{"id":"https://openalex.org/W4406993353","doi":"https://doi.org/10.1186/s12859-024-06008-w","title":"Biomedical named entity recognition using improved green anaconda-assisted Bi-GRU-based hierarchical ResNet model","display_name":"Biomedical named entity recognition using improved green anaconda-assisted Bi-GRU-based hierarchical ResNet model","publication_year":2025,"publication_date":"2025-01-30","ids":{"openalex":"https://openalex.org/W4406993353","doi":"https://doi.org/10.1186/s12859-024-06008-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/39885428"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-06008-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-06008-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-06008-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-06008-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107198707","display_name":"Ram Chandra Bhushan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210129039","display_name":"Transport Corporation of India (India)","ror":"https://ror.org/03kb0fc56","country_code":"IN","type":"company","lineage":["https://openalex.org/I4210129039"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Ram Chandra Bhushan","raw_affiliation_strings":["Software Architect, Alstom Transport India Limited, Bengaluru, India"],"affiliations":[{"raw_affiliation_string":"Software Architect, Alstom Transport India Limited, Bengaluru, India","institution_ids":["https://openalex.org/I4210129039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022732819","display_name":"Rakesh Kumar Donthi","orcid":"https://orcid.org/0000-0002-8513-861X"},"institutions":[{"id":"https://openalex.org/I885392262","display_name":"GITAM University","ror":"https://ror.org/0440p1d37","country_code":"IN","type":"education","lineage":["https://openalex.org/I885392262"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Rakesh Kumar Donthi","raw_affiliation_strings":["Department of CSE GITAM (Deemed to be) UNIVERSITY Hyderabad, Rudraram, India"],"affiliations":[{"raw_affiliation_string":"Department of CSE GITAM (Deemed to be) UNIVERSITY Hyderabad, Rudraram, India","institution_ids":["https://openalex.org/I885392262"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088590130","display_name":"Yojitha Chilukuri","orcid":null},"institutions":[{"id":"https://openalex.org/I1313298211","display_name":"St. Jude Children's Research Hospital","ror":"https://ror.org/02r3e0967","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1313298211","https://openalex.org/I2802152183"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yojitha Chilukuri","raw_affiliation_strings":["St. Jude Childrens Cancer Research Hospital, 262 Danny Thomas Place, Memphis, TN, 38105, USA"],"affiliations":[{"raw_affiliation_string":"St. Jude Childrens Cancer Research Hospital, 262 Danny Thomas Place, Memphis, TN, 38105, USA","institution_ids":["https://openalex.org/I1313298211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014948245","display_name":"Ulligaddala Srinivasarao","orcid":null},"institutions":[{"id":"https://openalex.org/I885392262","display_name":"GITAM University","ror":"https://ror.org/0440p1d37","country_code":"IN","type":"education","lineage":["https://openalex.org/I885392262"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ulligaddala Srinivasarao","raw_affiliation_strings":["Department of CSE GITAM (Deemed to be) UNIVERSITY Hyderabad, Rudraram, India. ulligaddalasrinu@gmail.com","Department of CSE GITAM (Deemed to be) UNIVERSITY Hyderabad, Rudraram, India"],"affiliations":[{"raw_affiliation_string":"Department of CSE GITAM (Deemed to be) UNIVERSITY Hyderabad, Rudraram, India. ulligaddalasrinu@gmail.com","institution_ids":["https://openalex.org/I885392262"]},{"raw_affiliation_string":"Department of CSE GITAM (Deemed to be) UNIVERSITY Hyderabad, Rudraram, India","institution_ids":["https://openalex.org/I885392262"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028379750","display_name":"Polisetty Swetha","orcid":"https://orcid.org/0000-0001-9748-2103"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Polisetty Swetha","raw_affiliation_strings":["Department of Information Technology, Vardhaman College of Engineering, Shamshabad, Hyderabad, India"],"affiliations":[{"raw_affiliation_string":"Department of Information Technology, Vardhaman College of Engineering, Shamshabad, Hyderabad, India","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5107198707"],"corresponding_institution_ids":["https://openalex.org/I4210129039"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":11.3548,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.97835806,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"26","issue":"1","first_page":"34","last_page":"34"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9696000218391418,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8263372182846069},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.658825159072876},{"id":"https://openalex.org/keywords/wordnet","display_name":"WordNet","score":0.5612422823905945},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.529576301574707},{"id":"https://openalex.org/keywords/lexical-analysis","display_name":"Lexical analysis","score":0.46185219287872314},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.44438815116882324},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3617302179336548}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8263372182846069},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.658825159072876},{"id":"https://openalex.org/C157659113","wikidata":"https://www.wikidata.org/wiki/Q533822","display_name":"WordNet","level":2,"score":0.5612422823905945},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.529576301574707},{"id":"https://openalex.org/C176982825","wikidata":"https://www.wikidata.org/wiki/Q835922","display_name":"Lexical analysis","level":2,"score":0.46185219287872314},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.44438815116882324},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3617302179336548},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017821","descriptor_name":"Boidae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017821","descriptor_name":"Boidae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017821","descriptor_name":"Boidae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017821","descriptor_name":"Boidae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017821","descriptor_name":"Boidae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-024-06008-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-06008-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-06008-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39885428","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39885428","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11780922","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11780922","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11780922/pdf/12859_2024_Article_6008.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:c872bdf1bc914a2c910b14a087c56825","is_oa":true,"landing_page_url":"https://doaj.org/article/c872bdf1bc914a2c910b14a087c56825","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 26, Iss 1, Pp 1-34 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-06008-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-06008-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-06008-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8199999928474426,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4406993353.pdf","grobid_xml":"https://content.openalex.org/works/W4406993353.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1987803244","https://openalex.org/W2169099542","https://openalex.org/W2346452181","https://openalex.org/W2613831280","https://openalex.org/W2889775157","https://openalex.org/W3002226419","https://openalex.org/W3017117251","https://openalex.org/W3024259923","https://openalex.org/W3082330004","https://openalex.org/W3104015140","https://openalex.org/W3107083523","https://openalex.org/W3134968670","https://openalex.org/W3195132375","https://openalex.org/W4206380771","https://openalex.org/W4210800588","https://openalex.org/W4221142212","https://openalex.org/W4224267366","https://openalex.org/W4283318325","https://openalex.org/W4308055480","https://openalex.org/W4310522573","https://openalex.org/W4311422836","https://openalex.org/W4312106126","https://openalex.org/W4313594223","https://openalex.org/W4313827664","https://openalex.org/W4318559756","https://openalex.org/W4319594167","https://openalex.org/W4320018401","https://openalex.org/W4322012859","https://openalex.org/W4324141208","https://openalex.org/W4362732946","https://openalex.org/W4367310581","https://openalex.org/W4377043947","https://openalex.org/W4379057112","https://openalex.org/W4385565028","https://openalex.org/W4386798399","https://openalex.org/W4387428003","https://openalex.org/W4387490026","https://openalex.org/W4391108674","https://openalex.org/W4391847874","https://openalex.org/W4391930738","https://openalex.org/W4392018827","https://openalex.org/W4392813396","https://openalex.org/W4392925731","https://openalex.org/W4393443048","https://openalex.org/W4401836507"],"related_works":["https://openalex.org/W1499795620","https://openalex.org/W112738600","https://openalex.org/W252296781","https://openalex.org/W2135707795","https://openalex.org/W1537146566","https://openalex.org/W2331034580","https://openalex.org/W1517978361","https://openalex.org/W4376623067","https://openalex.org/W3002840018","https://openalex.org/W2040535673"],"abstract_inverted_index":{"To":[0],"improve":[1],"the":[2,6,9,25,29,34,57],"training":[3,24],"phase":[4],"of":[5,46],"IGa-BiHR":[7],"BNERM,":[8],"Improved":[10],"Green":[11],"Anaconda":[12],"Optimization":[13],"technique":[14],"was":[15,31],"used":[16],"to":[17],"select":[18],"optimal":[19],"weight":[20],"parameter":[21],"coefficients":[22],"for":[23],"model":[26,30,49],"parameters.":[27],"After":[28],"tested":[32],"using":[33],"MACCROBAT":[35],"dataset,":[36],"it":[37],"outperformed":[38],"previous":[39],"models":[40],"with":[41],"a":[42],"tremendous":[43],"accuracy":[44],"rate":[45],"99.11%.":[47],"This":[48],"effectively":[50],"and":[51],"accurately":[52],"identifies":[53],"biomedical":[54],"names":[55],"within":[56],"text,":[58],"significantly":[59],"advancing":[60],"this":[61],"field.":[62]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
