{"id":"https://openalex.org/W4407136152","doi":"https://doi.org/10.1186/s12859-025-06060-0","title":"CellMAP: an open-source software tool to batch-process cell topography and stiffness maps collected with an atomic force microscope","display_name":"CellMAP: an open-source software tool to batch-process cell topography and stiffness maps collected with an atomic force microscope","publication_year":2025,"publication_date":"2025-02-04","ids":{"openalex":"https://openalex.org/W4407136152","doi":"https://doi.org/10.1186/s12859-025-06060-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/39905362"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-025-06060-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06060-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-025-06060-0.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-025-06060-0.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077998264","display_name":"Antoine Allard","orcid":"https://orcid.org/0000-0003-2200-913X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210095810","display_name":"Laboratoire Analyse et Mod\u00e9lisation pour la Biologie et l'Environnement","ror":"https://ror.org/00wwxk695","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210095810","https://openalex.org/I4210128300","https://openalex.org/I4210142324","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210154987","display_name":"Laboratoire Ondes et Mati\u00e8re d'Aquitaine","ror":"https://ror.org/05qsp5m64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210098836","https://openalex.org/I4210154987"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Antoine Allard","raw_affiliation_strings":["LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France. antoine.allard@u-bordeaux.fr","LOMA, UMR 5798, CNRS, Universite de Bordeaux, Talence, France. antoine.allard@u-bordeaux.fr","LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)","LOMA - Laboratoire Ondes et Mati\u00e8re d'Aquitaine (Universit\u00e9 de Bordeaux, PAC Talence, b\u00e2t. A4N, 351 Cours de la Lib\u00e9ration, 33405 TALENCE CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France. antoine.allard@u-bordeaux.fr","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954"]},{"raw_affiliation_string":"LOMA, UMR 5798, CNRS, Universite de Bordeaux, Talence, France. antoine.allard@u-bordeaux.fr","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530"]},{"raw_affiliation_string":"LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)","institution_ids":["https://openalex.org/I4210095810"]},{"raw_affiliation_string":"LOMA - Laboratoire Ondes et Mati\u00e8re d'Aquitaine (Universit\u00e9 de Bordeaux, PAC Talence, b\u00e2t. A4N, 351 Cours de la Lib\u00e9ration, 33405 TALENCE CEDEX - France)","institution_ids":["https://openalex.org/I15057530","https://openalex.org/I4210154987"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092829931","display_name":"Maxime Liboz","orcid":"https://orcid.org/0000-0001-7091-6426"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210095810","display_name":"Laboratoire Analyse et Mod\u00e9lisation pour la Biologie et l'Environnement","ror":"https://ror.org/00wwxk695","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210095810","https://openalex.org/I4210128300","https://openalex.org/I4210142324","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210142324","display_name":"CY Cergy Paris Universit\u00e9","ror":"https://ror.org/043htjv09","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210142324"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Maxime Liboz","raw_affiliation_strings":["LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France","LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210095810","https://openalex.org/I4210142324"]},{"raw_affiliation_string":"LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)","institution_ids":["https://openalex.org/I4210095810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056388339","display_name":"Rapha\u00ebl Cr\u00e9pin","orcid":"https://orcid.org/0009-0001-4973-4246"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210095810","display_name":"Laboratoire Analyse et Mod\u00e9lisation pour la Biologie et l'Environnement","ror":"https://ror.org/00wwxk695","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210095810","https://openalex.org/I4210128300","https://openalex.org/I4210142324","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210142324","display_name":"CY Cergy Paris Universit\u00e9","ror":"https://ror.org/043htjv09","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210142324"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Rapha\u00ebl Cr\u00e9pin","raw_affiliation_strings":["LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France","LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210095810","https://openalex.org/I4210142324"]},{"raw_affiliation_string":"LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)","institution_ids":["https://openalex.org/I4210095810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080901923","display_name":"S. Labdi","orcid":"https://orcid.org/0000-0003-4247-0206"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210095810","display_name":"Laboratoire Analyse et Mod\u00e9lisation pour la Biologie et l'Environnement","ror":"https://ror.org/00wwxk695","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210095810","https://openalex.org/I4210128300","https://openalex.org/I4210142324","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210142324","display_name":"CY Cergy Paris Universit\u00e9","ror":"https://ror.org/043htjv09","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210142324"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sid Labdi","raw_affiliation_strings":["LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France","LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210095810","https://openalex.org/I4210142324"]},{"raw_affiliation_string":"LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)","institution_ids":["https://openalex.org/I4210095810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067498771","display_name":"Olek Maciejak","orcid":"https://orcid.org/0000-0001-9594-9435"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210095810","display_name":"Laboratoire Analyse et Mod\u00e9lisation pour la Biologie et l'Environnement","ror":"https://ror.org/00wwxk695","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210095810","https://openalex.org/I4210128300","https://openalex.org/I4210142324","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210142324","display_name":"CY Cergy Paris Universit\u00e9","ror":"https://ror.org/043htjv09","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210142324"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olek Maciejak","raw_affiliation_strings":["LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France","LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210095810","https://openalex.org/I4210142324"]},{"raw_affiliation_string":"LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)","institution_ids":["https://openalex.org/I4210095810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068992901","display_name":"Michel Malo","orcid":"https://orcid.org/0009-0000-8339-513X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210095810","display_name":"Laboratoire Analyse et Mod\u00e9lisation pour la Biologie et l'Environnement","ror":"https://ror.org/00wwxk695","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210095810","https://openalex.org/I4210128300","https://openalex.org/I4210142324","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210142324","display_name":"CY Cergy Paris Universit\u00e9","ror":"https://ror.org/043htjv09","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210142324"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Michel Malo","raw_affiliation_strings":["LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France","LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210095810","https://openalex.org/I4210142324"]},{"raw_affiliation_string":"LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)","institution_ids":["https://openalex.org/I4210095810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027577560","display_name":"Cl\u00e9ment Campillo","orcid":"https://orcid.org/0000-0003-4698-8643"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I185839726","display_name":"Institut Universitaire de France","ror":"https://ror.org/055khg266","country_code":"FR","type":"education","lineage":["https://openalex.org/I185839726"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210095810","display_name":"Laboratoire Analyse et Mod\u00e9lisation pour la Biologie et l'Environnement","ror":"https://ror.org/00wwxk695","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210095810","https://openalex.org/I4210128300","https://openalex.org/I4210142324","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210142324","display_name":"CY Cergy Paris Universit\u00e9","ror":"https://ror.org/043htjv09","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210142324"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Cl\u00e9ment Campillo","raw_affiliation_strings":["Institut Universitaire de France (IUF), 75231, Paris, France","LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France","IUF - Institut universitaire de France (Maison des Universit\u00e9s 103 Boulevard Saint-Michel 75005 Paris - France)","LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut Universitaire de France (IUF), 75231, Paris, France","institution_ids":["https://openalex.org/I185839726"]},{"raw_affiliation_string":"LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210095810","https://openalex.org/I4210142324"]},{"raw_affiliation_string":"IUF - Institut universitaire de France (Maison des Universit\u00e9s 103 Boulevard Saint-Michel 75005 Paris - France)","institution_ids":["https://openalex.org/I185839726"]},{"raw_affiliation_string":"LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)","institution_ids":["https://openalex.org/I4210095810"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002173231","display_name":"Guillaume Lamour","orcid":"https://orcid.org/0000-0002-9331-5532"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210095810","display_name":"Laboratoire Analyse et Mod\u00e9lisation pour la Biologie et l'Environnement","ror":"https://ror.org/00wwxk695","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210095810","https://openalex.org/I4210128300","https://openalex.org/I4210142324","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Guillaume Lamour","raw_affiliation_strings":["LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France. guillaume.lamour@univ-evry.fr","LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LAMBE, CNRS, Universit\u00e9 Paris-Saclay, Univ Evry, CY Cergy Paris Universit\u00e9, 91025, Evry-Courcouronnes, France. guillaume.lamour@univ-evry.fr","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I88467170"]},{"raw_affiliation_string":"LAMBE - UMR 8587 - Laboratoire Analyse, Mod\u00e9lisation et Mat\u00e9riaux pour la Biologie et l'Environnement (B\u00e2t. Maupertuis 1\u00b0 \u00e9tage bd Fran\u00e7ois Mitterrand 91025 EVRY CEDEX - France)","institution_ids":["https://openalex.org/I4210095810"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5002173231","https://openalex.org/A5077998264"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I277688954","https://openalex.org/I4210095810","https://openalex.org/I4210154987","https://openalex.org/I88467170"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.6004,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.59378562,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"26","issue":"1","first_page":"38","last_page":"38"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10923","display_name":"Force Microscopy Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10859","display_name":"Polymer Surface Interaction Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2508","display_name":"Surfaces, Coatings and Films"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/stiffness","display_name":"Stiffness","score":0.6725001335144043},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5655304789543152},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49825096130371094},{"id":"https://openalex.org/keywords/atomic-force-microscopy","display_name":"Atomic force microscopy","score":0.4906829595565796},{"id":"https://openalex.org/keywords/flattening","display_name":"Flattening","score":0.4740074574947357},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.45766857266426086},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4172897934913635},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.3990429639816284},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.37116023898124695},{"id":"https://openalex.org/keywords/composite-material","display_name":"Composite material","score":0.17939770221710205}],"concepts":[{"id":"https://openalex.org/C2779372316","wikidata":"https://www.wikidata.org/wiki/Q569057","display_name":"Stiffness","level":2,"score":0.6725001335144043},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5655304789543152},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49825096130371094},{"id":"https://openalex.org/C102951782","wikidata":"https://www.wikidata.org/wiki/Q49295","display_name":"Atomic force microscopy","level":2,"score":0.4906829595565796},{"id":"https://openalex.org/C19444555","wikidata":"https://www.wikidata.org/wiki/Q212750","display_name":"Flattening","level":2,"score":0.4740074574947357},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.45766857266426086},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4172897934913635},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.3990429639816284},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.37116023898124695},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.17939770221710205},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004548","descriptor_name":"Elasticity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004548","descriptor_name":"Elasticity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018625","descriptor_name":"Microscopy, Atomic Force","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D018625","descriptor_name":"Microscopy, Atomic Force","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D018625","descriptor_name":"Microscopy, Atomic Force","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D018625","descriptor_name":"Microscopy, Atomic Force","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D018625","descriptor_name":"Microscopy, Atomic Force","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-025-06060-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06060-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-025-06060-0.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39905362","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39905362","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-04939057v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04939057","pdf_url":"https://hal.science/hal-04939057v1/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2025, 26 (1), pp.38. &#x27E8;10.1186/s12859-025-06060-0&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11796028","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11796028","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11796028/pdf/12859_2025_Article_6060.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:0a7f1c07cd5247669926157189de170f","is_oa":true,"landing_page_url":"https://doaj.org/article/0a7f1c07cd5247669926157189de170f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 26, Iss 1, Pp 1-16 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-025-06060-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06060-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-025-06060-0.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5541312514","display_name":"Modeling Heart Disease on Chip by Deep Learning-Based Image Analysis","funder_award_id":"ANR-21-CE19-0027","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6402100946","display_name":null,"funder_award_id":"ANR-21-CE19-0027-04","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"},{"id":"https://openalex.org/F4320323712","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032"},{"id":"https://openalex.org/F4879423413","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4407136152.pdf","grobid_xml":"https://content.openalex.org/works/W4407136152.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W633528133","https://openalex.org/W1980398423","https://openalex.org/W2022315563","https://openalex.org/W2038007769","https://openalex.org/W2047205370","https://openalex.org/W2067477957","https://openalex.org/W2092412094","https://openalex.org/W2735069686","https://openalex.org/W2809461446","https://openalex.org/W2833056124","https://openalex.org/W2885096915","https://openalex.org/W2930640644","https://openalex.org/W2944037923","https://openalex.org/W2974019153","https://openalex.org/W3042439904","https://openalex.org/W3093943138","https://openalex.org/W3204647523","https://openalex.org/W4386560016","https://openalex.org/W4391636444","https://openalex.org/W4394840486"],"related_works":["https://openalex.org/W2049450268","https://openalex.org/W3163663844","https://openalex.org/W2076772710","https://openalex.org/W2046237991","https://openalex.org/W2627522194","https://openalex.org/W2504233681","https://openalex.org/W2946123365","https://openalex.org/W2015179278","https://openalex.org/W2390326991","https://openalex.org/W4390726246"],"abstract_inverted_index":{"Atomic":[0],"force":[1],"microscopy":[2],"(AFM)":[3],"is":[4,34,81],"the":[5,11,65,87,97,118],"gold-standard":[6],"technique":[7],"to":[8,43],"simultaneously":[9],"map":[10],"morphology":[12],"and":[13,25,40,70,100,102,106,120],"viscoelastic":[14],"properties":[15,122],"of":[16,67,73,86,92,96,104,123],"living":[17,74],"cells.":[18,75],"Although":[19],"existing":[20],"software":[21,61],"tools,":[22],"both":[23],"open-source":[24],"from":[26,46],"AFM":[27],"manufacturers,":[28],"can":[29,110],"analyze":[30],"cells":[31,48],"individually,":[32],"there":[33],"a":[35,50,59,113],"growing":[36],"need":[37],"for":[38],"fast":[39],"accessible":[41],"codes":[42],"compile":[44],"data":[45],"multiple":[47],"into":[49],"single":[51],"dataset.":[52],"To":[53],"address":[54],"this,":[55],"we":[56],"present":[57],"CellMAP,":[58],"user-friendly":[60],"tool":[62],"that":[63,116],"streamlines":[64],"batch-processing":[66],"AFM-derived":[68],"topography":[69],"stiffness":[71,107,121],"maps":[72],"Our":[76],"analysis":[77],"pipeline":[78],"includes":[79],"but":[80],"not":[82],"limited":[83],"to:":[84],"flattening":[85],"underlying":[88],"substrate":[89],"surface,":[90],"filtering":[91],"outlier":[93],"values,":[94],"measurement":[95,103],"cell":[98,115,126],"surface":[99],"volume,":[101],"height":[105,119],"distributions.":[108],"CellMAP":[109],"also":[111],"generate":[112],"composite":[114],"reflects":[117],"an":[124],"entire":[125],"population.":[127]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
