{"id":"https://openalex.org/W4409181371","doi":"https://doi.org/10.1186/s12859-025-06109-0","title":"Goistrat: gene-of-interest-based sample stratification for the evaluation of functional differences","display_name":"Goistrat: gene-of-interest-based sample stratification for the evaluation of functional differences","publication_year":2025,"publication_date":"2025-04-05","ids":{"openalex":"https://openalex.org/W4409181371","doi":"https://doi.org/10.1186/s12859-025-06109-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/40188042"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-025-06109-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06109-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06109-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06109-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033187759","display_name":"Carlos Uziel P\u00e9rez Malla","orcid":"https://orcid.org/0000-0003-0057-3223"},"institutions":[{"id":"https://openalex.org/I4210141240","display_name":"Ludwig Boltzmann Institute Applied Diagnostics","ror":"https://ror.org/03gjxds17","country_code":"AT","type":"facility","lineage":["https://openalex.org/I2799334681","https://openalex.org/I4210141240"]},{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]},{"id":"https://openalex.org/I2799334681","display_name":"Ludwig Boltzmann Gesellschaft","ror":"https://ror.org/01v1jam04","country_code":"AT","type":"facility","lineage":["https://openalex.org/I2799334681"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Carlos Uziel P\u00e9rez Malla","raw_affiliation_strings":["Department of Pathology, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","Ludwig Boltzmann Institute Applied Diagnostics, Ludwig Boltzmann Gesellschaft, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","institution_ids":["https://openalex.org/I76134821"]},{"raw_affiliation_string":"Ludwig Boltzmann Institute Applied Diagnostics, Ludwig Boltzmann Gesellschaft, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","institution_ids":["https://openalex.org/I2799334681","https://openalex.org/I4210141240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007369290","display_name":"Jessica Kalla","orcid":"https://orcid.org/0000-0002-0196-4659"},"institutions":[{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Jessica Kalla","raw_affiliation_strings":["Department of Pathology, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","institution_ids":["https://openalex.org/I76134821"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075495702","display_name":"Andreas Tiefenbacher","orcid":"https://orcid.org/0000-0001-7410-6164"},"institutions":[{"id":"https://openalex.org/I4210092129","display_name":"Comprehensive Cancer Center Vienna","ror":"https://ror.org/00df3z122","country_code":"AT","type":"healthcare","lineage":["https://openalex.org/I2802328216","https://openalex.org/I4210092129"]},{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Andreas Tiefenbacher","raw_affiliation_strings":["Comprehensive Cancer Center, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","Department of Pathology, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria"],"affiliations":[{"raw_affiliation_string":"Comprehensive Cancer Center, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","institution_ids":["https://openalex.org/I4210092129"]},{"raw_affiliation_string":"Department of Pathology, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","institution_ids":["https://openalex.org/I76134821"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010922275","display_name":"Gabriel Wasinger","orcid":"https://orcid.org/0000-0002-0323-7180"},"institutions":[{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Gabriel Wasinger","raw_affiliation_strings":["Department of Pathology, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","institution_ids":["https://openalex.org/I76134821"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040033311","display_name":"Kilian Kluge","orcid":"https://orcid.org/0000-0002-4224-7314"},"institutions":[{"id":"https://openalex.org/I4210105054","display_name":"Christian Doppler Laboratory for Thermoelectricity","ror":"https://ror.org/01cbw5x35","country_code":"AT","type":"facility","lineage":["https://openalex.org/I129774422","https://openalex.org/I145847075","https://openalex.org/I4210105054"]},{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Kilian Kluge","raw_affiliation_strings":["Christian Doppler Laboratory for Applied Metabolomics, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","Department of Biomedical Imaging and Image-Guided Therapy, Division of Nuclear Medicine, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","Department of Pathology, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria"],"affiliations":[{"raw_affiliation_string":"Christian Doppler Laboratory for Applied Metabolomics, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","institution_ids":["https://openalex.org/I4210105054","https://openalex.org/I76134821"]},{"raw_affiliation_string":"Department of Biomedical Imaging and Image-Guided Therapy, Division of Nuclear Medicine, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","institution_ids":["https://openalex.org/I76134821"]},{"raw_affiliation_string":"Department of Pathology, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","institution_ids":["https://openalex.org/I76134821"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072260744","display_name":"Gerda Egger","orcid":"https://orcid.org/0000-0003-2489-155X"},"institutions":[{"id":"https://openalex.org/I2799334681","display_name":"Ludwig Boltzmann Gesellschaft","ror":"https://ror.org/01v1jam04","country_code":"AT","type":"facility","lineage":["https://openalex.org/I2799334681"]},{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]},{"id":"https://openalex.org/I4210141240","display_name":"Ludwig Boltzmann Institute Applied Diagnostics","ror":"https://ror.org/03gjxds17","country_code":"AT","type":"facility","lineage":["https://openalex.org/I2799334681","https://openalex.org/I4210141240"]},{"id":"https://openalex.org/I4210092129","display_name":"Comprehensive Cancer Center Vienna","ror":"https://ror.org/00df3z122","country_code":"AT","type":"healthcare","lineage":["https://openalex.org/I2802328216","https://openalex.org/I4210092129"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Gerda Egger","raw_affiliation_strings":["Comprehensive Cancer Center, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","Department of Pathology, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","Ludwig Boltzmann Institute Applied Diagnostics, Ludwig Boltzmann Gesellschaft, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria"],"affiliations":[{"raw_affiliation_string":"Comprehensive Cancer Center, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","institution_ids":["https://openalex.org/I4210092129"]},{"raw_affiliation_string":"Department of Pathology, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","institution_ids":["https://openalex.org/I76134821"]},{"raw_affiliation_string":"Ludwig Boltzmann Institute Applied Diagnostics, Ludwig Boltzmann Gesellschaft, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria","institution_ids":["https://openalex.org/I2799334681","https://openalex.org/I4210141240"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060228094","display_name":"Raheleh Sheibani\u2010Tezerji","orcid":"https://orcid.org/0000-0002-1025-646X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Raheleh Sheibani-Tezerji","raw_affiliation_strings":["Comprehensive Cancer Center, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria. raheleh.sheibani-tezerji@meduniwien.ac.at","Department of Pathology, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria. raheleh.sheibani-tezerji@meduniwien.ac.at","Ludwig Boltzmann Institute Applied Diagnostics, Ludwig Boltzmann Gesellschaft, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria. raheleh.sheibani-tezerji@meduniwien.ac.at"],"affiliations":[{"raw_affiliation_string":"Comprehensive Cancer Center, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria. raheleh.sheibani-tezerji@meduniwien.ac.at","institution_ids":[]},{"raw_affiliation_string":"Department of Pathology, Medical University of Vienna, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria. raheleh.sheibani-tezerji@meduniwien.ac.at","institution_ids":[]},{"raw_affiliation_string":"Ludwig Boltzmann Institute Applied Diagnostics, Ludwig Boltzmann Gesellschaft, W\u00e4hringer G\u00fcrtel 18-20, Vienna, 1090, Austria. raheleh.sheibani-tezerji@meduniwien.ac.at","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5033187759"],"corresponding_institution_ids":["https://openalex.org/I2799334681","https://openalex.org/I4210141240","https://openalex.org/I76134821"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10304844,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"26","issue":"1","first_page":"97","last_page":"97"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10543","display_name":"Prostate Cancer Treatment and Research","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10543","display_name":"Prostate Cancer Treatment and Research","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12465","display_name":"Cancer, Lipids, and Metabolism","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.587079644203186},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5818904638290405},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5184309482574463},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.49816012382507324},{"id":"https://openalex.org/keywords/prostate-cancer","display_name":"Prostate cancer","score":0.4538532495498657},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.42414364218711853},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4225451350212097},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4048483967781067},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3868647813796997},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3332088589668274},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.25248196721076965},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16102394461631775},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11396867036819458}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.587079644203186},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5818904638290405},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5184309482574463},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49816012382507324},{"id":"https://openalex.org/C2780192828","wikidata":"https://www.wikidata.org/wiki/Q181257","display_name":"Prostate cancer","level":3,"score":0.4538532495498657},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.42414364218711853},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4225451350212097},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4048483967781067},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3868647813796997},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3332088589668274},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.25248196721076965},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16102394461631775},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11396867036819458}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-025-06109-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06109-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06109-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40188042","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40188042","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:b2ad90c1d50d4c6aa133f0f73fd87a14","is_oa":true,"landing_page_url":"https://doaj.org/article/b2ad90c1d50d4c6aa133f0f73fd87a14","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 26, Iss 1, Pp 1-24 (2025)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:10784868","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11971790","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-025-06109-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06109-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06109-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5199999809265137,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2010599502","display_name":null,"funder_award_id":"P32771","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"},{"id":"https://openalex.org/G8161337274","display_name":null,"funder_award_id":"32771","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"}],"funders":[{"id":"https://openalex.org/F4320321181","display_name":"Austrian Science Fund","ror":"https://ror.org/013tf3c58"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4409181371.pdf","grobid_xml":"https://content.openalex.org/works/W4409181371.grobid-xml"},"referenced_works_count":87,"referenced_works":["https://openalex.org/W1578291413","https://openalex.org/W1653658786","https://openalex.org/W1673310716","https://openalex.org/W1812256879","https://openalex.org/W1831442001","https://openalex.org/W1848939527","https://openalex.org/W1907349304","https://openalex.org/W1986241711","https://openalex.org/W1987971958","https://openalex.org/W1993812419","https://openalex.org/W1998469587","https://openalex.org/W2010457001","https://openalex.org/W2018838463","https://openalex.org/W2026866722","https://openalex.org/W2035618305","https://openalex.org/W2041440766","https://openalex.org/W2044702943","https://openalex.org/W2096283457","https://openalex.org/W2097255042","https://openalex.org/W2101870168","https://openalex.org/W2104669585","https://openalex.org/W2107363136","https://openalex.org/W2110065044","https://openalex.org/W2130410032","https://openalex.org/W2132619562","https://openalex.org/W2133465414","https://openalex.org/W2146040216","https://openalex.org/W2146512944","https://openalex.org/W2150194502","https://openalex.org/W2151365262","https://openalex.org/W2158485828","https://openalex.org/W2159707944","https://openalex.org/W2161112598","https://openalex.org/W2165992619","https://openalex.org/W2180481128","https://openalex.org/W2214074259","https://openalex.org/W2259802687","https://openalex.org/W2275877493","https://openalex.org/W2301278286","https://openalex.org/W2335012284","https://openalex.org/W2366310831","https://openalex.org/W2470213520","https://openalex.org/W2524354109","https://openalex.org/W2531194180","https://openalex.org/W2582729774","https://openalex.org/W2595075592","https://openalex.org/W2727380696","https://openalex.org/W2746256337","https://openalex.org/W2750790860","https://openalex.org/W2767440906","https://openalex.org/W2769219206","https://openalex.org/W2786843484","https://openalex.org/W2786987313","https://openalex.org/W2793955708","https://openalex.org/W2807716198","https://openalex.org/W2809498447","https://openalex.org/W2884001931","https://openalex.org/W2889483924","https://openalex.org/W2897704361","https://openalex.org/W2897815318","https://openalex.org/W2900864487","https://openalex.org/W2903203652","https://openalex.org/W2922140746","https://openalex.org/W2922394097","https://openalex.org/W2934848272","https://openalex.org/W2950316503","https://openalex.org/W2962756421","https://openalex.org/W2982898617","https://openalex.org/W3003458324","https://openalex.org/W3037348089","https://openalex.org/W3041912701","https://openalex.org/W3042363138","https://openalex.org/W3088521497","https://openalex.org/W3094495363","https://openalex.org/W3097386258","https://openalex.org/W3097629227","https://openalex.org/W3107527779","https://openalex.org/W3127404219","https://openalex.org/W3151163502","https://openalex.org/W3163408842","https://openalex.org/W3168432495","https://openalex.org/W3173779735","https://openalex.org/W4221076584","https://openalex.org/W4239014386","https://openalex.org/W4283070818","https://openalex.org/W4324136716","https://openalex.org/W4385780674"],"related_works":["https://openalex.org/W2069695727","https://openalex.org/W1996185163","https://openalex.org/W2084813257","https://openalex.org/W2043690326","https://openalex.org/W2045929470","https://openalex.org/W4233500668","https://openalex.org/W2081127504","https://openalex.org/W1974145978","https://openalex.org/W1977867163","https://openalex.org/W3984577"],"abstract_inverted_index":{"Our":[0],"comprehensive":[1],"approach":[2,21],"provides":[3],"a":[4,23,35],"novel":[5],"tool":[6],"to":[7],"identify":[8],"disease-relevant":[9],"functions":[10],"of":[11,13,30,34],"genes":[12],"interest":[14],"(GOI)":[15],"in":[16,37],"large":[17],"datasets.":[18],"This":[19],"integrated":[20],"offers":[22],"valuable":[24],"framework":[25],"for":[26,41],"understanding":[27],"the":[28,31],"role":[29],"expression":[32],"variation":[33],"GOI":[36],"complex":[38],"diseases":[39],"and":[40],"informing":[42],"on":[43],"targeted":[44],"therapeutic":[45],"strategies.":[46]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
