{"id":"https://openalex.org/W4407565468","doi":"https://doi.org/10.1186/s12859-025-06034-2","title":"CamITree: a streamlined software for phylogenetic analysis of viral and mitochondrial genomes","display_name":"CamITree: a streamlined software for phylogenetic analysis of viral and mitochondrial genomes","publication_year":2025,"publication_date":"2025-02-14","ids":{"openalex":"https://openalex.org/W4407565468","doi":"https://doi.org/10.1186/s12859-025-06034-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/39953425"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-025-06034-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06034-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06034-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06034-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100681078","display_name":"Peng Sun","orcid":"https://orcid.org/0000-0001-7648-4548"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Sun","raw_affiliation_strings":["College of Fisheries, Huazhong Agricultural University, Wuhan, 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Fisheries, Huazhong Agricultural University, Wuhan, 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070570645","display_name":"Yu Yang","orcid":"https://orcid.org/0000-0002-2378-910X"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Yang","raw_affiliation_strings":["College of Life Sciences and Technology, Huazhong Agricultural University, Wuhan, 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences and Technology, Huazhong Agricultural University, Wuhan, 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Mengjie Yuan","orcid":null},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengjie Yuan","raw_affiliation_strings":["College of Fisheries, Huazhong Agricultural University, Wuhan, 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Fisheries, Huazhong Agricultural University, Wuhan, 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034159514","display_name":"Qin Tang","orcid":"https://orcid.org/0000-0002-2997-084X"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qin Tang","raw_affiliation_strings":["College of Fisheries, Huazhong Agricultural University, Wuhan, 430070, China. tangqin@mail.hzau.edu.cn","College of Fisheries, Huazhong Agricultural University, Wuhan, 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Fisheries, Huazhong Agricultural University, Wuhan, 430070, China. tangqin@mail.hzau.edu.cn","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"College of Fisheries, Huazhong Agricultural University, Wuhan, 430070, China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.5726,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.63268203,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"26","issue":"1","first_page":"53","last_page":"53"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8761000037193298,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8761000037193298,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.0272000003606081,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.019200000911951065,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7869600057601929},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.564337432384491},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5428090691566467},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47056007385253906},{"id":"https://openalex.org/keywords/computational-phylogenetics","display_name":"Computational phylogenetics","score":0.4667501747608185},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46153390407562256},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4500020146369934},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.44635117053985596},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.41658663749694824},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39911890029907227},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3459157347679138},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23141130805015564},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14605048298835754},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11757996678352356},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08685463666915894}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7869600057601929},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.564337432384491},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5428090691566467},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47056007385253906},{"id":"https://openalex.org/C41168302","wikidata":"https://www.wikidata.org/wiki/Q3772859","display_name":"Computational phylogenetics","level":5,"score":0.4667501747608185},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46153390407562256},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4500020146369934},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44635117053985596},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.41658663749694824},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39911890029907227},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3459157347679138},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23141130805015564},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14605048298835754},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11757996678352356},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08685463666915894}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054629","descriptor_name":"Genome, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054629","descriptor_name":"Genome, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054629","descriptor_name":"Genome, Mitochondrial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D054629","descriptor_name":"Genome, Mitochondrial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-025-06034-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06034-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06034-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39953425","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39953425","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:99164f98ba82491eaa10f85b5f6473ad","is_oa":true,"landing_page_url":"https://doaj.org/article/99164f98ba82491eaa10f85b5f6473ad","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 26, Iss 1, Pp 1-14 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11829546","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11829546","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-025-06034-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-025-06034-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-025-06034-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7041194686","display_name":null,"funder_award_id":"2022YFD2400901","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320324775","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4407565468.pdf","grobid_xml":"https://content.openalex.org/works/W4407565468.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1902522291","https://openalex.org/W1966338217","https://openalex.org/W1983102293","https://openalex.org/W1988652743","https://openalex.org/W2027561690","https://openalex.org/W2048508842","https://openalex.org/W2056568233","https://openalex.org/W2068225247","https://openalex.org/W2070767907","https://openalex.org/W2075479283","https://openalex.org/W2087760337","https://openalex.org/W2098943145","https://openalex.org/W2099744871","https://openalex.org/W2111647009","https://openalex.org/W2115888213","https://openalex.org/W2118526609","https://openalex.org/W2127774996","https://openalex.org/W2128880918","https://openalex.org/W2132349644","https://openalex.org/W2145562754","https://openalex.org/W2148698435","https://openalex.org/W2170587743","https://openalex.org/W2614081736","https://openalex.org/W2785071485","https://openalex.org/W2792034759","https://openalex.org/W2799524357","https://openalex.org/W2801361050","https://openalex.org/W2888308804","https://openalex.org/W2904608041","https://openalex.org/W2949367299","https://openalex.org/W2951464304","https://openalex.org/W2979811825","https://openalex.org/W2996913857","https://openalex.org/W3005235420","https://openalex.org/W3008892108","https://openalex.org/W3025857586","https://openalex.org/W3088221032","https://openalex.org/W4286110908","https://openalex.org/W4302763624","https://openalex.org/W4310555551","https://openalex.org/W4386961515"],"related_works":["https://openalex.org/W85430217","https://openalex.org/W1532885630","https://openalex.org/W4389053046","https://openalex.org/W2363720861","https://openalex.org/W2800044728","https://openalex.org/W3088015816","https://openalex.org/W2534129866","https://openalex.org/W4287661213","https://openalex.org/W1997441498","https://openalex.org/W2950925648"],"abstract_inverted_index":{"BACKGROUND:":[0],"Over":[1],"the":[2,5,27,36,43,57,123,145,156,166,179],"past":[3],"decade,":[4],"continuous":[6],"and":[7,31,45,74,102,122,132,142,177,197],"rapid":[8],"advances":[9],"in":[10,54,56,140,193],"bioinformatics":[11],"have":[12],"led":[13],"to":[14,96,175,204],"an":[15],"increasingly":[16],"common":[17],"use":[18,28],"of":[19,29,38,47,59,72,125,181,188],"molecular":[20],"sequence":[21,118],"comparison":[22],"for":[23,62,77,100,165],"phylogenetic":[24,39,49,78,98,126,184],"analysis.":[25,79],"However,":[26],"multi-software":[30],"cross-platform":[32],"strategies":[33],"has":[34,162],"increased":[35],"complexity":[37],"tree":[40],"estimation.":[41],"Therefore,":[42],"development":[44],"application":[46],"streamlined":[48],"analysis":[50,99,173],"tools":[51,76,174],"are":[52],"growing":[53],"significance":[55],"field":[58],"biology.":[60],"Particularly":[61],"genomes":[63],"with":[64,212],"relatively":[65],"short":[66],"sequences,":[67],"there":[68],"is":[69,217],"a":[70,91,111,150,213],"lack":[71],"simple":[73],"integrative":[75],"RESULTS:":[80],"In":[81],"this":[82],"study,":[83],"we":[84],"present":[85],"CamlTree":[86,109,137,160],"(Concatenated":[87],"alignments":[88],"maximum-likelihood":[89,130],"tree),":[90],"user-friendly":[92,152],"desktop":[93],"software":[94,161,189],"designed":[95],"simplify":[97,178],"viral":[101],"mitochondrial":[103],"genomes,":[104],"ultimately":[105],"facilitating":[106],"related":[107],"research.":[108],"provides":[110],"workflow":[112],"including":[113],"gene":[114],"concatenation":[115],"(or":[116],"coalescence),":[117],"alignment,":[119],"alignment":[120],"optimization,":[121],"estimation":[124],"trees":[127],"using":[128,144],"both":[129],"(ML)":[131],"Bayesian":[133],"inference":[134],"(BI)":[135],"methods.":[136],"was":[138],"written":[139],"TypeScript":[141],"developed":[143],"Electron":[146],"framework.":[147,158],"It":[148,169],"offers":[149],"primarily":[151],"interface":[153],"based":[154],"on":[155],"React":[157],"CONCLUSIONS:":[159],"been":[163],"released":[164],"Windows":[167],"OS.":[168],"integrates":[170],"several":[171],"popular":[172],"optimize":[176],"process":[180],"estimating":[182],"polygenic":[183],"trees.":[185],"The":[186,209],"establishment":[187],"can":[190],"assist":[191],"researchers":[192],"reducing":[194],"their":[195,206],"workload":[196],"enhancing":[198],"data":[199],"processing":[200],"efficiency,":[201],"enabling":[202],"them":[203],"expedite":[205],"research":[207],"progress.":[208],"software,":[210],"along":[211],"detailed":[214],"user":[215],"manual,":[216],"available":[218],"at":[219],"https://github.com/BioCrossCoder/camltree":[220],".":[221]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-06-12T08:23:45.883708","created_date":"2025-10-10T00:00:00"}