{"id":"https://openalex.org/W4407368570","doi":"https://doi.org/10.1186/s12859-025-06068-6","title":"Mammalian piRNA target prediction using a hierarchical attention model","display_name":"Mammalian piRNA target prediction using a hierarchical attention model","publication_year":2025,"publication_date":"2025-02-11","ids":{"openalex":"https://openalex.org/W4407368570","doi":"https://doi.org/10.1186/s12859-025-06068-6","pmid":"https://pubmed.ncbi.nlm.nih.gov/39934678"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-025-06068-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06068-6","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-025-06068-6.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-025-06068-6.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100671125","display_name":"Tianjiao Zhang","orcid":"https://orcid.org/0000-0001-9807-8620"},"institutions":[{"id":"https://openalex.org/I4210151615","display_name":"Wuyi University","ror":"https://ror.org/0488wz367","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210151615"]},{"id":"https://openalex.org/I98834328","display_name":"Wuyi University","ror":"https://ror.org/059djzq42","country_code":"CN","type":"education","lineage":["https://openalex.org/I98834328"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tianjiao Zhang","raw_affiliation_strings":["School of Pharmacy and Food Engineering, Wuyi University, Jiangmen, 529020, China. tjzhang@wyu.edu.cn","School of Pharmacy and Food Engineering, Wuyi University, Jiangmen, 529020, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Pharmacy and Food Engineering, Wuyi University, Jiangmen, 529020, China. tjzhang@wyu.edu.cn","institution_ids":["https://openalex.org/I98834328","https://openalex.org/I4210151615"]},{"raw_affiliation_string":"School of Pharmacy and Food Engineering, Wuyi University, Jiangmen, 529020, China","institution_ids":["https://openalex.org/I98834328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031520395","display_name":"Liang Chen","orcid":"https://orcid.org/0000-0001-6644-477X"},"institutions":[{"id":"https://openalex.org/I32574673","display_name":"Shantou University","ror":"https://ror.org/01a099706","country_code":"CN","type":"education","lineage":["https://openalex.org/I32574673"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liang Chen","raw_affiliation_strings":["Department of Computer Science and Technology, College of Mathematics and Computer, Shantou University, Shantou, 515821, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, College of Mathematics and Computer, Shantou University, Shantou, 515821, China","institution_ids":["https://openalex.org/I32574673"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020477193","display_name":"Haibin Zhu","orcid":"https://orcid.org/0000-0003-1922-1631"},"institutions":[{"id":"https://openalex.org/I159948400","display_name":"Jinan University","ror":"https://ror.org/02xe5ns62","country_code":"CN","type":"education","lineage":["https://openalex.org/I159948400"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haibin Zhu","raw_affiliation_strings":["Department of Statistics and Data Science, School of Economics, Jinan University, Guangzhou, 510632, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics and Data Science, School of Economics, Jinan University, Guangzhou, 510632, China","institution_ids":["https://openalex.org/I159948400"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063000955","display_name":"Garry Wong","orcid":"https://orcid.org/0000-0003-4566-9958"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":true,"raw_author_name":"Garry Wong","raw_affiliation_strings":["Faculty of Health Sciences, University of Macau, Taipa, 999078, Macau SAR, China. GarryGWong@um.edu.mo","Faculty of Health Sciences, University of Macau, Taipa, 999078, Macau SAR, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Health Sciences, University of Macau, Taipa, 999078, Macau SAR, China. GarryGWong@um.edu.mo","institution_ids":["https://openalex.org/I204512498"]},{"raw_affiliation_string":"Faculty of Health Sciences, University of Macau, Taipa, 999078, Macau SAR, China","institution_ids":["https://openalex.org/I204512498"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5063000955","https://openalex.org/A5100671125"],"corresponding_institution_ids":["https://openalex.org/I204512498","https://openalex.org/I4210151615","https://openalex.org/I98834328"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.6316,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.81345279,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":97},"biblio":{"volume":"26","issue":"1","first_page":"50","last_page":"50"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.5752000212669373,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.5752000212669373,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.09870000183582306,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.07500000298023224,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6251704096794128},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5780860185623169},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5604269504547119},{"id":"https://openalex.org/keywords/piwi-interacting-rna","display_name":"Piwi-interacting RNA","score":0.4623526334762573},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36215680837631226},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34358346462249756},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20394447445869446},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.178970605134964},{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.15787920355796814},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10032594203948975},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09188970923423767}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6251704096794128},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5780860185623169},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5604269504547119},{"id":"https://openalex.org/C147724379","wikidata":"https://www.wikidata.org/wiki/Q2367421","display_name":"Piwi-interacting RNA","level":5,"score":0.4623526334762573},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36215680837631226},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34358346462249756},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20394447445869446},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.178970605134964},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.15787920355796814},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10032594203948975},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09188970923423767}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000094322","descriptor_name":"Piwi-Interacting RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000094322","descriptor_name":"Piwi-Interacting RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000094322","descriptor_name":"Piwi-Interacting RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000094322","descriptor_name":"Piwi-Interacting RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000094322","descriptor_name":"Piwi-Interacting RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-025-06068-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06068-6","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-025-06068-6.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39934678","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39934678","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11817350","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11817350","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11817350/pdf/12859_2025_Article_6068.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:b1fc67f3268f44538cde481ceda81bd0","is_oa":true,"landing_page_url":"https://doaj.org/article/b1fc67f3268f44538cde481ceda81bd0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 26, Iss 1, Pp 1-17 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-025-06068-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06068-6","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-025-06068-6.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/13","display_name":"Climate action"}],"awards":[{"id":"https://openalex.org/G2519640354","display_name":null,"funder_award_id":"508170020342","funder_id":"https://openalex.org/F4320324310","funder_display_name":"Wuyi University"}],"funders":[{"id":"https://openalex.org/F4320310972","display_name":"Shantou University","ror":"https://ror.org/01a099706"},{"id":"https://openalex.org/F4320322292","display_name":"Jinan University","ror":"https://ror.org/02xe5ns62"},{"id":"https://openalex.org/F4320322841","display_name":"Universidade de Macau","ror":"https://ror.org/01r4q9n85"},{"id":"https://openalex.org/F4320324310","display_name":"Wuyi University","ror":"https://ror.org/059djzq42"},{"id":"https://openalex.org/F4320337292","display_name":"Faculdade de Ci\u00eancias da Sa\u00fade, Universidade de Macau","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4407368570.pdf","grobid_xml":"https://content.openalex.org/works/W4407368570.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1801597782","https://openalex.org/W1823358129","https://openalex.org/W1973596898","https://openalex.org/W1991435353","https://openalex.org/W1993362950","https://openalex.org/W2011813973","https://openalex.org/W2044545834","https://openalex.org/W2053998703","https://openalex.org/W2085880427","https://openalex.org/W2089971639","https://openalex.org/W2117165052","https://openalex.org/W2118420574","https://openalex.org/W2120081922","https://openalex.org/W2129706781","https://openalex.org/W2157787135","https://openalex.org/W2213580165","https://openalex.org/W2297315363","https://openalex.org/W2536561555","https://openalex.org/W2744417500","https://openalex.org/W2746395485","https://openalex.org/W2752782242","https://openalex.org/W2785454496","https://openalex.org/W2787719063","https://openalex.org/W2788865254","https://openalex.org/W2799603881","https://openalex.org/W2935212090","https://openalex.org/W2964849163","https://openalex.org/W3080321917","https://openalex.org/W3089472685","https://openalex.org/W3100777112","https://openalex.org/W3175752499","https://openalex.org/W3186960843","https://openalex.org/W3197037744","https://openalex.org/W3206978724","https://openalex.org/W4206633437","https://openalex.org/W4211064852","https://openalex.org/W4213431060","https://openalex.org/W4281672268","https://openalex.org/W4295763117","https://openalex.org/W4307843054","https://openalex.org/W4309212011","https://openalex.org/W4381546214","https://openalex.org/W4381891434","https://openalex.org/W4395074739"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2158912913","https://openalex.org/W4221011377","https://openalex.org/W2027956742","https://openalex.org/W2924035798","https://openalex.org/W3192072282","https://openalex.org/W2965423738","https://openalex.org/W2796472296","https://openalex.org/W4366421230","https://openalex.org/W2013814485"],"abstract_inverted_index":{"BACKGROUND:":[0],"Piwi-interacting":[1],"RNAs":[2],"(piRNAs)":[3],"are":[4,47],"well":[5,49],"established":[6],"for":[7],"monitoring":[8],"and":[9,67,141,174,184],"protecting":[10],"the":[11,43,58,65,72,91,103,136,146,162,168],"genome":[12],"from":[13,97,189],"transposons":[14],"in":[15,29,38,52,70,123,145],"germline":[16],"cells.":[17],"Recently,":[18],"numerous":[19],"studies":[20],"provided":[21],"evidence":[22],"that":[23,159],"piRNAs":[24,143],"also":[25],"play":[26],"important":[27],"roles":[28],"regulating":[30,39],"mRNA":[31],"transcript":[32],"levels.":[33],"Despite":[34],"their":[35],"significant":[36],"role":[37],"cellular":[40],"RNA":[41],"levels,":[42],"piRNA":[44,61,74,95,147,165,180],"targeting":[45,75,92,177],"rules":[46],"not":[48],"defined,":[50],"especially":[51],"mammals,":[53],"which":[54],"poses":[55],"obstacles":[56],"to":[57,101,134],"elucidation":[59],"of":[60,94,105,138,164],"function.":[62],"RESULTS:":[63],"Given":[64],"complexity":[66],"current":[68,175],"limitation":[69],"understanding":[71],"mammalian":[73],"rules,":[76],"we":[77,153],"designed":[78],"a":[79,108,117,155],"deep":[80,86,156],"learning":[81,87,110,157],"model":[82,115,131],"by":[83,171],"selecting":[84],"appropriate":[85],"sub-networks":[88],"based":[89],"on":[90],"patterns":[93],"inferred":[96],"previous":[98],"experiments.":[99],"Additionally,":[100],"alleviate":[102],"problem":[104],"insufficient":[106,172],"data,":[107],"transfer":[109],"approach":[111],"was":[112,132],"employed.":[113],"Our":[114],"achieves":[116],"good":[118],"discriminatory":[119],"power":[120],"(Accuracy:":[121],"98.5%)":[122],"predicting":[124],"an":[125],"independent":[126],"test":[127],"dataset.":[128],"Finally,":[129],"this":[130,151],"utilized":[133],"predict":[135],"targets":[137],"all":[139],"mouse":[140],"human":[142],"available":[144],"database.":[148],"CONCLUSIONS:":[149],"In":[150],"research,":[152],"developed":[154],"framework":[158],"significantly":[160],"advances":[161],"prediction":[163,182],"targets,":[166],"overcoming":[167],"limitations":[169],"posed":[170],"data":[173],"incomplete":[176],"rules.":[178],"The":[179],"target":[181],"network":[183],"results":[185],"can":[186],"be":[187],"downloaded":[188],"https://github.com/SofiaTianjiaoZhang/piRNATarget":[190],".":[191]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-25T08:15:23.626066","created_date":"2025-10-10T00:00:00"}
