{"id":"https://openalex.org/W4407114045","doi":"https://doi.org/10.1186/s12859-025-06050-2","title":"BioLake: an RNA expression analysis framework for prostate cancer biomarker powered by data lakehouse","display_name":"BioLake: an RNA expression analysis framework for prostate cancer biomarker powered by data lakehouse","publication_year":2025,"publication_date":"2025-02-04","ids":{"openalex":"https://openalex.org/W4407114045","doi":"https://doi.org/10.1186/s12859-025-06050-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/39905288"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-025-06050-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06050-2","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s12859-025-06050-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109608582","display_name":"Qiaowang Li","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Qiaowang Li","raw_affiliation_strings":["Department of Computer Science, University of Calgary, Calgary, AB, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072626559","display_name":"Yaser Gamallat","orcid":"https://orcid.org/0000-0001-9980-2107"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yaser Gamallat","raw_affiliation_strings":["Arnie Charbonneau Cancer Institute and Tom Baker Cancer Center, Calgary, AB, Canada","Department of Pathology and Laboratory Medicine, University of Calgary, Calgary, AB, Canada","Departments of Oncology, Biochemistry and Molecular Biology, University of Calgary, Calgary, AB, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Arnie Charbonneau Cancer Institute and Tom Baker Cancer Center, Calgary, AB, Canada","institution_ids":[]},{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Departments of Oncology, Biochemistry and Molecular Biology, University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020310155","display_name":"Jon Rokne","orcid":"https://orcid.org/0000-0002-3439-2917"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jon George Rokne","raw_affiliation_strings":["Department of Computer Science, University of Calgary, Calgary, AB, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012063931","display_name":"Tarek A. Bismar","orcid":"https://orcid.org/0000-0002-9190-5088"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]},{"id":"https://openalex.org/I4210134748","display_name":"Prostate Cancer Canada","ror":"https://ror.org/03p641z80","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210134748"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Tarek A. Bismar","raw_affiliation_strings":["Arnie Charbonneau Cancer Institute and Tom Baker Cancer Center, Calgary, AB, Canada","Department of Pathology and Laboratory Medicine, University of Calgary, Calgary, AB, Canada","Departments of Oncology, Biochemistry and Molecular Biology, University of Calgary, Calgary, AB, Canada","Prostate Cancer Centre, Calgary, AB, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Arnie Charbonneau Cancer Institute and Tom Baker Cancer Center, Calgary, AB, Canada","institution_ids":[]},{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Departments of Oncology, Biochemistry and Molecular Biology, University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Prostate Cancer Centre, Calgary, AB, Canada","institution_ids":["https://openalex.org/I4210134748"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066265052","display_name":"Reda Alhajj","orcid":"https://orcid.org/0000-0001-6657-9738"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]},{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]},{"id":"https://openalex.org/I3125470973","display_name":"Istanbul Medipol University","ror":"https://ror.org/037jwzz50","country_code":"TR","type":"education","lineage":["https://openalex.org/I3125470973"]}],"countries":["CA","DK","TR"],"is_corresponding":true,"raw_author_name":"Reda Alhajj","raw_affiliation_strings":["Department of Computer Engineering, Istanbul Medipol University, Istanbul, Turkey. alhajj@ucalgary.ca","Department of Computer Science, University of Calgary, Calgary, AB, Canada. alhajj@ucalgary.ca","Department of Health Informatics, University of Southern Denmark, Odense, Denmark. alhajj@ucalgary.ca","Department of Computer Engineering, Istanbul Medipol University, Istanbul, Turkey","Department of Health Informatics, University of Southern Denmark, Odense, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Istanbul Medipol University, Istanbul, Turkey. alhajj@ucalgary.ca","institution_ids":["https://openalex.org/I3125470973"]},{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Calgary, AB, Canada. alhajj@ucalgary.ca","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Health Informatics, University of Southern Denmark, Odense, Denmark. alhajj@ucalgary.ca","institution_ids":["https://openalex.org/I177969490"]},{"raw_affiliation_string":"Department of Computer Engineering, Istanbul Medipol University, Istanbul, Turkey","institution_ids":["https://openalex.org/I3125470973"]},{"raw_affiliation_string":"Department of Health Informatics, University of Southern Denmark, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5066265052"],"corresponding_institution_ids":["https://openalex.org/I168635309","https://openalex.org/I177969490","https://openalex.org/I3125470973"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.8557,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.68412966,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"26","issue":"1","first_page":"37","last_page":"37"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9854999780654907,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.8334166407585144},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7909319400787354},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.6130603551864624},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5641162991523743},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.540080189704895},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5230327844619751},{"id":"https://openalex.org/keywords/data-pre-processing","display_name":"Data pre-processing","score":0.4973964989185333},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.49384361505508423},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4744371473789215},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.4376378357410431},{"id":"https://openalex.org/keywords/data-warehouse","display_name":"Data warehouse","score":0.42331811785697937},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3797813057899475},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.22698789834976196}],"concepts":[{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.8334166407585144},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7909319400787354},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.6130603551864624},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5641162991523743},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.540080189704895},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5230327844619751},{"id":"https://openalex.org/C10551718","wikidata":"https://www.wikidata.org/wiki/Q5227332","display_name":"Data pre-processing","level":2,"score":0.4973964989185333},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.49384361505508423},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4744371473789215},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.4376378357410431},{"id":"https://openalex.org/C135572916","wikidata":"https://www.wikidata.org/wiki/Q193351","display_name":"Data warehouse","level":2,"score":0.42331811785697937},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3797813057899475},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.22698789834976196},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-025-06050-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06050-2","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39905288","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39905288","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11792420","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11792420","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11792420/pdf/12859_2025_Article_6050.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:sdu.dk:openaire/08e66ed8-86ee-47c5-81ab-268c86c2441c","is_oa":true,"landing_page_url":"https://portal.findresearcher.sdu.dk/da/publications/08e66ed8-86ee-47c5-81ab-268c86c2441c","pdf_url":"https://findresearcher.sdu.dk/ws/files/284790127/BioLake_an_RNA_expression_analysis_framework_for_prostate_cancer_biomarker_powered_by_data_lakehouse.pdf","source":{"id":"https://openalex.org/S4306400423","display_name":"University of Southern Denmark Research Portal (University of Southern Denmark)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177969490","host_organization_name":"University of Southern Denmark","host_organization_lineage":["https://openalex.org/I177969490"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Li, Q, Gamallat, Y, Rokne, J G, Bismar, T A & Alhajj, R 2025, 'BioLake : an RNA expression analysis framework for prostate cancer biomarker powered by data lakehouse', BMC Bioinformatics, vol. 26, no. 1, 37. https://doi.org/10.1186/s12859-025-06050-2","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:09a6eccb4b4f4757a32dbafa8536d8a9","is_oa":true,"landing_page_url":"https://doaj.org/article/09a6eccb4b4f4757a32dbafa8536d8a9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 26, Iss 1, Pp 1-17 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-025-06050-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06050-2","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.5799999833106995}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1527927437","https://openalex.org/W1578104218","https://openalex.org/W1989017925","https://openalex.org/W2003549201","https://openalex.org/W2005112390","https://openalex.org/W2006761638","https://openalex.org/W2009274826","https://openalex.org/W2035618305","https://openalex.org/W2070050178","https://openalex.org/W2079618625","https://openalex.org/W2082704080","https://openalex.org/W2108234281","https://openalex.org/W2130410032","https://openalex.org/W2149992227","https://openalex.org/W2230320310","https://openalex.org/W2294735072","https://openalex.org/W2607129810","https://openalex.org/W2767377392","https://openalex.org/W2804291108","https://openalex.org/W2887015436","https://openalex.org/W2933816289","https://openalex.org/W2949216109","https://openalex.org/W3085477028","https://openalex.org/W3109082402","https://openalex.org/W3177209274","https://openalex.org/W4237212714","https://openalex.org/W4299959846","https://openalex.org/W4402772708","https://openalex.org/W4403680775","https://openalex.org/W4403925524"],"related_works":["https://openalex.org/W2944823289","https://openalex.org/W2972511296","https://openalex.org/W3086422166","https://openalex.org/W2053247611","https://openalex.org/W3010890513","https://openalex.org/W3165117444","https://openalex.org/W3016972457","https://openalex.org/W2605106030","https://openalex.org/W3117229956","https://openalex.org/W4220726286"],"abstract_inverted_index":{"Biomedical":[0],"researchers":[1,53,81,136,167],"must":[2],"often":[3],"deal":[4],"with":[5,170,245],"large":[6,174],"amounts":[7],"of":[8,13,71,105,156,159,179,196,204,225,229,248],"raw":[9,23],"data,":[10,134],"and":[11,100,119],"analysis":[12,75,120,126,131,191,244],"this":[14,37],"data":[15,24,40,56,74,106,112,141,158,171,187,215,243,251],"might":[16,29],"provide":[17,116],"significant":[18],"insights.":[19,35],"However,":[20],"if":[21],"the":[22,64,97,111,125,180,190,207,222,226,246],"size":[25],"is":[26,44,211,221],"large,":[27],"it":[28],"be":[30],"difficult":[31],"to":[32,51,82,115,137,161,164,193,239],"uncover":[33],"these":[34],"In":[36,103,177,231],"paper,":[38],"a":[39,68,143,153,235],"framework":[41],"named":[42],"BioLake":[43,66,109,128,151,183,205,233],"presented":[45],"that":[46,166],"provides":[47],"minimalist":[48],"interactive":[49],"methods":[50],"help":[52],"conduct":[54],"bioinformatics":[55,73],"analysis.":[57],"Unlike":[58],"some":[59],"existing":[60],"analytical":[61],"tools":[62],"on":[63],"market,":[65],"supports":[67,129],"wide":[69],"range":[70],"web-based":[72],"for":[76,132,148,175,216],"public":[77,209],"datasets,":[78],"while":[79],"allowing":[80,135],"analyze":[83],"their":[84,139],"private":[85],"datasets":[86],"instantly.":[87],"The":[88,200],"tool":[89,238],"also":[90],"significantly":[91],"enhances":[92],"result":[93],"interpretability":[94],"by":[95],"providing":[96],"source":[98],"code":[99],"detailed":[101],"instructions.":[102],"terms":[104,178],"storage":[107,117],"design,":[108],"adopts":[110],"lakehouse":[113],"architecture":[114],"scalability":[118],"flexibility.":[121],"To":[122],"further":[123],"enhance":[124],"efficiency,":[127],"online":[130,237,250],"custom":[133,157,249],"upload":[138,155],"own":[140],"via":[142],"designed":[144],"procedure":[145],"without":[146],"waiting":[147],"server-side":[149],"approval.":[150],"allows":[152],"one-time":[154],"up":[160],"500":[162],"MB":[163],"ensure":[165],"avoid":[168],"issues":[169],"being":[172],"too":[173],"upload.":[176],"built-in":[181],"dataset,":[182],"applies":[184],"reactive":[185],"continuous":[186],"integration,":[188],"helping":[189],"pipeline":[192],"get":[194],"rid":[195],"most":[197],"preprocessing":[198],"steps.":[199],"only":[201],"pre-built-in":[202],"dataset":[203],"in":[206],"first":[208],"version":[210],"TCGA-PRAD":[212],"mRNA":[213,242],"expression":[214],"prostate":[217],"cancer":[218],"research,":[219],"which":[220],"primary":[223],"focus":[224],"development":[227],"team":[228],"BioLake.":[230],"summary,":[232],"offers":[234],"lightweight":[236],"facilitate":[240],"bioinformatic":[241],"support":[247],"processing.":[252]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-20T07:56:41.581041","created_date":"2025-10-10T00:00:00"}
