{"id":"https://openalex.org/W4406699368","doi":"https://doi.org/10.1186/s12859-024-05991-4","title":"A comprehensive survey of scoring functions for protein docking models","display_name":"A comprehensive survey of scoring functions for protein docking models","publication_year":2025,"publication_date":"2025-01-22","ids":{"openalex":"https://openalex.org/W4406699368","doi":"https://doi.org/10.1186/s12859-024-05991-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/39844036"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05991-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05991-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05991-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05991-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014367930","display_name":"Azam Shirali","orcid":"https://orcid.org/0000-0003-1426-6478"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Azam Shirali","raw_affiliation_strings":["Bioinformatics Research Group (BioRG), Knight Foundation School of Computing and Information Sciences, Florida International University, 11200 SW 8th 10 St, Miami, 33199, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group (BioRG), Knight Foundation School of Computing and Information Sciences, Florida International University, 11200 SW 8th 10 St, Miami, 33199, USA","institution_ids":["https://openalex.org/I19700959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013657335","display_name":"Vitalii Stebliankin","orcid":"https://orcid.org/0000-0001-9377-0263"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vitalii Stebliankin","raw_affiliation_strings":["Bioinformatics Research Group (BioRG), Knight Foundation School of Computing and Information Sciences, Florida International University, 11200 SW 8th 10 St, Miami, 33199, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group (BioRG), Knight Foundation School of Computing and Information Sciences, Florida International University, 11200 SW 8th 10 St, Miami, 33199, USA","institution_ids":["https://openalex.org/I19700959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115981114","display_name":"Ukesh Karki","orcid":"https://orcid.org/0009-0001-9929-7574"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ukesh Karki","raw_affiliation_strings":["Department of Physics, Florida International University, 11200 SW 8th 10 St, Miami, 33199, USA"],"affiliations":[{"raw_affiliation_string":"Department of Physics, Florida International University, 11200 SW 8th 10 St, Miami, 33199, USA","institution_ids":["https://openalex.org/I19700959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048508420","display_name":"Jimeng Shi","orcid":null},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jimeng Shi","raw_affiliation_strings":["Bioinformatics Research Group (BioRG), Knight Foundation School of Computing and Information Sciences, Florida International University, 11200 SW 8th 10 St, Miami, 33199, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group (BioRG), Knight Foundation School of Computing and Information Sciences, Florida International University, 11200 SW 8th 10 St, Miami, 33199, USA","institution_ids":["https://openalex.org/I19700959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071186045","display_name":"Prem P. Chapagain","orcid":"https://orcid.org/0000-0002-0999-4975"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Prem Chapagain","raw_affiliation_strings":["Biomolecular Sciences Institute, Florida International University, 11200 SW 8th St, Miami, 33199, USA","Department of Physics, Florida International University, 11200 SW 8th 10 St, Miami, 33199, USA"],"affiliations":[{"raw_affiliation_string":"Biomolecular Sciences Institute, Florida International University, 11200 SW 8th St, Miami, 33199, USA","institution_ids":["https://openalex.org/I19700959"]},{"raw_affiliation_string":"Department of Physics, Florida International University, 11200 SW 8th 10 St, Miami, 33199, USA","institution_ids":["https://openalex.org/I19700959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068890173","display_name":"Giri Narasimhan","orcid":"https://orcid.org/0000-0003-0535-4871"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Giri Narasimhan","raw_affiliation_strings":["Bioinformatics Research Group (BioRG), Knight Foundation School of Computing and Information Sciences, Florida International University, 11200 SW 8th 10 St, Miami, 33199, USA. giri@fiu.edu","Biomolecular Sciences Institute, Florida International University, 11200 SW 8th St, Miami, 33199, USA. giri@fiu.edu","Bioinformatics Research Group (BioRG), Knight Foundation School of Computing and Information Sciences, Florida International University, 11200 SW 8th 10 St, Miami, 33199, USA","Biomolecular Sciences Institute, Florida International University, 11200 SW 8th St, Miami, 33199, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group (BioRG), Knight Foundation School of Computing and Information Sciences, Florida International University, 11200 SW 8th 10 St, Miami, 33199, USA. giri@fiu.edu","institution_ids":["https://openalex.org/I19700959"]},{"raw_affiliation_string":"Biomolecular Sciences Institute, Florida International University, 11200 SW 8th St, Miami, 33199, USA. giri@fiu.edu","institution_ids":["https://openalex.org/I19700959"]},{"raw_affiliation_string":"Bioinformatics Research Group (BioRG), Knight Foundation School of Computing and Information Sciences, Florida International University, 11200 SW 8th 10 St, Miami, 33199, USA","institution_ids":["https://openalex.org/I19700959"]},{"raw_affiliation_string":"Biomolecular Sciences Institute, Florida International University, 11200 SW 8th St, Miami, 33199, USA","institution_ids":["https://openalex.org/I19700959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5014367930"],"corresponding_institution_ids":["https://openalex.org/I19700959"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":28.2636,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.99637487,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"1","first_page":"25","last_page":"25"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.7472540736198425},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6538440585136414},{"id":"https://openalex.org/keywords/macromolecular-docking","display_name":"Macromolecular docking","score":0.6493701934814453},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.585594654083252},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5722664594650269},{"id":"https://openalex.org/keywords/strengths-and-weaknesses","display_name":"Strengths and weaknesses","score":0.5657713413238525},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.49017152190208435},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.45039692521095276},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39899176359176636},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32189953327178955},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3019072711467743},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18943935632705688},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08593499660491943}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7472540736198425},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6538440585136414},{"id":"https://openalex.org/C116887118","wikidata":"https://www.wikidata.org/wiki/Q836685","display_name":"Macromolecular docking","level":3,"score":0.6493701934814453},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.585594654083252},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5722664594650269},{"id":"https://openalex.org/C63882131","wikidata":"https://www.wikidata.org/wiki/Q17122954","display_name":"Strengths and weaknesses","level":2,"score":0.5657713413238525},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.49017152190208435},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.45039692521095276},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39899176359176636},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32189953327178955},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3019072711467743},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18943935632705688},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08593499660491943},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-024-05991-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05991-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05991-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39844036","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39844036","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11755896","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11755896","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11755896/pdf/12859_2024_Article_5991.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:1a094963d4854819a720c51d50e7f240","is_oa":true,"landing_page_url":"https://doaj.org/article/1a094963d4854819a720c51d50e7f240","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 26, Iss 1, Pp 1-25 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05991-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05991-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05991-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3269309973","display_name":null,"funder_award_id":"2118329","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6755165505","display_name":null,"funder_award_id":"award","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G842482667","display_name":null,"funder_award_id":"GAANN","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320308835","display_name":"John S. and James L. Knight Foundation","ror":"https://ror.org/00mn6be63"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4406699368.pdf"},"referenced_works_count":99,"referenced_works":["https://openalex.org/W1030883578","https://openalex.org/W1588645461","https://openalex.org/W1907442748","https://openalex.org/W1968430567","https://openalex.org/W1979284950","https://openalex.org/W1980120676","https://openalex.org/W1981276685","https://openalex.org/W1985210344","https://openalex.org/W2005303195","https://openalex.org/W2008505479","https://openalex.org/W2014952106","https://openalex.org/W2017117646","https://openalex.org/W2018410079","https://openalex.org/W2036309115","https://openalex.org/W2038542598","https://openalex.org/W2064660701","https://openalex.org/W2083734879","https://openalex.org/W2087485814","https://openalex.org/W2097117768","https://openalex.org/W2100025509","https://openalex.org/W2105572387","https://openalex.org/W2106210646","https://openalex.org/W2110943691","https://openalex.org/W2111387452","https://openalex.org/W2112320038","https://openalex.org/W2114194071","https://openalex.org/W2115540209","https://openalex.org/W2116341502","https://openalex.org/W2116515668","https://openalex.org/W2118621584","https://openalex.org/W2119333768","https://openalex.org/W2120200143","https://openalex.org/W2124981562","https://openalex.org/W2129454543","https://openalex.org/W2130479394","https://openalex.org/W2131063642","https://openalex.org/W2132641846","https://openalex.org/W2140522686","https://openalex.org/W2140673705","https://openalex.org/W2145793759","https://openalex.org/W2151109780","https://openalex.org/W2151460035","https://openalex.org/W2151581834","https://openalex.org/W2153255725","https://openalex.org/W2153983456","https://openalex.org/W2155796229","https://openalex.org/W2157273785","https://openalex.org/W2157991822","https://openalex.org/W2160868144","https://openalex.org/W2164255317","https://openalex.org/W2170564629","https://openalex.org/W2255466643","https://openalex.org/W2315317366","https://openalex.org/W2345139079","https://openalex.org/W2420141398","https://openalex.org/W2551393996","https://openalex.org/W2554019130","https://openalex.org/W2559466477","https://openalex.org/W2572080171","https://openalex.org/W2578119541","https://openalex.org/W2590203313","https://openalex.org/W2607037799","https://openalex.org/W2791443419","https://openalex.org/W2898391595","https://openalex.org/W2915344963","https://openalex.org/W2921473648","https://openalex.org/W2950365860","https://openalex.org/W2963502130","https://openalex.org/W2983453316","https://openalex.org/W2990689232","https://openalex.org/W2992752586","https://openalex.org/W2996827397","https://openalex.org/W3014616217","https://openalex.org/W3015438624","https://openalex.org/W3020257619","https://openalex.org/W3047882387","https://openalex.org/W3087491618","https://openalex.org/W3116323439","https://openalex.org/W3123226037","https://openalex.org/W3125205424","https://openalex.org/W3164107346","https://openalex.org/W3172747904","https://openalex.org/W3198923619","https://openalex.org/W3212562354","https://openalex.org/W3216616254","https://openalex.org/W4206247924","https://openalex.org/W4212886242","https://openalex.org/W4251002170","https://openalex.org/W4291237382","https://openalex.org/W4293475204","https://openalex.org/W4309862248","https://openalex.org/W4313476801","https://openalex.org/W4313826102","https://openalex.org/W4382982095","https://openalex.org/W4389980083","https://openalex.org/W4392883366","https://openalex.org/W4396721167","https://openalex.org/W6600961131","https://openalex.org/W6601403687"],"related_works":["https://openalex.org/W2585040066","https://openalex.org/W2996908194","https://openalex.org/W2162380182","https://openalex.org/W3005126098","https://openalex.org/W2157273785","https://openalex.org/W2862730334","https://openalex.org/W3011103292","https://openalex.org/W1489925612","https://openalex.org/W1974422922","https://openalex.org/W4309353019"],"abstract_inverted_index":{"We":[0],"evaluate":[1],"the":[2,23],"strengths":[3],"and":[4,8,15],"weaknesses":[5],"of":[6],"classical":[7],"deep":[9],"learning-based":[10],"approaches":[11],"across":[12],"seven":[13],"public":[14],"popular":[16],"datasets":[17],"to":[18],"aid":[19],"researchers":[20],"in":[21,26],"understanding":[22],"progress":[24],"made":[25],"this":[27],"field.":[28]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":16}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
