{"id":"https://openalex.org/W4403535708","doi":"https://doi.org/10.1186/s12859-024-05948-7","title":"mulea: An R package for enrichment analysis using multiple ontologies and empirical false discovery rate","display_name":"mulea: An R package for enrichment analysis using multiple ontologies and empirical false discovery rate","publication_year":2024,"publication_date":"2024-10-18","ids":{"openalex":"https://openalex.org/W4403535708","doi":"https://doi.org/10.1186/s12859-024-05948-7","pmid":"https://pubmed.ncbi.nlm.nih.gov/39425047"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05948-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05948-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05948-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05948-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5094045011","display_name":"Cezary Turek","orcid":"https://orcid.org/0000-0002-1445-5378"},"institutions":[{"id":"https://openalex.org/I2799300731","display_name":"Norwich Research Park","ror":"https://ror.org/0062dz060","country_code":"GB","type":"archive","lineage":["https://openalex.org/I2799300731"]},{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Cezary Turek","raw_affiliation_strings":["Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK"],"affiliations":[{"raw_affiliation_string":"Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK","institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I4210100714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027550466","display_name":"M\u00e1rton \u00d6lbei","orcid":"https://orcid.org/0000-0002-4903-6237"},"institutions":[{"id":"https://openalex.org/I2799300731","display_name":"Norwich Research Park","ror":"https://ror.org/0062dz060","country_code":"GB","type":"archive","lineage":["https://openalex.org/I2799300731"]},{"id":"https://openalex.org/I2801748203","display_name":"Hammersmith Hospital","ror":"https://ror.org/05jg8yp15","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I153355300","https://openalex.org/I2801748203"]},{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"M\u00e1rton \u00d6lbei","raw_affiliation_strings":["Department of Metabolism, Digestion and Reproduction, Imperial College London, The Commonwealth Building, The Hammersmith Hospital, Du Cane Road, London, W12 0NN, UK","Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK"],"affiliations":[{"raw_affiliation_string":"Department of Metabolism, Digestion and Reproduction, Imperial College London, The Commonwealth Building, The Hammersmith Hospital, Du Cane Road, London, W12 0NN, UK","institution_ids":["https://openalex.org/I2801748203","https://openalex.org/I47508984"]},{"raw_affiliation_string":"Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK","institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I4210100714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086462603","display_name":"Tam\u00e1s Stirling","orcid":"https://orcid.org/0000-0002-8964-6443"},"institutions":[{"id":"https://openalex.org/I227486990","display_name":"University of Szeged","ror":"https://ror.org/01pnej532","country_code":"HU","type":"education","lineage":["https://openalex.org/I227486990"]},{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210103004","display_name":"Institute of Biochemistry","ror":"https://ror.org/022dvs210","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I4210103004","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Tam\u00e1s Stirling","raw_affiliation_strings":["Doctoral School of Biology, University of Szeged, K\u00f6z\u00e9p Fasor 52, 6726, Szeged, Hungary","HCEMM-BRC Metabolic Systems Biology Research Group, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary","Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Centre, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary"],"affiliations":[{"raw_affiliation_string":"Doctoral School of Biology, University of Szeged, K\u00f6z\u00e9p Fasor 52, 6726, Szeged, Hungary","institution_ids":["https://openalex.org/I227486990"]},{"raw_affiliation_string":"HCEMM-BRC Metabolic Systems Biology Research Group, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary","institution_ids":["https://openalex.org/I2800351701"]},{"raw_affiliation_string":"Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Centre, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary","institution_ids":["https://openalex.org/I2800351701","https://openalex.org/I4210103004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020937405","display_name":"Gergely Fekete","orcid":"https://orcid.org/0000-0001-9939-4860"},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210103004","display_name":"Institute of Biochemistry","ror":"https://ror.org/022dvs210","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I4210103004","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Gergely Fekete","raw_affiliation_strings":["HCEMM-BRC Metabolic Systems Biology Research Group, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary","Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Centre, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary"],"affiliations":[{"raw_affiliation_string":"HCEMM-BRC Metabolic Systems Biology Research Group, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary","institution_ids":["https://openalex.org/I2800351701"]},{"raw_affiliation_string":"Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Centre, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary","institution_ids":["https://openalex.org/I2800351701","https://openalex.org/I4210103004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087738988","display_name":"Ervin Tasn\u00e1di","orcid":"https://orcid.org/0000-0002-4713-5397"},"institutions":[{"id":"https://openalex.org/I227486990","display_name":"University of Szeged","ror":"https://ror.org/01pnej532","country_code":"HU","type":"education","lineage":["https://openalex.org/I227486990"]},{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210103004","display_name":"Institute of Biochemistry","ror":"https://ror.org/022dvs210","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I4210103004","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Ervin Tasn\u00e1di","raw_affiliation_strings":["Doctoral School of Computer Science, University of Szeged, \u00c1rp\u00e1d T\u00e9r 2, 6720, Szeged, Hungary","Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Centre, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary"],"affiliations":[{"raw_affiliation_string":"Doctoral School of Computer Science, University of Szeged, \u00c1rp\u00e1d T\u00e9r 2, 6720, Szeged, Hungary","institution_ids":["https://openalex.org/I227486990"]},{"raw_affiliation_string":"Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Centre, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary","institution_ids":["https://openalex.org/I2800351701","https://openalex.org/I4210103004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112149026","display_name":"Leila Gul","orcid":null},"institutions":[{"id":"https://openalex.org/I2799300731","display_name":"Norwich Research Park","ror":"https://ror.org/0062dz060","country_code":"GB","type":"archive","lineage":["https://openalex.org/I2799300731"]},{"id":"https://openalex.org/I2801748203","display_name":"Hammersmith Hospital","ror":"https://ror.org/05jg8yp15","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I153355300","https://openalex.org/I2801748203"]},{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Leila Gul","raw_affiliation_strings":["Department of Metabolism, Digestion and Reproduction, Imperial College London, The Commonwealth Building, The Hammersmith Hospital, Du Cane Road, London, W12 0NN, UK","Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK"],"affiliations":[{"raw_affiliation_string":"Department of Metabolism, Digestion and Reproduction, Imperial College London, The Commonwealth Building, The Hammersmith Hospital, Du Cane Road, London, W12 0NN, UK","institution_ids":["https://openalex.org/I2801748203","https://openalex.org/I47508984"]},{"raw_affiliation_string":"Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK","institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I4210100714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015157681","display_name":"Bal\u00e1zs Boh\u00e1r","orcid":"https://orcid.org/0000-0002-3033-5448"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I2801748203","display_name":"Hammersmith Hospital","ror":"https://ror.org/05jg8yp15","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I153355300","https://openalex.org/I2801748203"]},{"id":"https://openalex.org/I4210103004","display_name":"Institute of Biochemistry","ror":"https://ror.org/022dvs210","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I4210103004","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB","HU"],"is_corresponding":false,"raw_author_name":"Bal\u00e1zs Boh\u00e1r","raw_affiliation_strings":["Department of Genetics, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University, P\u00e1zm\u00e1ny P. Stny. 1/C, 1117, Budapest, Hungary","Department of Metabolism, Digestion and Reproduction, Imperial College London, The Commonwealth Building, The Hammersmith Hospital, Du Cane Road, London, W12 0NN, UK","Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Centre, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University, P\u00e1zm\u00e1ny P. Stny. 1/C, 1117, Budapest, Hungary","institution_ids":["https://openalex.org/I106118109"]},{"raw_affiliation_string":"Department of Metabolism, Digestion and Reproduction, Imperial College London, The Commonwealth Building, The Hammersmith Hospital, Du Cane Road, London, W12 0NN, UK","institution_ids":["https://openalex.org/I2801748203","https://openalex.org/I47508984"]},{"raw_affiliation_string":"Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Centre, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary","institution_ids":["https://openalex.org/I2800351701","https://openalex.org/I4210103004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031981177","display_name":"Bal\u00e1zs Papp","orcid":"https://orcid.org/0000-0003-3093-8852"},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210103004","display_name":"Institute of Biochemistry","ror":"https://ror.org/022dvs210","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I4210103004","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Bal\u00e1zs Papp","raw_affiliation_strings":["HCEMM-BRC Metabolic Systems Biology Research Group, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary","Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Centre, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary"],"affiliations":[{"raw_affiliation_string":"HCEMM-BRC Metabolic Systems Biology Research Group, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary","institution_ids":["https://openalex.org/I2800351701"]},{"raw_affiliation_string":"Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Centre, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary","institution_ids":["https://openalex.org/I2800351701","https://openalex.org/I4210103004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036884183","display_name":"Wiktor Jurkowski","orcid":"https://orcid.org/0000-0002-7820-1991"},"institutions":[{"id":"https://openalex.org/I2799300731","display_name":"Norwich Research Park","ror":"https://ror.org/0062dz060","country_code":"GB","type":"archive","lineage":["https://openalex.org/I2799300731"]},{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Wiktor Jurkowski","raw_affiliation_strings":["Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK"],"affiliations":[{"raw_affiliation_string":"Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK","institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I4210100714"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005200422","display_name":"Eszter Ari","orcid":"https://orcid.org/0000-0001-7774-1067"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210103004","display_name":"Institute of Biochemistry","ror":"https://ror.org/022dvs210","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I4210103004","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Eszter Ari","raw_affiliation_strings":["Department of Genetics, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University, P\u00e1zm\u00e1ny P. Stny. 1/C, 1117, Budapest, Hungary. arieszter@gmail.com","HCEMM-BRC Metabolic Systems Biology Research Group, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary. arieszter@gmail.com","Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Centre, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary. arieszter@gmail.com","Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Centre, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University, P\u00e1zm\u00e1ny P. Stny. 1/C, 1117, Budapest, Hungary. arieszter@gmail.com","institution_ids":["https://openalex.org/I106118109"]},{"raw_affiliation_string":"HCEMM-BRC Metabolic Systems Biology Research Group, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary. arieszter@gmail.com","institution_ids":["https://openalex.org/I2800351701"]},{"raw_affiliation_string":"Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Centre, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary. arieszter@gmail.com","institution_ids":["https://openalex.org/I2800351701"]},{"raw_affiliation_string":"Synthetic and Systems Biology Unit, Institute of Biochemistry, HUN-REN Biological Research Centre, Temesv\u00e1ri Krt. 62, 6726, Szeged, Hungary","institution_ids":["https://openalex.org/I2800351701","https://openalex.org/I4210103004"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5094045011"],"corresponding_institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I4210100714"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.6843,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.70384906,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"25","issue":"1","first_page":"334","last_page":"334"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7421754598617554},{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.6953176259994507},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6390717625617981},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.5405721664428711},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5318118333816528},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4796629250049591},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4708402156829834},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.46344661712646484},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42920413613319397},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3901694715023041},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1645691692829132},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12208104133605957},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10770085453987122}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7421754598617554},{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.6953176259994507},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6390717625617981},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.5405721664428711},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5318118333816528},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4796629250049591},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4708402156829834},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.46344661712646484},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42920413613319397},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3901694715023041},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1645691692829132},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12208104133605957},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10770085453987122},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-024-05948-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05948-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05948-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39425047","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39425047","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11490090","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11490090","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11490090/pdf/12859_2024_Article_5948.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:4173539fd2534cf08947a5381c37bf10","is_oa":true,"landing_page_url":"https://doaj.org/article/4173539fd2534cf08947a5381c37bf10","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 25, Iss 1, Pp 1-13 (2024)","raw_type":"article"},{"id":"pmh:oai:real.mtak.hu:217952","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400081","display_name":"Repository of the Academy's Library (Library of the Hungarian Academy of Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210140733","host_organization_name":"Library and Information Centre of the Hungarian Academy of Sciences","host_organization_lineage":["https://openalex.org/I4210140733"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05948-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05948-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05948-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1289431254","display_name":null,"funder_award_id":"M011216","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G1748000517","display_name":null,"funder_award_id":"NKFIH","funder_id":"https://openalex.org/F4320336675","funder_display_name":"National Research, Development and Innovation Office"},{"id":"https://openalex.org/G2406933141","display_name":null,"funder_award_id":"KKP 129814","funder_id":"https://openalex.org/F4320336675","funder_display_name":"National Research, Development and Innovation Office"},{"id":"https://openalex.org/G2641991998","display_name":null,"funder_award_id":"000PR9817","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G284703623","display_name":null,"funder_award_id":"RRF-2.3.1-21-2022-00006","funder_id":"https://openalex.org/F4320336675","funder_display_name":"National Research, Development and Innovation Office"},{"id":"https://openalex.org/G3104339133","display_name":null,"funder_award_id":"Hungary","funder_id":"https://openalex.org/F4320326762","funder_display_name":"Nemzeti Kutat\u00e1si Fejleszt\u00e9si \u00e9s Innov\u00e1ci\u00f3s Hivatal"},{"id":"https://openalex.org/G3378117337","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G3514550006","display_name":null,"funder_award_id":"Centre","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3601653273","display_name":null,"funder_award_id":"BB/X011054/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3770037565","display_name":null,"funder_award_id":"BBS/E/F/000PR13631","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3804953341","display_name":"Computational Developments","funder_award_id":"BBS/E/T/000PR9817","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G387813240","display_name":null,"funder_award_id":"BB/M0","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4222473055","display_name":null,"funder_award_id":"RRF-2.3.1-21-2022-00006","funder_id":"https://openalex.org/F4320326762","funder_display_name":"Nemzeti Kutat\u00e1si Fejleszt\u00e9si \u00e9s Innov\u00e1ci\u00f3s Hivatal"},{"id":"https://openalex.org/G4333889053","display_name":"The Norwich Research Park Biosciences Doctoral Training Partnership","funder_award_id":"BB/M011216/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5496085106","display_name":"Regulatory interactions and Complex Phenotypes","funder_award_id":"BBS/E/T/000PR9819","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5628916219","display_name":null,"funder_award_id":"RRF-2.3.1-21-2022-00006","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5848580720","display_name":null,"funder_award_id":"KDP-2023","funder_id":"https://openalex.org/F4320326762","funder_display_name":"Nemzeti Kutat\u00e1si Fejleszt\u00e9si \u00e9s Innov\u00e1ci\u00f3s Hivatal"},{"id":"https://openalex.org/G5926167740","display_name":null,"funder_award_id":"BB/CSP1720/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7329839912","display_name":null,"funder_award_id":"739593","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7538635688","display_name":null,"funder_award_id":"2.3.1-21-2022-00006","funder_id":"https://openalex.org/F4320335908","funder_display_name":"Nemzeti Kutat\u00e1si, Fejleszt\u00e9si \u00e9s Innovaci\u00f3s Alap"},{"id":"https://openalex.org/G7631433352","display_name":null,"funder_award_id":"KDP-2023-C2285907","funder_id":"https://openalex.org/F4320335908","funder_display_name":"Nemzeti Kutat\u00e1si, Fejleszt\u00e9si \u00e9s Innovaci\u00f3s Alap"},{"id":"https://openalex.org/G8051717526","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8081419660","display_name":null,"funder_award_id":"RRF-2.3.1-21-2022-00006","funder_id":"https://openalex.org/F4320335908","funder_display_name":"Nemzeti Kutat\u00e1si, Fejleszt\u00e9si \u00e9s Innovaci\u00f3s Alap"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8871692183","display_name":null,"funder_award_id":"Programme","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G95192221","display_name":"Identification of prognostic indicators of healthy ageing with a machine learning based systems biology approach using gut microbiome data","funder_award_id":"BB/S50743X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320326762","display_name":"Nemzeti Kutat\u00e1si Fejleszt\u00e9si \u00e9s Innov\u00e1ci\u00f3s Hivatal","ror":null},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320335908","display_name":"Nemzeti Kutat\u00e1si, Fejleszt\u00e9si \u00e9s Innovaci\u00f3s Alap","ror":null},{"id":"https://openalex.org/F4320336039","display_name":"NIHR Imperial Biomedical Research Centre","ror":"https://ror.org/01kmhx639"},{"id":"https://openalex.org/F4320336675","display_name":"National Research, Development and Innovation Office","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403535708.pdf"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1980548655","https://openalex.org/W1989277387","https://openalex.org/W1993827187","https://openalex.org/W2016106370","https://openalex.org/W2070050178","https://openalex.org/W2084191969","https://openalex.org/W2108819945","https://openalex.org/W2110065044","https://openalex.org/W2122683221","https://openalex.org/W2124992064","https://openalex.org/W2130410032","https://openalex.org/W2137493586","https://openalex.org/W2138255346","https://openalex.org/W2160699408","https://openalex.org/W2162143298","https://openalex.org/W2167893089","https://openalex.org/W2759304130","https://openalex.org/W2782454362","https://openalex.org/W2787894218","https://openalex.org/W2928665623","https://openalex.org/W2944545583","https://openalex.org/W2946173685","https://openalex.org/W2964315448","https://openalex.org/W2981350712","https://openalex.org/W3095583226","https://openalex.org/W3096828292","https://openalex.org/W3102147110","https://openalex.org/W3112600195","https://openalex.org/W3175752499","https://openalex.org/W3205489811","https://openalex.org/W4200043367","https://openalex.org/W4231254854","https://openalex.org/W4280626237","https://openalex.org/W4296024012","https://openalex.org/W4307843054","https://openalex.org/W4375955015","https://openalex.org/W4376131110","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W2982252354","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W3156537409","https://openalex.org/W2140163842","https://openalex.org/W2747931568","https://openalex.org/W2921090651","https://openalex.org/W2133055377","https://openalex.org/W2287365612"],"abstract_inverted_index":{"Traditional":[0],"gene":[1,20,111,127],"set":[2],"enrichment":[3,43,98,215],"analyses":[4],"are":[5],"typically":[6],"limited":[7],"to":[8,61,96,100,160],"a":[9,47,76,195,208,229],"few":[10],"ontologies":[11],"and":[12,41,89,144,202,210,226],"do":[13],"not":[14],"account":[15],"for":[16,57,133,168,213],"the":[17,153,236],"interdependence":[18],"of":[19,79,171,219,231,238],"sets":[21,128],"or":[22,114,174,182],"terms,":[23],"resulting":[24,147],"in":[25,110,118,148],"overcorrected":[26],"p-values.":[27],"To":[28,121],"address":[29],"these":[30,161],"challenges,":[31],"we":[32],"introduce":[33],"mulea,":[34],"an":[35],"R":[36,197],"package":[37,157,198],"offering":[38],"comprehensive":[39],"overrepresentation":[40],"functional":[42,214],"analysis.":[44],"mulea":[45,69,125,191,234],"employs":[46],"progressive":[48,224],"empirical":[49],"false":[50],"discovery":[51],"rate":[52],"(eFDR)":[53],"method,":[54],"specifically":[55],"designed":[56],"interconnected":[58],"biological":[59,240],"data,":[60],"accurately":[62],"identify":[63],"significant":[64],"terms":[65],"within":[66],"diverse":[67,188,239],"ontologies.":[68,163,232],"expands":[70],"beyond":[71],"traditional":[72,220],"tools":[73,221],"by":[74,227],"incorporating":[75],"wide":[77],"range":[78],"ontologies,":[80,173],"encompassing":[81],"Gene":[82],"Ontology,":[83],"pathways,":[84],"regulatory":[85],"elements,":[86],"genomic":[87],"locations,":[88],"protein":[90,116,119],"domains.":[91],"This":[92],"flexibility":[93],"enables":[94],"researchers":[95,207],"tailor":[97],"analysis":[99],"their":[101],"specific":[102],"questions,":[103],"such":[104],"as":[105,194],"identifying":[106],"enriched":[107],"transcriptional":[108],"regulators":[109],"expression":[112],"data":[113],"overrepresented":[115],"domains":[117],"sets.":[120],"facilitate":[122],"seamless":[123],"analysis,":[124,216],"provides":[126],"(in":[129],"standardised":[130],"GMT":[131,175],"format)":[132],"27":[134],"model":[135,244],"organisms,":[136],"covering":[137],"22":[138],"ontology":[139],"types":[140],"from":[141,177,200],"16":[142],"databases":[143],"various":[145,243],"identifiers":[146],"almost":[149],"900":[150],"files.":[151],"Additionally,":[152],"muleaData":[154],"ExperimentData":[155],"Bioconductor":[156],"simplifies":[158],"access":[159],"pre-defined":[162],"Finally,":[164],"mulea's":[165],"architecture":[166],"allows":[167],"easy":[169],"integration":[170],"user-defined":[172],"files":[176],"external":[178],"sources":[179],"(e.g.,":[180],"MSigDB":[181],"Enrichr),":[183],"expanding":[184],"its":[185,223],"applicability":[186],"across":[187,242],"research":[189],"areas.":[190],"is":[192],"distributed":[193],"CRAN":[196],"downloadable":[199],"https://cran.r-project.org/web/packages/mulea/":[201],"https://github.com/ELTEbioinformatics/mulea":[203],".":[204],"It":[205],"offers":[206],"powerful":[209],"flexible":[211],"toolkit":[212],"addressing":[217],"limitations":[218],"with":[222],"eFDR":[225],"supporting":[228],"variety":[230],"Overall,":[233],"fosters":[235],"exploration":[237],"questions":[241],"organisms.":[245]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
