{"id":"https://openalex.org/W4402408413","doi":"https://doi.org/10.1186/s12859-024-05907-2","title":"HiCMC: High-Efficiency Contact Matrix Compressor","display_name":"HiCMC: High-Efficiency Contact Matrix Compressor","publication_year":2024,"publication_date":"2024-09-10","ids":{"openalex":"https://openalex.org/W4402408413","doi":"https://doi.org/10.1186/s12859-024-05907-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/39256681"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05907-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05907-2","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05907-2.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05907-2.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091643585","display_name":"Yeremia Gunawan Adhisantoso","orcid":"https://orcid.org/0000-0001-8132-5007"},"institutions":[{"id":"https://openalex.org/I114112103","display_name":"Leibniz University Hannover","ror":"https://ror.org/0304hq317","country_code":"DE","type":"education","lineage":["https://openalex.org/I114112103"]},{"id":"https://openalex.org/I4210088543","display_name":"Institut f\u00fcr Informationsverarbeitung","ror":"https://ror.org/0047j9t38","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210088543"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Yeremia Gunawan Adhisantoso","raw_affiliation_strings":["Institut f\u00fcr Informationsverarbeitung and L3S Research Center, Leibniz University Hannover, Hannover, Germany. adhisant@tnt.uni-hannover.de"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Informationsverarbeitung and L3S Research Center, Leibniz University Hannover, Hannover, Germany. adhisant@tnt.uni-hannover.de","institution_ids":["https://openalex.org/I4210088543","https://openalex.org/I114112103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111321825","display_name":"Tim K\u00f6rner","orcid":null},"institutions":[{"id":"https://openalex.org/I114112103","display_name":"Leibniz University Hannover","ror":"https://ror.org/0304hq317","country_code":"DE","type":"education","lineage":["https://openalex.org/I114112103"]},{"id":"https://openalex.org/I4210088543","display_name":"Institut f\u00fcr Informationsverarbeitung","ror":"https://ror.org/0047j9t38","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210088543"]},{"id":"https://openalex.org/I4210136150","display_name":"L3S Research Center","ror":"https://ror.org/039t4wk02","country_code":"DE","type":"facility","lineage":["https://openalex.org/I114112103","https://openalex.org/I4210136150","https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tim K\u00f6rner","raw_affiliation_strings":["Institut f\u00fcr Informationsverarbeitung and L3S Research Center, Leibniz University Hannover, Hannover, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Informationsverarbeitung and L3S Research Center, Leibniz University Hannover, Hannover, Germany","institution_ids":["https://openalex.org/I4210088543","https://openalex.org/I4210136150","https://openalex.org/I114112103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043581604","display_name":"Fabian M\u00fcntefering","orcid":"https://orcid.org/0000-0002-4174-9662"},"institutions":[{"id":"https://openalex.org/I114112103","display_name":"Leibniz University Hannover","ror":"https://ror.org/0304hq317","country_code":"DE","type":"education","lineage":["https://openalex.org/I114112103"]},{"id":"https://openalex.org/I4210088543","display_name":"Institut f\u00fcr Informationsverarbeitung","ror":"https://ror.org/0047j9t38","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210088543"]},{"id":"https://openalex.org/I4210136150","display_name":"L3S Research Center","ror":"https://ror.org/039t4wk02","country_code":"DE","type":"facility","lineage":["https://openalex.org/I114112103","https://openalex.org/I4210136150","https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fabian M\u00fcntefering","raw_affiliation_strings":["Institut f\u00fcr Informationsverarbeitung and L3S Research Center, Leibniz University Hannover, Hannover, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Informationsverarbeitung and L3S Research Center, Leibniz University Hannover, Hannover, Germany","institution_ids":["https://openalex.org/I4210088543","https://openalex.org/I4210136150","https://openalex.org/I114112103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064913233","display_name":"J\u00f6rn \u00d6stermann","orcid":"https://orcid.org/0000-0002-6743-3324"},"institutions":[{"id":"https://openalex.org/I114112103","display_name":"Leibniz University Hannover","ror":"https://ror.org/0304hq317","country_code":"DE","type":"education","lineage":["https://openalex.org/I114112103"]},{"id":"https://openalex.org/I4210088543","display_name":"Institut f\u00fcr Informationsverarbeitung","ror":"https://ror.org/0047j9t38","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210088543"]},{"id":"https://openalex.org/I4210136150","display_name":"L3S Research Center","ror":"https://ror.org/039t4wk02","country_code":"DE","type":"facility","lineage":["https://openalex.org/I114112103","https://openalex.org/I4210136150","https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J\u00f6rn Ostermann","raw_affiliation_strings":["Institut f\u00fcr Informationsverarbeitung and L3S Research Center, Leibniz University Hannover, Hannover, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Informationsverarbeitung and L3S Research Center, Leibniz University Hannover, Hannover, Germany","institution_ids":["https://openalex.org/I4210088543","https://openalex.org/I4210136150","https://openalex.org/I114112103"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036024697","display_name":"Jan Voges","orcid":"https://orcid.org/0000-0002-6080-660X"},"institutions":[{"id":"https://openalex.org/I4210112085","display_name":"Navarre Institute of Health Research","ror":"https://ror.org/023d5h353","country_code":"ES","type":"education","lineage":["https://openalex.org/I4210112085"]},{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jan Voges","raw_affiliation_strings":["CIMA University of Navarra, Pamplona, Spain","IdiSNA, Pamplona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIMA University of Navarra, Pamplona, Spain","institution_ids":["https://openalex.org/I88155538"]},{"raw_affiliation_string":"IdiSNA, Pamplona, Spain","institution_ids":["https://openalex.org/I4210112085"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5091643585"],"corresponding_institution_ids":["https://openalex.org/I114112103","https://openalex.org/I4210088543"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12895942,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"25","issue":"1","first_page":"296","last_page":"296"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.37400001287460327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.37400001287460327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.061799999326467514,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.05979999899864197,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6358473300933838},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.5924879312515259},{"id":"https://openalex.org/keywords/matrix","display_name":"Matrix (chemical analysis)","score":0.5410782694816589},{"id":"https://openalex.org/keywords/compression","display_name":"Compression (physics)","score":0.4464433491230011},{"id":"https://openalex.org/keywords/gas-compressor","display_name":"Gas compressor","score":0.43625587224960327},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3790937066078186},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.347439169883728},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22571447491645813},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17333507537841797},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.15926134586334229},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.13624534010887146},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1329728364944458},{"id":"https://openalex.org/keywords/mechanical-engineering","display_name":"Mechanical engineering","score":0.08946084976196289}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6358473300933838},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.5924879312515259},{"id":"https://openalex.org/C106487976","wikidata":"https://www.wikidata.org/wiki/Q685816","display_name":"Matrix (chemical analysis)","level":2,"score":0.5410782694816589},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.4464433491230011},{"id":"https://openalex.org/C131097465","wikidata":"https://www.wikidata.org/wiki/Q178898","display_name":"Gas compressor","level":2,"score":0.43625587224960327},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3790937066078186},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.347439169883728},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22571447491645813},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17333507537841797},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.15926134586334229},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.13624534010887146},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1329728364944458},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.08946084976196289},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-024-05907-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05907-2","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05907-2.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39256681","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39256681","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11389233","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11389233","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11389233/pdf/12859_2024_Article_5907.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:b20881c1c94c4b09a32b7406e4c0ff5f","is_oa":false,"landing_page_url":"https://doaj.org/article/b20881c1c94c4b09a32b7406e4c0ff5f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 25, Iss 1, Pp 1-15 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05907-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05907-2","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05907-2.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3959959924","display_name":"P4D - Personalisierte, pr\u00e4diktive, pr\u00e4zise und pr\u00e4ventive Medizin zur Verbesserung der Fr\u00fcherkennung, Diagnostik, Therapie und Pr\u00e4vention depressiver Erkrankungen - Assoziationsstudien sowie Datenplattform f\u00fcr elektronische Gesundheitsakten und Omics-Daten","funder_award_id":"01EK2204F","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320322379","display_name":"Gottfried Wilhelm Leibniz Universit\u00e4t Hannover","ror":"https://ror.org/0304hq317"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402408413.pdf","grobid_xml":"https://content.openalex.org/works/W4402408413.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1523411787","https://openalex.org/W1660678623","https://openalex.org/W1743861851","https://openalex.org/W1777016212","https://openalex.org/W1922881706","https://openalex.org/W1973062929","https://openalex.org/W1981276685","https://openalex.org/W1997338841","https://openalex.org/W1998137132","https://openalex.org/W2069769149","https://openalex.org/W2073026107","https://openalex.org/W2083278169","https://openalex.org/W2090037139","https://openalex.org/W2102368172","https://openalex.org/W2104846587","https://openalex.org/W2108234281","https://openalex.org/W2111123813","https://openalex.org/W2117608012","https://openalex.org/W2118503070","https://openalex.org/W2142265837","https://openalex.org/W2159479483","https://openalex.org/W2493763501","https://openalex.org/W2557097554","https://openalex.org/W2582946425","https://openalex.org/W2584394140","https://openalex.org/W2765756720","https://openalex.org/W2798012365","https://openalex.org/W2949676527","https://openalex.org/W2951856336","https://openalex.org/W2960979937","https://openalex.org/W3017323102","https://openalex.org/W3087339707","https://openalex.org/W3172344398","https://openalex.org/W3195254751","https://openalex.org/W4205986177","https://openalex.org/W4283809215","https://openalex.org/W4308022950","https://openalex.org/W6828962794"],"related_works":["https://openalex.org/W2180065763","https://openalex.org/W2097960496","https://openalex.org/W4234675215","https://openalex.org/W2115762596","https://openalex.org/W2065319031","https://openalex.org/W4246029114","https://openalex.org/W971438466","https://openalex.org/W2064188213","https://openalex.org/W1618723217","https://openalex.org/W2147516520"],"abstract_inverted_index":{"BACKGROUND:":[0],"Chromosome":[1],"organization":[2,56],"plays":[3],"an":[4],"important":[5],"role":[6],"in":[7,64,100,187],"biological":[8,27],"processes":[9],"such":[10,104,176],"as":[11,105,177],"replication,":[12],"regulation,":[13],"and":[14,25,107,118,125,134,151,179],"transcription.":[15],"One":[16],"way":[17],"to":[18,72,157,189],"study":[19],"the":[20,52,68,81,96,101,111,119,145,190],"relationship":[21],"between":[22],"chromosome":[23,38,55],"structure":[24],"its":[26],"functions":[28],"is":[29,49,57,164,194],"through":[30],"Hi-C":[31,91],"studies,":[32],"a":[33,77,165,184],"genome-wide":[34],"method":[35,113],"for":[36,87,183],"capturing":[37],"conformation.":[39],"Such":[40],"studies":[41],"generate":[42],"vast":[43],"amounts":[44],"of":[45,70,90,173],"data.":[46,92],"The":[47],"problem":[48],"exacerbated":[50],"by":[51,115,127],"fact":[53],"that":[54,148,169],"dynamic,":[58],"requiring":[59],"snapshots":[60],"at":[61,196],"different":[62],"points":[63],"time,":[65],"further":[66],"increasing":[67],"amount":[69],"data":[71],"be":[73,155],"stored.":[74],"We":[75],"present":[76],"novel":[78,166],"approach":[79,168],"called":[80],"High-Efficiency":[82],"Contact":[83],"Matrix":[84],"Compressor":[85],"(HiCMC)":[86],"efficient":[88],"compression":[89,167,186],"RESULTS:":[93],"By":[94],"modeling":[95],"underlying":[97],"structures":[98],"found":[99],"contact":[102,135,174],"matrix,":[103,175],"compartments":[106,178],"domains,":[108],"HiCMC":[109,140,163,193],"outperforms":[110],"state-of-the-art":[112,121,191],"CMC":[114],"approximately":[116],"8%":[117],"other":[120],"methods":[122],"cooler,":[123],"LZMA,":[124],"bzip2":[126],"over":[128],"50%":[129],"across":[130],"multiple":[131],"cell":[132],"lines":[133],"matrix":[136],"resolutions.":[137],"In":[138],"addition,":[139],"integrates":[141],"domain-specific":[142],"information":[143,153],"into":[144],"compressed":[146],"bitstreams":[147],"it":[149],"generates,":[150],"this":[152],"can":[154],"used":[156],"speed":[158],"up":[159],"downstream":[160],"analyses.":[161],"CONCLUSION:":[162],"utilizes":[170],"intrinsic":[171],"properties":[172],"domains.":[180],"It":[181],"allows":[182],"better":[185],"comparison":[188],"methods.":[192],"available":[195],"https://github.com/sXperfect/hicmc":[197],".":[198]},"counts_by_year":[],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
