48],"proposed":[49],"predict":[51],"LDAs.":[53],"LDA-SCGB":[54,82,121,162],"first":[55],"extracts":[56],"features":[57],"each":[59],"pair":[61],"with":[62,149],"singular":[63],"value":[64],"decomposition.":[65],"Next,":[66],"it":[67],"classifies":[68],"unknown":[69],"pairs":[71,106],"through":[72],"condensed":[74],"gradient":[75],"boosting":[76],"model.":[77],"The":[78,137],"results":[79,138],"demonstrated":[80,139],"that":[81,140,161],"greatly":[83],"outperformed":[84],"other":[86],"four":[87],"representative":[88],"LDA":[89,109],"inference":[90],"methods":[91],"(SDLDA,":[92],"LDNFSGB,":[93],"LDAenDL":[94],"LDASR)":[96],"under":[97],"5-fold":[98],"cross":[99],"validations":[100],"on":[101,107],"lncRNAs,":[102],"diseases,":[103],"three":[108],"datasets,":[110],"which":[111],"were":[112],"from":[113],"lncRNADisease":[114,118],"v2.0,":[115],"MNDR,":[116],"v3.0,":[119],"respectively.":[120,157],"was":[122,163],"further":[123,173],"used":[124],"find":[126],"potential":[127,167],"lncRNAs":[128,168],"colorectal":[130,150],"cancer,":[131,151],"heart":[132,152],"failure,":[133,153],"lung":[135,155],"adenocarcinoma.":[136],"CCDC26,":[141],"MIAT,":[142],"CCDC26":[144],"had":[145],"higher":[146],"association":[147],"probability":[148],"adenocarcinoma,":[156],"CONCLUSIONS:":[158],"We":[159],"foresee":[160],"capable":[164],"predicting":[166],"diseases":[171],"assisting":[174],"cancer":[176],"therapy.":[179]},"counts_by_year":[],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
