{"id":"https://openalex.org/W4402529118","doi":"https://doi.org/10.1186/s12859-024-05897-1","title":"A novel approach to the analysis of Overall Survival (OS) as response with Progression-Free Interval (PFI) as condition based on the RNA-seq expression data in The Cancer Genome Atlas (TCGA)","display_name":"A novel approach to the analysis of Overall Survival (OS) as response with Progression-Free Interval (PFI) as condition based on the RNA-seq expression data in The Cancer Genome Atlas (TCGA)","publication_year":2024,"publication_date":"2024-09-13","ids":{"openalex":"https://openalex.org/W4402529118","doi":"https://doi.org/10.1186/s12859-024-05897-1","pmid":"https://pubmed.ncbi.nlm.nih.gov/39271985"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05897-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05897-1","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05897-1.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05897-1.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102945417","display_name":"Bo Lin","orcid":"https://orcid.org/0000-0001-6566-0120"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Lin","raw_affiliation_strings":["School of Mathematical Sciences, University of Science and Technology of China, Hefei, 230026, Anhui, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematical Sciences, University of Science and Technology of China, Hefei, 230026, Anhui, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087911229","display_name":"Kaipeng Wang","orcid":"https://orcid.org/0000-0002-2206-4318"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kaipeng Wang","raw_affiliation_strings":["School of Mathematics and Statistics, Nanjing University of Science and Technology, Nanjing, 210094, Jiangsu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, Nanjing University of Science and Technology, Nanjing, 210094, Jiangsu, China","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108063844","display_name":"Yuan Yuan","orcid":"https://orcid.org/0000-0002-4011-1042"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I169351748","display_name":"Bengbu Medical College","ror":"https://ror.org/01f8qvj05","country_code":"CN","type":"education","lineage":["https://openalex.org/I169351748"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuan Yuan","raw_affiliation_strings":["Department of Emergency Medicine, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China","Graduate School of Bengbu Medical College, Bengbu, Anhui, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Emergency Medicine, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Graduate School of Bengbu Medical College, Bengbu, Anhui, China","institution_ids":["https://openalex.org/I169351748"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103124250","display_name":"Yueguo Wang","orcid":"https://orcid.org/0000-0003-1463-0786"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yueguo Wang","raw_affiliation_strings":["Department of Emergency Medicine, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Emergency Medicine, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100691421","display_name":"Qingyuan Liu","orcid":"https://orcid.org/0000-0002-9711-3583"},"institutions":[{"id":"https://openalex.org/I118987531","display_name":"Anhui Jianzhu University","ror":"https://ror.org/0108wjw08","country_code":"CN","type":"education","lineage":["https://openalex.org/I118987531"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qingyuan Liu","raw_affiliation_strings":["School of Mathematics and Physics, Anhui Jianzhu University, Hefei, 230009, Anhui, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics and Physics, Anhui Jianzhu University, Hefei, 230009, Anhui, China","institution_ids":["https://openalex.org/I118987531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100661959","display_name":"Yulan Wang","orcid":"https://orcid.org/0000-0002-2831-8737"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yulan Wang","raw_affiliation_strings":["Department of Emergency Medicine, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Emergency Medicine, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101926933","display_name":"Jian Sun","orcid":"https://orcid.org/0000-0003-4858-7448"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Sun","raw_affiliation_strings":["Department of Emergency Medicine, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Emergency Medicine, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100409138","display_name":"Wenwen Wang","orcid":"https://orcid.org/0000-0002-1545-4369"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenwen Wang","raw_affiliation_strings":["Department of Emergency Medicine, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Emergency Medicine, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Huanli Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huanli Wang","raw_affiliation_strings":["Department of Information Center, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Center, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039272835","display_name":"Shusheng Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shusheng Zhou","raw_affiliation_strings":["Department of Emergency Medicine, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Emergency Medicine, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028030338","display_name":"Kui Jin","orcid":"https://orcid.org/0000-0002-2272-9949"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kui Jin","raw_affiliation_strings":["Department of Emergency Medicine, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Emergency Medicine, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, Anhui, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019858170","display_name":"Mengping Zhang","orcid":"https://orcid.org/0000-0001-5714-6148"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengping Zhang","raw_affiliation_strings":["School of Mathematical Sciences, University of Science and Technology of China, Hefei, 230026, Anhui, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematical Sciences, University of Science and Technology of China, Hefei, 230026, Anhui, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101778812","display_name":"Yinglei Lai","orcid":"https://orcid.org/0000-0002-6962-6373"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I193531525","display_name":"George Washington University","ror":"https://ror.org/00y4zzh67","country_code":"US","type":"education","lineage":["https://openalex.org/I193531525"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Yinglei Lai","raw_affiliation_strings":["Department of Statistics, The George Washington University, Washington, DC, USA. Laiyinglei@ustc.edu.cn","School of Mathematical Sciences, University of Science and Technology of China, Hefei, 230026, Anhui, China. Laiyinglei@ustc.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, The George Washington University, Washington, DC, USA. Laiyinglei@ustc.edu.cn","institution_ids":["https://openalex.org/I193531525"]},{"raw_affiliation_string":"School of Mathematical Sciences, University of Science and Technology of China, Hefei, 230026, Anhui, China. Laiyinglei@ustc.edu.cn","institution_ids":["https://openalex.org/I126520041"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101778812"],"corresponding_institution_ids":["https://openalex.org/I126520041","https://openalex.org/I193531525"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.3614,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.89336667,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"25","issue":"1","first_page":"300","last_page":"300"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.6184999942779541,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.6184999942779541,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.1120000034570694,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.03240000084042549,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.5844522714614868},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4851003885269165},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.4777925908565521},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.474199116230011},{"id":"https://openalex.org/keywords/survival-analysis","display_name":"Survival analysis","score":0.4655879735946655},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4626207649707794},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.4361015558242798},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.415637344121933},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.4036896824836731},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.38434037566185},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.37505489587783813},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.3197215795516968},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3114428222179413},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25161200761795044},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24386712908744812}],"concepts":[{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.5844522714614868},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4851003885269165},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.4777925908565521},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.474199116230011},{"id":"https://openalex.org/C10515644","wikidata":"https://www.wikidata.org/wiki/Q543310","display_name":"Survival analysis","level":2,"score":0.4655879735946655},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4626207649707794},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.4361015558242798},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.415637344121933},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4036896824836731},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.38434037566185},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.37505489587783813},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.3197215795516968},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3114428222179413},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25161200761795044},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24386712908744812}],"mesh":[{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-024-05897-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05897-1","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05897-1.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39271985","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39271985","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11395968","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11395968","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11395968/pdf/12859_2024_Article_5897.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:981393676ece455eb741312576b7b943","is_oa":true,"landing_page_url":"https://doaj.org/article/981393676ece455eb741312576b7b943","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 25, Iss 1, Pp 1-21 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05897-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05897-1","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05897-1.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2348142770","display_name":null,"funder_award_id":"12126604","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5362755632","display_name":null,"funder_award_id":"2020b07050001","funder_id":"https://openalex.org/F4320336601","funder_display_name":"Major Science and Technology Projects in Anhui Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320325599","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09"},{"id":"https://openalex.org/F4320336601","display_name":"Major Science and Technology Projects in Anhui Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402529118.pdf"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1484801239","https://openalex.org/W1975161647","https://openalex.org/W1983612441","https://openalex.org/W2005580806","https://openalex.org/W2013689038","https://openalex.org/W2030142098","https://openalex.org/W2038405618","https://openalex.org/W2070449502","https://openalex.org/W2078159349","https://openalex.org/W2080227261","https://openalex.org/W2093652853","https://openalex.org/W2096864872","https://openalex.org/W2103018859","https://openalex.org/W2109242212","https://openalex.org/W2114586150","https://openalex.org/W2117569233","https://openalex.org/W2123106337","https://openalex.org/W2123664981","https://openalex.org/W2129228910","https://openalex.org/W2129991620","https://openalex.org/W2130410032","https://openalex.org/W2143396070","https://openalex.org/W2167422856","https://openalex.org/W2272640380","https://openalex.org/W2337332154","https://openalex.org/W2496999749","https://openalex.org/W2618622352","https://openalex.org/W2749606330","https://openalex.org/W2753123306","https://openalex.org/W2795989238","https://openalex.org/W2898841793","https://openalex.org/W2912489286","https://openalex.org/W2916254412","https://openalex.org/W2919268469","https://openalex.org/W2957990707","https://openalex.org/W2972179913","https://openalex.org/W2996872173","https://openalex.org/W3014638561","https://openalex.org/W3089368515","https://openalex.org/W3147894994","https://openalex.org/W3213116647","https://openalex.org/W4207038785","https://openalex.org/W4210727717","https://openalex.org/W4225398025","https://openalex.org/W4233494161","https://openalex.org/W4293241248","https://openalex.org/W4302446797","https://openalex.org/W4384820114","https://openalex.org/W4389522977","https://openalex.org/W4390941074"],"related_works":["https://openalex.org/W4394359997","https://openalex.org/W4362511652","https://openalex.org/W4362511917","https://openalex.org/W4362511922","https://openalex.org/W4362485688","https://openalex.org/W4362530184","https://openalex.org/W4362530193","https://openalex.org/W2904597490","https://openalex.org/W4362485661","https://openalex.org/W4394365953"],"abstract_inverted_index":{"BACKGROUND:":[0],"Overall":[1],"Survival":[2],"(OS)":[3],"and":[4,32,57,117,125,159,285],"Progression-Free":[5],"Interval":[6],"(PFI)":[7],"as":[8,44,83,95,129,131],"survival":[9,33,49,275],"times":[10],"have":[11],"been":[12],"collected":[13],"in":[14,29],"The":[15,144],"Cancer":[16],"Genome":[17],"Atlas":[18],"(TCGA).":[19],"It":[20],"is":[21,268,281],"of":[22,65,72,90,102,152,174,188,213,226,246,260,277],"biomedical":[23],"interest":[24],"to":[25,37,182,220,254,270],"consider":[26],"their":[27],"dependence":[28],"pathway":[30,232],"detection":[31],"prediction.":[34],"We":[35,85,98],"intend":[36],"develop":[38],"novel":[39],"methods":[40,92],"for":[41,51,75,112,149],"integrating":[42],"PFI":[43,94,175,214,247,272,280],"condition":[45],"based":[46],"on":[47,62,139,264],"parametric":[48],"models":[50],"identifying":[52],"pathways":[53,162,193],"associated":[54],"with":[55,78,93,171,210,243],"OS":[56],"predicting":[58],"OS.":[59,278],"RESULTS:":[60],"Based":[61,263],"the":[63,100,150,172,183,186,211,221,224,244,255,258,274],"framework":[64],"conditional":[66],"probability,":[67],"we":[68],"developed":[69],"a":[70,96,282],"family":[71],"frailty-based":[73],"parametric-models":[74],"this":[76],"purpose,":[77],"exponential":[79],"or":[80],"Weibull":[81],"distribution":[82],"baseline.":[84],"also":[86],"considered":[87],"two":[88],"classes":[89],"existing":[91],"covariate.":[97],"evaluated":[99],"performance":[101,180,218,252],"three":[103,169,208,241],"approaches":[104,170,184,209,222,242,256],"by":[105,165,204,236,291],"analyzing":[106],"RNA-seq":[107],"expression":[108],"data":[109],"from":[110],"TCGA":[111],"lung":[113,118],"squamous":[114],"cell":[115,160],"carcinoma":[116],"adenocarcinoma":[119],"(LUNG),":[120],"brain":[121],"lower":[122],"grade":[123],"glioma":[124],"glioblastoma":[126],"multiforme":[127],"(GBMLGG),":[128],"well":[130],"skin":[132],"cutaneous":[133],"melanoma":[134],"(SKCM).":[135],"Our":[136],"focus":[137],"was":[138,147,233],"fourteen":[140],"general":[141],"cancer-related":[142],"pathways.":[143],"10-fold":[145],"cross-validation":[146],"employed":[148],"evaluation":[151],"predictive":[153,179,217,251],"accuracy.":[154],"For":[155,190,228],"LUNG,":[156],"p53":[157,230],"signaling":[158,231],"cycle":[161],"were":[163,202],"detected":[164,203,234],"all":[166,205],"approaches.":[167,206],"Furthermore,":[168,207,279],"consideration":[173,187,212,225,245,259],"demonstrated":[176,215,248],"significantly":[177,249],"better":[178,216,250],"compared":[181,219,253],"without":[185,223,257],"PFI.":[189,227,261],"GBMLGG,":[191],"ten":[192],"(e.g.,":[194],"Wnt":[195],"signaling,":[196,198],"JAK-STAT":[197],"ECM-receptor":[199],"interaction,":[200],"etc.)":[201],"SKCM,":[229],"only":[235],"our":[237,265,292],"Weibull-baseline-based":[238],"model.":[239],"And":[240],"CONCLUSIONS:":[262],"study,":[266],"it":[267],"necessary":[269],"incorporate":[271],"into":[273],"analysis":[276],"survival-type":[283],"time,":[284],"improved":[286],"results":[287],"can":[288],"be":[289],"achieved":[290],"conditional-probability-based":[293],"approach.":[294]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6}],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
