{"id":"https://openalex.org/W4402132297","doi":"https://doi.org/10.1186/s12859-024-05914-3","title":"PCP-GC-LM: single-sequence-based protein contact prediction using dual graph convolutional neural network and convolutional neural network","display_name":"PCP-GC-LM: single-sequence-based protein contact prediction using dual graph convolutional neural network and convolutional neural network","publication_year":2024,"publication_date":"2024-09-02","ids":{"openalex":"https://openalex.org/W4402132297","doi":"https://doi.org/10.1186/s12859-024-05914-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/39223474"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05914-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05914-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05914-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05914-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032801258","display_name":"Jiajun Ouyang","orcid":null},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"J. Ouyang","raw_affiliation_strings":["Key Laboratory of Intelligent Computing Information Processing, Xiangtan University, Xiangtan, China","School of Computer Science, Xiangtan University, Xiangtan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing Information Processing, Xiangtan University, Xiangtan, China","institution_ids":["https://openalex.org/I4610292"]},{"raw_affiliation_string":"School of Computer Science, Xiangtan University, Xiangtan, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115591245","display_name":"Yu Gao","orcid":"https://orcid.org/0000-0002-0286-6794"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Y. Gao","raw_affiliation_strings":["Key Laboratory of Intelligent Computing Information Processing, Xiangtan University, Xiangtan, China. oyjq@xtu.edu.cn","School of Computer Science, Xiangtan University, Xiangtan, China. oyjq@xtu.edu.cn","Key Laboratory of Intelligent Computing Information Processing, Xiangtan University, Xiangtan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing Information Processing, Xiangtan University, Xiangtan, China. oyjq@xtu.edu.cn","institution_ids":["https://openalex.org/I4610292"]},{"raw_affiliation_string":"School of Computer Science, Xiangtan University, Xiangtan, China. oyjq@xtu.edu.cn","institution_ids":["https://openalex.org/I4610292"]},{"raw_affiliation_string":"Key Laboratory of Intelligent Computing Information Processing, Xiangtan University, Xiangtan, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"last","author":{"id":null,"display_name":"Y. Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Y. Yang","raw_affiliation_strings":["School of Computer Science, Xiangtan University, Xiangtan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Xiangtan University, Xiangtan, China","institution_ids":["https://openalex.org/I4610292"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5115591245"],"corresponding_institution_ids":["https://openalex.org/I4610292"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.4013,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.62489077,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"25","issue":"1","first_page":"287","last_page":"287"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9736999869346619,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.8290258646011353},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6432467699050903},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.562021791934967},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4869633615016937},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.45905694365501404},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4408620595932007},{"id":"https://openalex.org/keywords/dual","display_name":"Dual (grammatical number)","score":0.43880021572113037},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33026236295700073},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.14133906364440918},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13374203443527222}],"concepts":[{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.8290258646011353},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6432467699050903},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.562021791934967},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4869633615016937},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.45905694365501404},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4408620595932007},{"id":"https://openalex.org/C2780980858","wikidata":"https://www.wikidata.org/wiki/Q110022","display_name":"Dual (grammatical number)","level":2,"score":0.43880021572113037},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33026236295700073},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.14133906364440918},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13374203443527222},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C124952713","wikidata":"https://www.wikidata.org/wiki/Q8242","display_name":"Literature","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-024-05914-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05914-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05914-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39223474","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39223474","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11370006","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11370006","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11370006/pdf/12859_2024_Article_5914.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:d74f8d889e004f7fa76791ed77886725","is_oa":false,"landing_page_url":"https://doaj.org/article/d74f8d889e004f7fa76791ed77886725","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 25, Iss 1, Pp 1-21 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05914-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05914-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05914-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402132297.pdf","grobid_xml":"https://content.openalex.org/works/W4402132297.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1972126226","https://openalex.org/W2073758233","https://openalex.org/W2112796928","https://openalex.org/W2145268834","https://openalex.org/W2194775991","https://openalex.org/W2605650084","https://openalex.org/W2618530766","https://openalex.org/W2807152622","https://openalex.org/W2913820882","https://openalex.org/W2928165649","https://openalex.org/W2949867299","https://openalex.org/W2950334474","https://openalex.org/W2966057938","https://openalex.org/W3003647270","https://openalex.org/W3015959833","https://openalex.org/W3017657949","https://openalex.org/W3021338900","https://openalex.org/W3032123378","https://openalex.org/W3111174583","https://openalex.org/W3136751755","https://openalex.org/W3160452636","https://openalex.org/W3162614523","https://openalex.org/W3188776488","https://openalex.org/W3197696221","https://openalex.org/W3208895006","https://openalex.org/W4200227922","https://openalex.org/W4200308080","https://openalex.org/W4205177317","https://openalex.org/W4210535996","https://openalex.org/W4220952154"],"related_works":["https://openalex.org/W4293226380","https://openalex.org/W4321487865","https://openalex.org/W4313906399","https://openalex.org/W4391266461","https://openalex.org/W2590798552","https://openalex.org/W2811106690","https://openalex.org/W4239306820","https://openalex.org/W2947043951","https://openalex.org/W4312417841","https://openalex.org/W4210874298"],"abstract_inverted_index":{"BACKGROUND:":[0],"Recently,":[1],"the":[2,8,14,29,32,47,62,68,78,82,91,96,101,106,110,124,139,159,162,233,271],"process":[3,174],"of":[4,16,28,34,49,80,93,108,123,130,141,144,165,178,235,273,303],"evolution":[5,39],"information":[6,40,155,166],"and":[7,36,60,117,127,153,181,214,259,293],"deep":[9],"learning":[10],"network":[11,64,99,116],"has":[12,100,134],"promoted":[13],"improvement":[15],"protein":[17,57,94,147,151,175,204,240,253,292,304],"contact":[18,205,289],"prediction":[19,33,73],"methods.":[20],"Nevertheless,":[21],"still":[22,77],"remain":[23],"some":[24],"bottleneck:":[25],"(1)":[26],"One":[27],"bottlenecks":[30],"is":[31,46,76],"orphans":[35],"other":[37,44,87,222,248,301],"fewer":[38],"proteins.":[41],"(2)":[42],"The":[43],"bottleneck":[45],"method":[48,218,237],"predicting":[50],"single-sequence-based":[51,203,223],"proteins":[52,190],"mainly":[53],"focuses":[54],"on":[55],"selecting":[56],"sequence":[58,152],"features":[59,140],"tuning":[61],"neural":[63,70,88,98,115,132,185,212],"architecture,":[65],"However,":[66],"while":[67,183],"deeper":[69],"networks":[71,89,133,186,213],"improve":[72],"accuracy,":[74],"there":[75],"problem":[79],"increasing":[81],"computational":[83],"burden.":[84],"Compared":[85],"with":[86,209,221,247],"in":[90,137,146,225,250,291,300],"field":[92],"prediction,":[95],"graph":[97,114,131,211,276],"following":[102],"advantages:":[103],"due":[104],"to":[105,120,188,231,269,285,297],"advantage":[107,122],"revealing":[109],"topology":[111],"structure":[112,126,154],"via":[113],"being":[118],"able":[119],"take":[121],"hierarchical":[125],"local":[128],"connectivity":[129],"certain":[135],"advantages":[136],"capturing":[138],"different":[142,179,226],"levels":[143],"abstraction":[145],"molecules.":[148],"When":[149],"using":[150],"for":[156,196],"joint":[157],"training,":[158],"dependencies":[160],"between":[161],"two":[163,251],"kinds":[164],"can":[167,173],"be":[168],"better":[169,220],"captured.":[170],"And":[171],"it":[172,246],"molecular":[176],"structures":[177],"lengths":[180],"shapes,":[182],"traditional":[184],"need":[187],"convert":[189],"into":[191],"fixed-size":[192],"vectors":[193],"or":[194],"matrices":[195],"processing.":[197],"RESULTS:":[198],"Here,":[199],"we":[200,242,264],"propose":[201],"a":[202,274],"map":[206],"predictor":[207],"PCP-GC-LM,":[208],"dual-level":[210],"convolution":[215],"networks.":[216],"Our":[217],"performs":[219],"predictors":[224],"independent":[227],"tests.":[228],"In":[229,278],"addition,":[230],"verify":[232],"validity":[234],"our":[236,280],"against":[238],"complex":[239],"structures,":[241],"will":[243],"also":[244,265,295],"compare":[245],"methods":[249],"homodimers":[252],"test":[254,257],"sets":[255],"(DeepHomo":[256],"dataset":[258],"CASP-CAPRI":[260],"target":[261],"dataset).":[262],"Furthermore,":[263],"perform":[266],"ablation":[267],"experiments":[268],"demonstrate":[270],"necessity":[272],"dual":[275],"network.":[277],"all,":[279],"framework":[281],"presents":[282],"new":[283],"modules":[284],"accurately":[286],"predict":[287],"inter-chain":[288],"maps":[290],"it's":[294],"useful":[296],"analyze":[298],"interactions":[299],"types":[302],"complexes.":[305]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}