{"id":"https://openalex.org/W4407964928","doi":"https://doi.org/10.1186/s12859-025-06084-6","title":"Combining single-cell ATAC and RNA sequencing for supervised cell annotation","display_name":"Combining single-cell ATAC and RNA sequencing for supervised cell annotation","publication_year":2025,"publication_date":"2025-02-26","ids":{"openalex":"https://openalex.org/W4407964928","doi":"https://doi.org/10.1186/s12859-025-06084-6","pmid":"https://pubmed.ncbi.nlm.nih.gov/40011801"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-025-06084-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06084-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06084-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06084-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109694593","display_name":"Jaidip Gill","orcid":null},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jaidip Gill","raw_affiliation_strings":["School of Public Health, Imperial College London, London, England"],"affiliations":[{"raw_affiliation_string":"School of Public Health, Imperial College London, London, England","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055196811","display_name":"Abhijit Dasgupta","orcid":"https://orcid.org/0000-0001-6062-9896"},"institutions":[{"id":"https://openalex.org/I4210150756","display_name":"AstraZeneca (United States)","ror":"https://ror.org/043cec594","country_code":"US","type":"company","lineage":["https://openalex.org/I105036370","https://openalex.org/I4210150756"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abhijit Dasgupta","raw_affiliation_strings":["Oncology Data Science, AstraZeneca, Gaithersburg, MD, USA"],"affiliations":[{"raw_affiliation_string":"Oncology Data Science, AstraZeneca, Gaithersburg, MD, USA","institution_ids":["https://openalex.org/I4210150756"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081638749","display_name":"Brychan Manry","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150756","display_name":"AstraZeneca (United States)","ror":"https://ror.org/043cec594","country_code":"US","type":"company","lineage":["https://openalex.org/I105036370","https://openalex.org/I4210150756"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brychan Manry","raw_affiliation_strings":["Oncology Data Science, AstraZeneca, Gaithersburg, MD, USA"],"affiliations":[{"raw_affiliation_string":"Oncology Data Science, AstraZeneca, Gaithersburg, MD, USA","institution_ids":["https://openalex.org/I4210150756"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013935700","display_name":"Natasha Markuzon","orcid":"https://orcid.org/0009-0007-4926-3871"},"institutions":[{"id":"https://openalex.org/I4210150756","display_name":"AstraZeneca (United States)","ror":"https://ror.org/043cec594","country_code":"US","type":"company","lineage":["https://openalex.org/I105036370","https://openalex.org/I4210150756"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Natasha Markuzon","raw_affiliation_strings":["Oncology Data Science, AstraZeneca, Waltham, MA, USA. natasha.markuzon@astrazeneca.com","Oncology Data Science, AstraZeneca, Waltham, MA, USA"],"affiliations":[{"raw_affiliation_string":"Oncology Data Science, AstraZeneca, Waltham, MA, USA. natasha.markuzon@astrazeneca.com","institution_ids":[]},{"raw_affiliation_string":"Oncology Data Science, AstraZeneca, Waltham, MA, USA","institution_ids":["https://openalex.org/I4210150756"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5013935700"],"corresponding_institution_ids":["https://openalex.org/I4210150756"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7412,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.67970281,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"26","issue":"1","first_page":"67","last_page":"67"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10773","display_name":"Extracellular vesicles in disease","score":0.9764000177383423,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9724000096321106,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6036660671234131},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5979477167129517},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.585782527923584},{"id":"https://openalex.org/keywords/single-cell-analysis","display_name":"Single-cell analysis","score":0.5083011984825134},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.4648550748825073},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.43504905700683594},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.410581111907959},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.379765123128891},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.27191975712776184},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2703423500061035},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18177056312561035},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.16737902164459229}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6036660671234131},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5979477167129517},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.585782527923584},{"id":"https://openalex.org/C2776950831","wikidata":"https://www.wikidata.org/wiki/Q15635432","display_name":"Single-cell analysis","level":3,"score":0.5083011984825134},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.4648550748825073},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.43504905700683594},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.410581111907959},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.379765123128891},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.27191975712776184},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2703423500061035},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18177056312561035},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.16737902164459229}],"mesh":[{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007963","descriptor_name":"Leukocytes, Mononuclear","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":true},{"descriptor_ui":"D007963","descriptor_name":"Leukocytes, Mononuclear","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":true},{"descriptor_ui":"D007963","descriptor_name":"Leukocytes, Mononuclear","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007963","descriptor_name":"Leukocytes, Mononuclear","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D007963","descriptor_name":"Leukocytes, Mononuclear","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007963","descriptor_name":"Leukocytes, Mononuclear","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-025-06084-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06084-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06084-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40011801","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40011801","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c117225665804912b8784e8163426b47","is_oa":true,"landing_page_url":"https://doaj.org/article/c117225665804912b8784e8163426b47","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 26, Iss 1, Pp 1-18 (2025)","raw_type":"article"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:1bb1b97e-e9ac-4059-a868-aca57a9fdf8a","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"OpenAlex","raw_type":"http://purl.org/coar/resource_type/c_dcae04bc"},{"id":"pmh:oai:pubmedcentral.nih.gov:11863512","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11863512","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-025-06084-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06084-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06084-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.6600000262260437}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4407964928.pdf"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1602702667","https://openalex.org/W1968931043","https://openalex.org/W2002424170","https://openalex.org/W2046494066","https://openalex.org/W2066013154","https://openalex.org/W2104269895","https://openalex.org/W2111220263","https://openalex.org/W2141361677","https://openalex.org/W2148077170","https://openalex.org/W2624962318","https://openalex.org/W2772063315","https://openalex.org/W2800392236","https://openalex.org/W2808845633","https://openalex.org/W2889326414","https://openalex.org/W2895456557","https://openalex.org/W2897249806","https://openalex.org/W2901677030","https://openalex.org/W2902652978","https://openalex.org/W2949177718","https://openalex.org/W2949237386","https://openalex.org/W2971398276","https://openalex.org/W2971653850","https://openalex.org/W2979911343","https://openalex.org/W2995410603","https://openalex.org/W3039795571","https://openalex.org/W3047725782","https://openalex.org/W3092803354","https://openalex.org/W3102939511","https://openalex.org/W3106188259","https://openalex.org/W3119746298","https://openalex.org/W3127452014","https://openalex.org/W3135168232","https://openalex.org/W3164692211","https://openalex.org/W3198123874","https://openalex.org/W3207419498","https://openalex.org/W4200581587","https://openalex.org/W4205514149","https://openalex.org/W4205921232","https://openalex.org/W4210587306","https://openalex.org/W4210607772","https://openalex.org/W4214611015","https://openalex.org/W4214637479","https://openalex.org/W4221065117","https://openalex.org/W4289835859","https://openalex.org/W4296709841","https://openalex.org/W4321478737","https://openalex.org/W4382632237","https://openalex.org/W4386095572","https://openalex.org/W4399582985","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W2930001795","https://openalex.org/W3013151148","https://openalex.org/W4229068595","https://openalex.org/W4247819660","https://openalex.org/W4231548908","https://openalex.org/W4396903217","https://openalex.org/W2975378934","https://openalex.org/W3104133195","https://openalex.org/W2781745374","https://openalex.org/W3016776056"],"abstract_inverted_index":{"Single-cell":[0],"10x":[1],"genomics":[2],"multiome":[3],"datasets":[4],"containing":[5],"paired":[6],"ATAC":[7],"and":[8,17,30,35,41,53,66],"RNA":[9,64],"from":[10],"human":[11],"peripheral":[12],"blood":[13],"mononuclear":[14],"cells":[15,19,95],"(PBMC)":[16],"neuronal":[18,76],"with":[20],"Alzheimer's":[21],"Disease":[22],"were":[23,81],"used":[24],"for":[25],"supervised":[26,51],"annotation.":[27],"Using":[28],"linear":[29],"nonlinear":[31],"dimensionality":[32],"reduction":[33],"methods":[34],"random":[36],"forest,":[37],"support":[38],"vector":[39],"machine":[40],"logistic":[42],"regression":[43],"classification":[44],"models,":[45],"we":[46],"demonstrate":[47],"the":[48,97],"improvement":[49,71,99],"in":[50,56,100],"annotation":[52],"prediction":[54],"confidence":[55],"PBMC":[57,89],"data":[58],"when":[59,74,83],"using":[60,84],"a":[61],"combination":[62],"of":[63],"seq":[65],"ATAC-seq":[67],"data.":[68],"No":[69],"such":[70],"was":[72],"observed":[73],"annotating":[75],"cells.":[77],"Specifically,":[78],"F1":[79,101],"scores":[80],"improved":[82],"scVI":[85],"embeddings":[86],"to":[87],"annotate":[88],"sub-types.":[90],"CD4":[91],"T":[92],"effector":[93],"memory":[94],"showed":[96],"largest":[98],"score.":[102]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
