{"id":"https://openalex.org/W4406891383","doi":"https://doi.org/10.1186/s12859-025-06048-w","title":"Metadag: a web tool to generate and analyse metabolic networks","display_name":"Metadag: a web tool to generate and analyse metabolic networks","publication_year":2025,"publication_date":"2025-01-28","ids":{"openalex":"https://openalex.org/W4406891383","doi":"https://doi.org/10.1186/s12859-025-06048-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/39875845"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-025-06048-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06048-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06048-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06048-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006534449","display_name":"Pere Palmer-Rodr\u00edguez","orcid":"https://orcid.org/0000-0001-5794-6858"},"institutions":[{"id":"https://openalex.org/I50441567","display_name":"Universitat de les Illes Balears","ror":"https://ror.org/03e10x626","country_code":"ES","type":"education","lineage":["https://openalex.org/I50441567"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Pere Palmer-Rodr\u00edguez","raw_affiliation_strings":["Mathematics and Computer Science Department, University of the Balearic Islands, Ctra Valldemossa, Km 7.5, Palma, 07122, Balearic Islands, Spain. pere.palmer@uib.es","Mathematics and Computer Science Department, University of the Balearic Islands, Ctra Valldemossa, Km 7.5, Palma, 07122, Balearic Islands, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Department, University of the Balearic Islands, Ctra Valldemossa, Km 7.5, Palma, 07122, Balearic Islands, Spain. pere.palmer@uib.es","institution_ids":["https://openalex.org/I50441567"]},{"raw_affiliation_string":"Mathematics and Computer Science Department, University of the Balearic Islands, Ctra Valldemossa, Km 7.5, Palma, 07122, Balearic Islands, Spain","institution_ids":["https://openalex.org/I50441567"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058061692","display_name":"Ricardo Alberich","orcid":"https://orcid.org/0000-0002-0707-8607"},"institutions":[{"id":"https://openalex.org/I50441567","display_name":"Universitat de les Illes Balears","ror":"https://ror.org/03e10x626","country_code":"ES","type":"education","lineage":["https://openalex.org/I50441567"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ricardo Alberich","raw_affiliation_strings":["Mathematics and Computer Science Department, University of the Balearic Islands, Ctra Valldemossa, Km 7.5, Palma, 07122, Balearic Islands, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Department, University of the Balearic Islands, Ctra Valldemossa, Km 7.5, Palma, 07122, Balearic Islands, Spain","institution_ids":["https://openalex.org/I50441567"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083328422","display_name":"Mariana Reyes\u2010Prieto","orcid":"https://orcid.org/0000-0001-6292-2420"},"institutions":[{"id":"https://openalex.org/I4210097149","display_name":"Fundaci\u00f3n para el Fomento de la Investigaci\u00f3n Sanitaria y Biom\u00e9dica de la Comunitat Valenciana","ror":"https://ror.org/0116vew40","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210097149"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mariana Reyes-Prieto","raw_affiliation_strings":["Sequencing and Bioinformatics Service, Foundation for the Promotion of Health and Biomedical Research of the Valencian Community (FISABIO), Avda. de Catalunya, 21, 46020, Valencia, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sequencing and Bioinformatics Service, Foundation for the Promotion of Health and Biomedical Research of the Valencian Community (FISABIO), Avda. de Catalunya, 21, 46020, Valencia, Valencia, Spain","institution_ids":["https://openalex.org/I4210097149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062097488","display_name":"Castro Ja","orcid":"https://orcid.org/0000-0001-8262-560X"},"institutions":[{"id":"https://openalex.org/I50441567","display_name":"Universitat de les Illes Balears","ror":"https://ror.org/03e10x626","country_code":"ES","type":"education","lineage":["https://openalex.org/I50441567"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 A. Castro","raw_affiliation_strings":["Biology Department, University of the Balearic Islands, Ctra Valldemossa, Km 7.5, 07122, Palma, Balearic Islands, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biology Department, University of the Balearic Islands, Ctra Valldemossa, Km 7.5, 07122, Palma, Balearic Islands, Spain","institution_ids":["https://openalex.org/I50441567"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086194329","display_name":"Merc\u00e8 Llabr\u00e9s","orcid":"https://orcid.org/0000-0002-5358-6768"},"institutions":[{"id":"https://openalex.org/I50441567","display_name":"Universitat de les Illes Balears","ror":"https://ror.org/03e10x626","country_code":"ES","type":"education","lineage":["https://openalex.org/I50441567"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Merc\u00e8 Llabr\u00e9s","raw_affiliation_strings":["Mathematics and Computer Science Department, University of the Balearic Islands, Ctra Valldemossa, Km 7.5, Palma, 07122, Balearic Islands, Spain. merce.llabres@uib.es","Mathematics and Computer Science Department, University of the Balearic Islands, Ctra Valldemossa, Km 7.5, Palma, 07122, Balearic Islands, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Department, University of the Balearic Islands, Ctra Valldemossa, Km 7.5, Palma, 07122, Balearic Islands, Spain. merce.llabres@uib.es","institution_ids":["https://openalex.org/I50441567"]},{"raw_affiliation_string":"Mathematics and Computer Science Department, University of the Balearic Islands, Ctra Valldemossa, Km 7.5, Palma, 07122, Balearic Islands, Spain","institution_ids":["https://openalex.org/I50441567"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5006534449","https://openalex.org/A5086194329"],"corresponding_institution_ids":["https://openalex.org/I50441567"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":2.0315,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.85064553,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"26","issue":"1","first_page":"31","last_page":"31"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9477999806404114,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9477999806404114,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.00839999970048666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12643","display_name":"Sustainability and Ecological Systems Analysis","score":0.007499999832361937,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.526605486869812},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5069637298583984},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4760475158691406},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3955322206020355},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3820876479148865},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35194137692451477},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3465307354927063},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19179853796958923},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08020943403244019},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.06525963544845581}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.526605486869812},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5069637298583984},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4760475158691406},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3955322206020355},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3820876479148865},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35194137692451477},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3465307354927063},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19179853796958923},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08020943403244019},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.06525963544845581}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-025-06048-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06048-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06048-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39875845","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39875845","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11776228","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11776228","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11776228/pdf/12859_2025_Article_6048.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:1886f9996f41484aaf4cef1059f9607c","is_oa":true,"landing_page_url":"https://doaj.org/article/1886f9996f41484aaf4cef1059f9607c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 26, Iss 1, Pp 1-21 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-025-06048-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06048-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06048-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1855990336","display_name":null,"funder_award_id":".13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G2262748287","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3062142014","display_name":null,"funder_award_id":"PGC2018-096956-B-C43","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G3160678717","display_name":null,"funder_award_id":"PID2021-126114NB-C44","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3636476588","display_name":null,"funder_award_id":"PGC2018-096956-B-C43","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G425668148","display_name":null,"funder_award_id":".13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G451917667","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G4574528651","display_name":null,"funder_award_id":"PGC2018-096956-B-C43","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G490073602","display_name":null,"funder_award_id":"PGC2018","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G5421974903","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G5967599077","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G6731467812","display_name":null,"funder_award_id":"PGC2018","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4406891383.pdf","grobid_xml":"https://content.openalex.org/works/W4406891383.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1974232498","https://openalex.org/W1992549770","https://openalex.org/W2020645572","https://openalex.org/W2079733234","https://openalex.org/W2098824895","https://openalex.org/W2115674434","https://openalex.org/W2119497586","https://openalex.org/W2150550043","https://openalex.org/W2159482845","https://openalex.org/W2304674135","https://openalex.org/W2612031720","https://openalex.org/W2749464300","https://openalex.org/W2801218382","https://openalex.org/W2966440819","https://openalex.org/W2969718750","https://openalex.org/W2977870980","https://openalex.org/W3005995237","https://openalex.org/W3176437359","https://openalex.org/W4294216483","https://openalex.org/W4307425304","https://openalex.org/W4310957810","https://openalex.org/W4360992607"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2415545834","https://openalex.org/W2069695727","https://openalex.org/W2150084125","https://openalex.org/W2118505788","https://openalex.org/W1802639773","https://openalex.org/W1972196578","https://openalex.org/W1490878237","https://openalex.org/W1542823905","https://openalex.org/W2990314835"],"abstract_inverted_index":{"BACKGROUND:":[0],"MetaDAG":[1,52,63,111,146,174,194,237],"is":[2,26,238],"a":[3,67,71,171,231,246],"web-based":[4],"tool":[5,25,130,233],"developed":[6],"to":[7,215,226],"address":[8],"challenges":[9],"posed":[10],"by":[11,97,185],"big":[12],"data":[13,47,124,207],"from":[14,48,116,160,205,223],"omics":[15],"technologies,":[16],"particularly":[17],"in":[18],"metabolic":[19,30,59,72,114,202],"network":[20,144,203],"reconstruction":[21,204],"and":[22,56,70,84,139,167,179,182,198,219],"analysis.":[23],"The":[24,77,91,129],"capable":[27],"of":[28,36,106],"constructing":[29],"networks":[31,115],"for":[32,201,234],"specific":[33],"organisms,":[34,37],"sets":[35],"reactions,":[38,126],"enzymes,":[39,127],"or":[40,122],"KEGG":[41,50,120,162],"Orthology":[42],"(KO)":[43],"identifiers.":[44],"By":[45],"retrieving":[46],"the":[49,94,104,161,165],"database,":[51],"helps":[53],"users":[54],"visualize":[55],"analyze":[57],"complex":[58],"interactions":[60],"efficiently.":[61],"RESULTS:":[62],"computes":[64],"two":[65,150],"models:":[66],"reaction":[68,78,95],"graph":[69,75,79,96],"directed":[73],"acyclic":[74],"(m-DAG).":[76],"represents":[80],"reactions":[81],"as":[82,89],"nodes":[83,107],"metabolite":[85],"flow":[86],"between":[87,177],"them":[88],"edges.":[90],"m-DAG":[92],"simplifies":[93],"collapsing":[98],"strongly":[99],"connected":[100],"components,":[101],"significantly":[102],"reducing":[103],"number":[105],"while":[108],"maintaining":[109],"connectivity.":[110],"can":[112],"generate":[113,216],"various":[117],"inputs,":[118],"including":[119,143],"organisms":[121,159],"custom":[123],"(e.g.,":[125],"KOs).":[128],"displays":[131],"these":[132],"models":[133],"on":[134,190],"an":[135,153,196],"interactive":[136],"web":[137],"page":[138],"provides":[140],"downloadable":[141],"files,":[142],"visualizations.":[145],"was":[147],"tested":[148],"using":[149],"datasets.":[151],"In":[152,170],"eukaryotic":[154],"analysis,":[155,228],"it":[156,230],"successfully":[157],"classified":[158],"database":[163],"at":[164],"kingdom":[166],"phylum":[168],"levels.":[169],"microbiome":[172],"study,":[173],"accurately":[175],"distinguished":[176],"Western":[178],"Korean":[180],"diets":[181],"categorized":[183],"individuals":[184],"weight":[186],"loss":[187],"outcomes":[188],"based":[189],"dietary":[191],"interventions.":[192],"CONCLUSION:":[193],"offers":[195],"effective":[197],"versatile":[199],"solution":[200],"diverse":[206],"sources,":[208],"enabling":[209],"large-scale":[210],"biological":[211,235],"comparisons.":[212],"Its":[213],"ability":[214],"synthetic":[217],"metabolisms":[218],"its":[220],"broad":[221],"application,":[222],"taxonomy":[224],"classification":[225],"diet":[227],"make":[229],"valuable":[232],"research.":[236],"available":[239],"online,":[240],"with":[241],"user":[242],"support":[243],"provided":[244],"via":[245],"comprehensive":[247],"guide.":[248],"MetaDAG:":[249],"https://bioinfo.uib.es/metadag/":[250],"User":[251],"guide:":[252],"https://biocom-uib.github.io/MetaDag/.":[253]},"counts_by_year":[{"year":2026,"cited_by_count":5}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
