{"id":"https://openalex.org/W4403054871","doi":"https://doi.org/10.1186/s12859-024-05945-w","title":"Ribosomal computing: implementation of the computational method","display_name":"Ribosomal computing: implementation of the computational method","publication_year":2024,"publication_date":"2024-10-02","ids":{"openalex":"https://openalex.org/W4403054871","doi":"https://doi.org/10.1186/s12859-024-05945-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/39358680"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05945-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05945-w","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05945-w.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05945-w.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070084626","display_name":"Pratima Chatterjee","orcid":"https://orcid.org/0000-0002-4997-774X"},"institutions":[{"id":"https://openalex.org/I3131729800","display_name":"Kazi Nazrul University","ror":"https://ror.org/02qy8xv65","country_code":"IN","type":"education","lineage":["https://openalex.org/I3131729800"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Pratima Chatterjee","raw_affiliation_strings":["Kazi Nazrul University, Asansol, West Bengal, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kazi Nazrul University, Asansol, West Bengal, India","institution_ids":["https://openalex.org/I3131729800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057335067","display_name":"Prasun Ghosal","orcid":"https://orcid.org/0000-0003-4226-9043"},"institutions":[{"id":"https://openalex.org/I98365261","display_name":"Indian Institute of Engineering Science and Technology, Shibpur","ror":"https://ror.org/02ytfzr55","country_code":"IN","type":"education","lineage":["https://openalex.org/I98365261"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Prasun Ghosal","raw_affiliation_strings":["IIEST Shibpur, Howrah, West Bengal, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IIEST Shibpur, Howrah, West Bengal, India","institution_ids":["https://openalex.org/I98365261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093586830","display_name":"Sahadeb Shit","orcid":null},"institutions":[{"id":"https://openalex.org/I3131729800","display_name":"Kazi Nazrul University","ror":"https://ror.org/02qy8xv65","country_code":"IN","type":"education","lineage":["https://openalex.org/I3131729800"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sahadeb Shit","raw_affiliation_strings":["Kazi Nazrul University, Asansol, West Bengal, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kazi Nazrul University, Asansol, West Bengal, India","institution_ids":["https://openalex.org/I3131729800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016449762","display_name":"Arindam Biswas","orcid":"https://orcid.org/0000-0002-2576-8919"},"institutions":[{"id":"https://openalex.org/I3131729800","display_name":"Kazi Nazrul University","ror":"https://ror.org/02qy8xv65","country_code":"IN","type":"education","lineage":["https://openalex.org/I3131729800"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Arindam Biswas","raw_affiliation_strings":["Kazi Nazrul University, Asansol, West Bengal, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kazi Nazrul University, Asansol, West Bengal, India","institution_ids":["https://openalex.org/I3131729800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033317672","display_name":"Saurav Mallik","orcid":"https://orcid.org/0000-0003-4107-6784"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saurav Mallik","raw_affiliation_strings":["Department of Environmental Health, Harvard T H Chan School of Public Health, Boston, USA","Department of Pharmacology & Toxicology, University of Arizona, Tucson, AZ, 02115, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Environmental Health, Harvard T H Chan School of Public Health, Boston, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Department of Pharmacology & Toxicology, University of Arizona, Tucson, AZ, 02115, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008246433","display_name":"Sarah Allabun","orcid":"https://orcid.org/0000-0003-4395-1343"},"institutions":[{"id":"https://openalex.org/I106778892","display_name":"Princess Nourah bint Abdulrahman University","ror":"https://ror.org/05b0cyh02","country_code":"SA","type":"education","lineage":["https://openalex.org/I106778892"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Sarah Allabun","raw_affiliation_strings":["Department of Medical Education, College of Medicine, Princess Nourah bint Abdulrahman University, P.O.Box 84428, Riyadh, 11671, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Education, College of Medicine, Princess Nourah bint Abdulrahman University, P.O.Box 84428, Riyadh, 11671, Saudi Arabia","institution_ids":["https://openalex.org/I106778892"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011608930","display_name":"Manal Othman","orcid":"https://orcid.org/0000-0002-5967-1023"},"institutions":[{"id":"https://openalex.org/I106778892","display_name":"Princess Nourah bint Abdulrahman University","ror":"https://ror.org/05b0cyh02","country_code":"SA","type":"education","lineage":["https://openalex.org/I106778892"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Manal Othman","raw_affiliation_strings":["Department of Medical Education, College of Medicine, Princess Nourah bint Abdulrahman University, P.O.Box 84428, Riyadh, 11671, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Education, College of Medicine, Princess Nourah bint Abdulrahman University, P.O.Box 84428, Riyadh, 11671, Saudi Arabia","institution_ids":["https://openalex.org/I106778892"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113413564","display_name":"Almubarak Hassan Ali","orcid":null},"institutions":[{"id":"https://openalex.org/I82952536","display_name":"King Khalid University","ror":"https://ror.org/052kwzs30","country_code":"SA","type":"education","lineage":["https://openalex.org/I82952536"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Almubarak Hassan Ali","raw_affiliation_strings":["Division of Radiology, Department of Medicine, College of Medicine and surgery, King Khalid University (KKU), Abha, Aseer, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Radiology, Department of Medicine, College of Medicine and surgery, King Khalid University (KKU), Abha, Aseer, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I82952536"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091446834","display_name":"E. Elshiekh","orcid":"https://orcid.org/0000-0002-1909-5738"},"institutions":[{"id":"https://openalex.org/I82952536","display_name":"King Khalid University","ror":"https://ror.org/052kwzs30","country_code":"SA","type":"education","lineage":["https://openalex.org/I82952536"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"E. Elshiekh","raw_affiliation_strings":["Department of Radiological Sciences, College of Applied Medical Sciences, King Khalid University, Abha, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiological Sciences, College of Applied Medical Sciences, King Khalid University, Abha, Saudi Arabia","institution_ids":["https://openalex.org/I82952536"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5092893993","display_name":"Ben Othman Soufiene","orcid":"https://orcid.org/0000-0002-3496-1040"},"institutions":[{"id":"https://openalex.org/I8636806","display_name":"University of Sousse","ror":"https://ror.org/00dmpgj58","country_code":"TN","type":"education","lineage":["https://openalex.org/I8636806"]}],"countries":["TN"],"is_corresponding":false,"raw_author_name":"Ben Othman Soufiene","raw_affiliation_strings":["PRINCE Laboratory Research, ISITcom, Hammam Sousse, University of Sousse, Sousse, Tunisia. soufiene.benothman@isim.rnu.tn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"PRINCE Laboratory Research, ISITcom, Hammam Sousse, University of Sousse, Sousse, Tunisia. soufiene.benothman@isim.rnu.tn","institution_ids":["https://openalex.org/I8636806"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5070084626"],"corresponding_institution_ids":["https://openalex.org/I3131729800"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.437,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.64115685,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"25","issue":"1","first_page":"321","last_page":"321"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9789000153541565,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9789000153541565,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.003000000026077032,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.0019000000320374966,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.624401330947876},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4536539614200592},{"id":"https://openalex.org/keywords/ribosomal-rna","display_name":"Ribosomal RNA","score":0.4420810639858246},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.376669704914093},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35648977756500244},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2474578320980072},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.150271475315094}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.624401330947876},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4536539614200592},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.4420810639858246},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.376669704914093},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35648977756500244},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2474578320980072},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.150271475315094},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-024-05945-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05945-w","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05945-w.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39358680","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39358680","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11448306","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11448306","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11448306/pdf/12859_2024_Article_5945.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:643ebdfc288d416ba71a643387fb0d6a","is_oa":false,"landing_page_url":"https://doaj.org/article/643ebdfc288d416ba71a643387fb0d6a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 25, Iss 1, Pp 1-27 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05945-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05945-w","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05945-w.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322484","display_name":"Princess Nourah Bint Abdulrahman University","ror":"https://ror.org/05b0cyh02"},{"id":"https://openalex.org/F4320324433","display_name":"King Khalid University","ror":"https://ror.org/052kwzs30"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403054871.pdf","grobid_xml":"https://content.openalex.org/works/W4403054871.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1493792731","https://openalex.org/W1676917713","https://openalex.org/W1968302884","https://openalex.org/W1970403529","https://openalex.org/W1971944253","https://openalex.org/W1973067702","https://openalex.org/W1998791241","https://openalex.org/W2022754910","https://openalex.org/W2027190461","https://openalex.org/W2039756922","https://openalex.org/W2054579370","https://openalex.org/W2056067932","https://openalex.org/W2075449221","https://openalex.org/W2076278017","https://openalex.org/W2082725317","https://openalex.org/W2085521084","https://openalex.org/W2085736516","https://openalex.org/W2092212918","https://openalex.org/W2093253527","https://openalex.org/W2093471887","https://openalex.org/W2104989924","https://openalex.org/W2110065989","https://openalex.org/W2113934702","https://openalex.org/W2137913279","https://openalex.org/W2140885472","https://openalex.org/W2154128645","https://openalex.org/W2156597892","https://openalex.org/W2160974115","https://openalex.org/W2162778008","https://openalex.org/W2167673850","https://openalex.org/W2413912215","https://openalex.org/W2513175227","https://openalex.org/W2583066415","https://openalex.org/W2769605495","https://openalex.org/W2786571755","https://openalex.org/W2802219035","https://openalex.org/W3047581235","https://openalex.org/W3082644902","https://openalex.org/W4210832403","https://openalex.org/W4234879553","https://openalex.org/W4234887284","https://openalex.org/W4236463097","https://openalex.org/W4238814880"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"BACKGROUND:":[0],"Several":[1],"computational":[2,86,176],"and":[3,21,30,40,98,128,136,142,155,195,217,241],"mathematical":[4,102],"models":[5],"of":[6,17,26,43,67,78,95,113,116,121,130,152,162],"protein":[7,18,34,54,68,96,117,134,141,157,166,196,212,223,238],"synthesis":[8,19,55,97,118,135,158,167,197,239],"have":[9],"been":[10],"explored":[11,48,170],"to":[12,46,49,88,203,236],"accomplish":[13],"the":[14,51,64,72,90,114,126,137,149,190,220],"quantitative":[15],"analysis":[16],"components":[20,56],"polysome":[22],"structure.":[23],"The":[24,160,175,186],"effect":[25,129,161],"gene":[27,38,143,163,193,215],"sequence":[28],"(coding":[29],"non-coding":[31],"region)":[32],"in":[33,37,171,183],"synthesis,":[35],"mutation":[36,164],"sequence,":[39],"functional":[41,65,140],"model":[42,87,124,177,188,200],"ribosome":[44,131,153],"needs":[45],"be":[47],"investigate":[50],"relationship":[52,91,138,191],"among":[53,192],"further.":[57],"Ribosomal":[58],"computing":[59,80,99,150,180],"is":[60,81,168,181],"implemented":[61,182],"by":[62,83],"imitating":[63],"property":[66],"synthesis.":[69,224],"RESULT:":[70],"In":[71],"proposed":[73,187],"work,":[74],"a":[75,85,205,230,237],"general":[76],"framework":[77],"ribosomal":[79,179],"demonstrated":[82],"developing":[84],"present":[89],"between":[92,139],"biological":[93],"details":[94,112],"principles.":[100],"Here,":[101],"abstractions":[103],"are":[104],"chosen":[105],"carefully":[106],"without":[107],"probing":[108],"into":[109],"intricate":[110],"chemical":[111],"micro-operations":[115],"for":[119,178,210,244],"ease":[120],"understanding.":[122],"This":[123,199],"demonstrates":[125,189],"cause":[127],"stalling":[132],"during":[133,222],"sequence.":[144],"Moreover,":[145],"it":[146],"also":[147,169,201],"reveals":[148],"nature":[151],"molecules":[154],"other":[156],"components.":[159,198],"on":[165],"this":[172,184,226],"model.":[173],"CONCLUSION:":[174],"work.":[185],"sequences":[194,216],"helps":[202],"implement":[204],"simulation":[206],"environment":[207],"(a":[208],"simulator)":[209],"generating":[211],"chains":[213],"from":[214],"can":[218,228,233],"spot":[219],"problem":[221,240],"Thus,":[225],"simulator":[227],"identify":[229],"disease":[231],"that":[232],"happen":[234],"due":[235],"suggest":[242],"precautions":[243],"it.":[245]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
