{"id":"https://openalex.org/W4412154277","doi":"https://doi.org/10.1186/s12859-025-06167-4","title":"EDRMM: enhancing drug recommendation via multi-granularity and multi-attribute representation","display_name":"EDRMM: enhancing drug recommendation via multi-granularity and multi-attribute representation","publication_year":2025,"publication_date":"2025-07-10","ids":{"openalex":"https://openalex.org/W4412154277","doi":"https://doi.org/10.1186/s12859-025-06167-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/40640719"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-025-06167-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06167-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06167-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06167-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103326399","display_name":"Feiyan Liu","orcid":"https://orcid.org/0009-0006-8277-6380"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Feiyan Liu","raw_affiliation_strings":["School of Informatics, Xiamen University, Xiamen, 361000, Fujian, China"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, 361000, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100390316","display_name":"Wenhao Wang","orcid":"https://orcid.org/0000-0002-7015-9047"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I29739308","display_name":"Guangxi Normal University","ror":"https://ror.org/02frt9q65","country_code":"CN","type":"education","lineage":["https://openalex.org/I29739308"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenhao Wang","raw_affiliation_strings":["School of Computer Science and Engineering, Guangxi Normal University, Guilin, 541004, Guangxi, China","School of Informatics, Xiamen University, Xiamen, 361000, Fujian, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Guangxi Normal University, Guilin, 541004, Guangxi, China","institution_ids":["https://openalex.org/I29739308"]},{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, 361000, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030174547","display_name":"Jiawei Zheng","orcid":"https://orcid.org/0000-0001-6599-6070"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiawei Zheng","raw_affiliation_strings":["School of Informatics, Xiamen University, Xiamen, 361000, Fujian, China"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, 361000, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027667056","display_name":"Yibo Xie","orcid":"https://orcid.org/0009-0008-3651-654X"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yibo Xie","raw_affiliation_strings":["School of Informatics, Xiamen University, Xiamen, 361000, Fujian, China"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, 361000, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100456908","display_name":"Xiaoli Wang","orcid":"https://orcid.org/0000-0002-7198-273X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xiaoli Wang","raw_affiliation_strings":["School of Informatics, Xiamen University, Xiamen, 361000, Fujian, China. xlwang@xmu.edu.cn"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, 361000, Fujian, China. xlwang@xmu.edu.cn","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111607095","display_name":"Dongxiang Zhang","orcid":"https://orcid.org/0000-0001-7924-956X"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dongxiang Zhang","raw_affiliation_strings":["College of Computer Science and Technology, Zhejiang University, Hangzhou, 310027, Zhejiang, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Zhejiang University, Hangzhou, 310027, Zhejiang, China","institution_ids":["https://openalex.org/I168879160"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5103326399"],"corresponding_institution_ids":["https://openalex.org/I191208505"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":10.6838,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.97950175,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"26","issue":"1","first_page":"173","last_page":"173"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11396","display_name":"Artificial Intelligence in Healthcare","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/granularity","display_name":"Granularity","score":0.8418449759483337},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6945974826812744},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6013302206993103},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.495008647441864},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.49031737446784973},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41578465700149536},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40066394209861755},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3725600242614746},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13861772418022156},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10308778285980225},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09481510519981384},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.09168964624404907},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07521060109138489},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.061987876892089844}],"concepts":[{"id":"https://openalex.org/C177774035","wikidata":"https://www.wikidata.org/wiki/Q1246948","display_name":"Granularity","level":2,"score":0.8418449759483337},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6945974826812744},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6013302206993103},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.495008647441864},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.49031737446784973},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41578465700149536},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40066394209861755},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3725600242614746},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13861772418022156},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10308778285980225},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09481510519981384},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.09168964624404907},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07521060109138489},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.061987876892089844},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-025-06167-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06167-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06167-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40640719","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40640719","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:37b8bc187c7d4096bea681dd35bb5c40","is_oa":true,"landing_page_url":"https://doaj.org/article/37b8bc187c7d4096bea681dd35bb5c40","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 26, Iss 1, Pp 1-24 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12243427","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12243427","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-025-06167-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06167-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06167-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412154277.pdf","grobid_xml":"https://content.openalex.org/works/W4412154277.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W2022476850","https://openalex.org/W2119002393","https://openalex.org/W2131774270","https://openalex.org/W2396881363","https://openalex.org/W2525984666","https://openalex.org/W2607357445","https://openalex.org/W2744140371","https://openalex.org/W2894384847","https://openalex.org/W2964068143","https://openalex.org/W3031989616","https://openalex.org/W3040868855","https://openalex.org/W3041085747","https://openalex.org/W3095883070","https://openalex.org/W3098465726","https://openalex.org/W3111386522","https://openalex.org/W3157889929","https://openalex.org/W3187287398","https://openalex.org/W4220894606","https://openalex.org/W4290927771","https://openalex.org/W4306317623","https://openalex.org/W4367047209","https://openalex.org/W4387145972","https://openalex.org/W4393159219","https://openalex.org/W4402731098","https://openalex.org/W6921767124"],"related_works":["https://openalex.org/W2931688134","https://openalex.org/W2377919138","https://openalex.org/W2378857091","https://openalex.org/W103652678","https://openalex.org/W4226090359","https://openalex.org/W2059697060","https://openalex.org/W936373746","https://openalex.org/W2975817033","https://openalex.org/W4256502920","https://openalex.org/W2354431794"],"abstract_inverted_index":{"EDRMM":[0,59],"overcomes":[1],"two":[2],"key":[3],"drug":[4],"recommendation":[5,64],"limitations":[6],"through":[7],"three":[8,54],"innovations:":[9],"(1)":[10],"Dynamic":[11],"attribute-level":[12],"history":[13],"selection,":[14],"which":[15],"retrieves":[16],"relevant":[17],"features":[18],"and":[19,38,44],"filters":[20],"out":[21],"noise,":[22],"(2)":[23],"The":[24,50],"integration":[25],"of":[26,52],"multi-attribute":[27],"EHR":[28],"with":[29],"attribute-specific":[30],"encoding":[31],"strategies":[32],"to":[33,60],"generate":[34],"comprehensive":[35],"patient":[36],"representations,":[37],"(3)":[39],"Hybrid":[40],"optimization":[41],"balancing":[42],"accuracy":[43],"safety":[45],"via":[46],"adaptive":[47],"DDI":[48],"regularization.":[49],"combination":[51],"these":[53],"innovations":[55],"enables":[56],"the":[57,62,67],"proposed":[58],"achieve":[61],"best":[63],"performance":[65],"on":[66],"MIMIC-III":[68],"dataset.":[69]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-03-17T17:19:04.345684","created_date":"2025-10-10T00:00:00"}
