{"id":"https://openalex.org/W4410980708","doi":"https://doi.org/10.1186/s12859-025-06168-3","title":"Pytrf: a python package for finding tandem repeats from genomic sequences","display_name":"Pytrf: a python package for finding tandem repeats from genomic sequences","publication_year":2025,"publication_date":"2025-06-03","ids":{"openalex":"https://openalex.org/W4410980708","doi":"https://doi.org/10.1186/s12859-025-06168-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/40462000"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-025-06168-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06168-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06168-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06168-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110275547","display_name":"Lianming Du","orcid":"https://orcid.org/0000-0003-0646-0887"},"institutions":[{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lianming Du","raw_affiliation_strings":["Antibiotics Research and Re-Evaluation Key Laboratory of Sichuan Province, Institute for Advanced Study, Chengdu University, Chengdu, 610106, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Antibiotics Research and Re-Evaluation Key Laboratory of Sichuan Province, Institute for Advanced Study, Chengdu University, Chengdu, 610106, China","institution_ids":["https://openalex.org/I4210125143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050380450","display_name":"Dalin Sun","orcid":"https://orcid.org/0000-0002-5864-5771"},"institutions":[{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dalin Sun","raw_affiliation_strings":["Antibiotics Research and Re-Evaluation Key Laboratory of Sichuan Province, Institute for Advanced Study, Chengdu University, Chengdu, 610106, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Antibiotics Research and Re-Evaluation Key Laboratory of Sichuan Province, Institute for Advanced Study, Chengdu University, Chengdu, 610106, China","institution_ids":["https://openalex.org/I4210125143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103145150","display_name":"Jiahao Chen","orcid":"https://orcid.org/0000-0002-1515-2424"},"institutions":[{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiahao Chen","raw_affiliation_strings":["Antibiotics Research and Re-Evaluation Key Laboratory of Sichuan Province, Institute for Advanced Study, Chengdu University, Chengdu, 610106, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Antibiotics Research and Re-Evaluation Key Laboratory of Sichuan Province, Institute for Advanced Study, Chengdu University, Chengdu, 610106, China","institution_ids":["https://openalex.org/I4210125143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027605982","display_name":"Xinyi Zhou","orcid":"https://orcid.org/0000-0002-2862-7476"},"institutions":[{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinyi Zhou","raw_affiliation_strings":["Antibiotics Research and Re-Evaluation Key Laboratory of Sichuan Province, Institute for Advanced Study, Chengdu University, Chengdu, 610106, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Antibiotics Research and Re-Evaluation Key Laboratory of Sichuan Province, Institute for Advanced Study, Chengdu University, Chengdu, 610106, China","institution_ids":["https://openalex.org/I4210125143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074492756","display_name":"Kelei Zhao","orcid":"https://orcid.org/0000-0002-2515-065X"},"institutions":[{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kelei Zhao","raw_affiliation_strings":["Antibiotics Research and Re-Evaluation Key Laboratory of Sichuan Province, Institute for Advanced Study, Chengdu University, Chengdu, 610106, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Antibiotics Research and Re-Evaluation Key Laboratory of Sichuan Province, Institute for Advanced Study, Chengdu University, Chengdu, 610106, China","institution_ids":["https://openalex.org/I4210125143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031439625","display_name":"Qianglin Zeng","orcid":"https://orcid.org/0000-0002-1035-6911"},"institutions":[{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qianglin Zeng","raw_affiliation_strings":["Antibiotics Research and Re-Evaluation Key Laboratory of Sichuan Province, Institute for Advanced Study, Chengdu University, Chengdu, 610106, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Antibiotics Research and Re-Evaluation Key Laboratory of Sichuan Province, Institute for Advanced Study, Chengdu University, Chengdu, 610106, China","institution_ids":["https://openalex.org/I4210125143"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084846015","display_name":"Nan Yang","orcid":"https://orcid.org/0000-0003-3663-1288"},"institutions":[{"id":"https://openalex.org/I6645349","display_name":"Southwest Minzu University","ror":"https://ror.org/04gaexw88","country_code":"CN","type":"education","lineage":["https://openalex.org/I6645349"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Nan Yang","raw_affiliation_strings":["Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Utilization, Sichuan Province and Ministry of Education, Southwest Minzu University, Chengdu, 610225, China. yangnan0204@126.com","Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Utilization, Sichuan Province and Ministry of Education, Southwest Minzu University, Chengdu, 610225, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Utilization, Sichuan Province and Ministry of Education, Southwest Minzu University, Chengdu, 610225, China. yangnan0204@126.com","institution_ids":[]},{"raw_affiliation_string":"Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Utilization, Sichuan Province and Ministry of Education, Southwest Minzu University, Chengdu, 610225, China","institution_ids":["https://openalex.org/I6645349"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5084846015"],"corresponding_institution_ids":["https://openalex.org/I6645349"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.3208,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.87961677,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"26","issue":"1","first_page":"151","last_page":"151"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.9002000093460083,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.9002000093460083,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.021900000050663948,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.012000000104308128,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7671713829040527},{"id":"https://openalex.org/keywords/tandem-repeat","display_name":"Tandem repeat","score":0.6442360281944275},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5807168483734131},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5045870542526245},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4863050878047943},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48528334498405457},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4610788822174072},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.43886786699295044},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4235544204711914},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.22389400005340576},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0915188193321228}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7671713829040527},{"id":"https://openalex.org/C27149982","wikidata":"https://www.wikidata.org/wiki/Q3456514","display_name":"Tandem repeat","level":4,"score":0.6442360281944275},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5807168483734131},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5045870542526245},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4863050878047943},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48528334498405457},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4610788822174072},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.43886786699295044},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4235544204711914},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.22389400005340576},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0915188193321228},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-025-06168-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06168-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06168-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40462000","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40462000","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:2a64530d540749e8b1abcef2ccf51f9c","is_oa":true,"landing_page_url":"https://doaj.org/article/2a64530d540749e8b1abcef2ccf51f9c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 26, Iss 1, Pp 1-8 (2025)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:10949051","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12135533","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-025-06168-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06168-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06168-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5545559694","display_name":null,"funder_award_id":"32200525","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410980708.pdf","grobid_xml":"https://content.openalex.org/works/W4410980708.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1991762134","https://openalex.org/W2038926630","https://openalex.org/W2039752257","https://openalex.org/W2106263380","https://openalex.org/W2112814753","https://openalex.org/W2133429876","https://openalex.org/W2150641734","https://openalex.org/W2158148243","https://openalex.org/W2167084861","https://openalex.org/W2518998933","https://openalex.org/W2605276928","https://openalex.org/W2751152975","https://openalex.org/W2766763339","https://openalex.org/W2767665981","https://openalex.org/W2786119759","https://openalex.org/W2905502650","https://openalex.org/W2950199265","https://openalex.org/W2979374623","https://openalex.org/W3044594590","https://openalex.org/W3047646629","https://openalex.org/W3117723450","https://openalex.org/W3119240720","https://openalex.org/W3135083829","https://openalex.org/W3159008141","https://openalex.org/W3167895074","https://openalex.org/W3183451325","https://openalex.org/W3201241385","https://openalex.org/W4310964066","https://openalex.org/W4311472685","https://openalex.org/W4322505638","https://openalex.org/W4327892846","https://openalex.org/W4361018337","https://openalex.org/W4363672366","https://openalex.org/W4386745658","https://openalex.org/W4386917535","https://openalex.org/W4387893742","https://openalex.org/W4393222201","https://openalex.org/W4403242163"],"related_works":["https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W2207495067","https://openalex.org/W1906486629","https://openalex.org/W4401016539","https://openalex.org/W4400651710","https://openalex.org/W4406202791","https://openalex.org/W4405093211","https://openalex.org/W4403672447"],"abstract_inverted_index":{"BACKGROUND:":[0],"Tandem":[1],"repeats":[2,108,146],"(TRs)":[3],"are":[4,16],"major":[5],"sources":[6],"of":[7,39,68,124,144],"genetic":[8,12],"variation":[9],"and":[10,32,71,93,137,160],"important":[11],"markers.":[13],"Their":[14],"expansions":[15],"not":[17],"only":[18],"involved":[19],"in":[20,89,122],"gene":[21],"expression":[22],"regulation":[23],"but":[24],"also":[25,97],"associated":[26],"with":[27,49,54,127],"many":[28],"nervous":[29],"system":[30],"diseases":[31],"cancers.":[33],"However,":[34],"there":[35],"is":[36,164],"a":[37,63],"lack":[38],"an":[40],"efficient":[41],"tandem":[42,107,145],"repeat":[43],"identification":[44,67,143],"tool":[45],"for":[46,66,102],"seamless":[47,79],"integration":[48],"larger":[50],"bioinformatics":[51],"programs":[52,83],"developed":[53,84],"the":[55,116,119,161],"popular":[56],"Python":[57,64,86,90],"language.":[58],"RESULTS:":[59],"We":[60],"introduce":[61],"pytrf,":[62],"package":[65],"both":[69],"exact":[70],"approximate":[72],"TRs":[73],"from":[74,109,147,155],"genomic":[75,148],"sequences.":[76,149],"It":[77,96],"allows":[78],"embedding":[80],"into":[81],"other":[82,114],"by":[85],"or":[87],"using":[88],"interactive":[91],"environment":[92],"Jupyter":[94],"notebooks.":[95],"provides":[98,134],"command":[99,138],"line":[100,139],"tools":[101,140],"assisting":[103],"users":[104],"to":[105,113,141],"find":[106],"FASTA/Q":[110],"files.":[111],"Compared":[112],"tools,":[115],"pytrf":[117],"shows":[118],"highest":[120],"performance":[121],"aspect":[123],"running":[125],"time":[126],"comparable":[128],"peak":[129],"memory":[130],"usage.":[131],"CONCLUSIONS:":[132],"Pytrf":[133,150],"simple":[135],"interfaces":[136],"facilitate":[142],"can":[151],"easily":[152],"be":[153],"installed":[154],"PyPI":[156],"(":[157],"https://pypi.org/project/pytrf":[158],")":[159],"source":[162],"code":[163],"freely":[165],"available":[166],"at":[167],"https://github.com/lmdu/pytrf":[168],".":[169]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
