{"id":"https://openalex.org/W4400557340","doi":"https://doi.org/10.1186/s12859-024-05845-z","title":"A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques","display_name":"A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques","publication_year":2024,"publication_date":"2024-07-11","ids":{"openalex":"https://openalex.org/W4400557340","doi":"https://doi.org/10.1186/s12859-024-05845-z","pmid":"https://pubmed.ncbi.nlm.nih.gov/38992584"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05845-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05845-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05845-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05845-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042374222","display_name":"Louison Fresnais","orcid":"https://orcid.org/0000-0003-2970-1495"},"institutions":[{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555"]},{"id":"https://openalex.org/I14285755","display_name":"L'Or\u00e9al (France)","ror":"https://ror.org/00nb3j622","country_code":"FR","type":"company","lineage":["https://openalex.org/I14285755"]},{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210100066","display_name":"Toxalim Research Centre in Food Toxicology","ror":"https://ror.org/0111a5077","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210100066","https://openalex.org/I4210121065"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Louison Fresnais","raw_affiliation_strings":["L'Or\u00e9al Research and Innovation, Aulnay-sous-Bois, France. louison.fresnais@loreal.com","UMR1331 Toxalim (Research Centre in Food Toxicology), Universit\u00e9 de Toulouse, INRAE, ENVT, INP-Purpan, UPS, Toulouse, France. louison.fresnais@loreal.com","L\u2019Or\u00e9al Recherche & Innovation (1 av. Eug\u00e8ne Schueller, 93600 Aulnay-sous-Bois - France)","ToxAlim - ToxAlim (23 ch. Capelles 31076 TOULOUSE - France)"],"affiliations":[{"raw_affiliation_string":"L'Or\u00e9al Research and Innovation, Aulnay-sous-Bois, France. louison.fresnais@loreal.com","institution_ids":["https://openalex.org/I14285755"]},{"raw_affiliation_string":"UMR1331 Toxalim (Research Centre in Food Toxicology), Universit\u00e9 de Toulouse, INRAE, ENVT, INP-Purpan, UPS, Toulouse, France. louison.fresnais@loreal.com","institution_ids":["https://openalex.org/I134560555","https://openalex.org/I4210100066","https://openalex.org/I176063091","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"L\u2019Or\u00e9al Recherche & Innovation (1 av. Eug\u00e8ne Schueller, 93600 Aulnay-sous-Bois - France)","institution_ids":["https://openalex.org/I14285755"]},{"raw_affiliation_string":"ToxAlim - ToxAlim (23 ch. Capelles 31076 TOULOUSE - France)","institution_ids":["https://openalex.org/I4210100066"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063027027","display_name":"Olivier P\u00e9rin","orcid":"https://orcid.org/0000-0002-2590-7974"},"institutions":[{"id":"https://openalex.org/I14285755","display_name":"L'Or\u00e9al (France)","ror":"https://ror.org/00nb3j622","country_code":"FR","type":"company","lineage":["https://openalex.org/I14285755"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Perin","raw_affiliation_strings":["L'Or\u00e9al Research and Innovation, Aulnay-sous-Bois, France","L\u2019Or\u00e9al Recherche & Innovation (1 av. Eug\u00e8ne Schueller, 93600 Aulnay-sous-Bois - France)"],"affiliations":[{"raw_affiliation_string":"L'Or\u00e9al Research and Innovation, Aulnay-sous-Bois, France","institution_ids":["https://openalex.org/I14285755"]},{"raw_affiliation_string":"L\u2019Or\u00e9al Recherche & Innovation (1 av. Eug\u00e8ne Schueller, 93600 Aulnay-sous-Bois - France)","institution_ids":["https://openalex.org/I14285755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109945509","display_name":"Anne Riu","orcid":null},"institutions":[{"id":"https://openalex.org/I14285755","display_name":"L'Or\u00e9al (France)","ror":"https://ror.org/00nb3j622","country_code":"FR","type":"company","lineage":["https://openalex.org/I14285755"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anne Riu","raw_affiliation_strings":["L'Or\u00e9al Research and Innovation, Aulnay-sous-Bois, France","L\u2019Or\u00e9al Recherche & Innovation (1 av. Eug\u00e8ne Schueller, 93600 Aulnay-sous-Bois - France)"],"affiliations":[{"raw_affiliation_string":"L'Or\u00e9al Research and Innovation, Aulnay-sous-Bois, France","institution_ids":["https://openalex.org/I14285755"]},{"raw_affiliation_string":"L\u2019Or\u00e9al Recherche & Innovation (1 av. Eug\u00e8ne Schueller, 93600 Aulnay-sous-Bois - France)","institution_ids":["https://openalex.org/I14285755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068176594","display_name":"Romain Grall","orcid":null},"institutions":[{"id":"https://openalex.org/I14285755","display_name":"L'Or\u00e9al (France)","ror":"https://ror.org/00nb3j622","country_code":"FR","type":"company","lineage":["https://openalex.org/I14285755"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Romain Grall","raw_affiliation_strings":["L'Or\u00e9al Research and Innovation, Aulnay-sous-Bois, France","L\u2019Or\u00e9al Recherche & Innovation (1 av. Eug\u00e8ne Schueller, 93600 Aulnay-sous-Bois - France)"],"affiliations":[{"raw_affiliation_string":"L'Or\u00e9al Research and Innovation, Aulnay-sous-Bois, France","institution_ids":["https://openalex.org/I14285755"]},{"raw_affiliation_string":"L\u2019Or\u00e9al Recherche & Innovation (1 av. Eug\u00e8ne Schueller, 93600 Aulnay-sous-Bois - France)","institution_ids":["https://openalex.org/I14285755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090564289","display_name":"Alban Ott","orcid":null},"institutions":[{"id":"https://openalex.org/I14285755","display_name":"L'Or\u00e9al (France)","ror":"https://ror.org/00nb3j622","country_code":"FR","type":"company","lineage":["https://openalex.org/I14285755"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alban Ott","raw_affiliation_strings":["L'Or\u00e9al Research and Innovation, Aulnay-sous-Bois, France","L\u2019Or\u00e9al Recherche & Innovation (1 av. Eug\u00e8ne Schueller, 93600 Aulnay-sous-Bois - France)"],"affiliations":[{"raw_affiliation_string":"L'Or\u00e9al Research and Innovation, Aulnay-sous-Bois, France","institution_ids":["https://openalex.org/I14285755"]},{"raw_affiliation_string":"L\u2019Or\u00e9al Recherche & Innovation (1 av. Eug\u00e8ne Schueller, 93600 Aulnay-sous-Bois - France)","institution_ids":["https://openalex.org/I14285755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021292416","display_name":"Bernard Fromenty","orcid":"https://orcid.org/0000-0003-2994-5465"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210155724","display_name":"Centre Hospitalier Universitaire de Rennes","ror":"https://ror.org/05qec5a53","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210155724"]},{"id":"https://openalex.org/I4387156410","display_name":"Nutrition, m\u00e9tabolismes et cancer","ror":"https://ror.org/03zb6nw87","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210088668","https://openalex.org/I4387156410","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Bernard Fromenty","raw_affiliation_strings":["Institut NUMECAN (Nutrition Metabolisms and Cancer) UMR_A 1317, UMR_S 1241, INSERM, Univ Rennes, INRAE, 35000, Rennes, France","NuMeCan - Nutrition, M\u00e9tabolismes et Cancer (Campus Villejean (B\u00e2t 8) - CHU Rennes (B\u00e2t 15) - Universit\u00e9 de Rennes 1, 2 Avenue du Professeur L\u00e9on Bernard, 35043 Rennes, France - France)"],"affiliations":[{"raw_affiliation_string":"Institut NUMECAN (Nutrition Metabolisms and Cancer) UMR_A 1317, UMR_S 1241, INSERM, Univ Rennes, INRAE, 35000, Rennes, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I56067802","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"NuMeCan - Nutrition, M\u00e9tabolismes et Cancer (Campus Villejean (B\u00e2t 8) - CHU Rennes (B\u00e2t 15) - Universit\u00e9 de Rennes 1, 2 Avenue du Professeur L\u00e9on Bernard, 35043 Rennes, France - France)","institution_ids":["https://openalex.org/I4387156410","https://openalex.org/I4210155724","https://openalex.org/I56067802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114063382","display_name":"Jean-Cl\u00e9ment Gallardo","orcid":null},"institutions":[{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555"]},{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210100066","display_name":"Toxalim Research Centre in Food Toxicology","ror":"https://ror.org/0111a5077","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210100066","https://openalex.org/I4210121065"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Cl\u00e9ment Gallardo","raw_affiliation_strings":["UMR1331 Toxalim (Research Centre in Food Toxicology), Universit\u00e9 de Toulouse, INRAE, ENVT, INP-Purpan, UPS, Toulouse, France","ToxAlim - ToxAlim (23 ch. Capelles 31076 TOULOUSE - France)"],"affiliations":[{"raw_affiliation_string":"UMR1331 Toxalim (Research Centre in Food Toxicology), Universit\u00e9 de Toulouse, INRAE, ENVT, INP-Purpan, UPS, Toulouse, France","institution_ids":["https://openalex.org/I4210100066","https://openalex.org/I134560555","https://openalex.org/I17866349","https://openalex.org/I176063091","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"ToxAlim - ToxAlim (23 ch. Capelles 31076 TOULOUSE - France)","institution_ids":["https://openalex.org/I4210100066"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035596720","display_name":"Maximilian Stingl","orcid":"https://orcid.org/0000-0002-9513-5869"},"institutions":[{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555"]},{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210100066","display_name":"Toxalim Research Centre in Food Toxicology","ror":"https://ror.org/0111a5077","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210100066","https://openalex.org/I4210121065"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Maximilian Stingl","raw_affiliation_strings":["UMR1331 Toxalim (Research Centre in Food Toxicology), Universit\u00e9 de Toulouse, INRAE, ENVT, INP-Purpan, UPS, Toulouse, France","ToxAlim - ToxAlim (23 ch. Capelles 31076 TOULOUSE - France)"],"affiliations":[{"raw_affiliation_string":"UMR1331 Toxalim (Research Centre in Food Toxicology), Universit\u00e9 de Toulouse, INRAE, ENVT, INP-Purpan, UPS, Toulouse, France","institution_ids":["https://openalex.org/I4210100066","https://openalex.org/I134560555","https://openalex.org/I17866349","https://openalex.org/I176063091","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"ToxAlim - ToxAlim (23 ch. Capelles 31076 TOULOUSE - France)","institution_ids":["https://openalex.org/I4210100066"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081946997","display_name":"Cl\u00e9ment Frainay","orcid":"https://orcid.org/0000-0003-4313-2786"},"institutions":[{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555"]},{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210100066","display_name":"Toxalim Research Centre in Food Toxicology","ror":"https://ror.org/0111a5077","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210100066","https://openalex.org/I4210121065"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Cl\u00e9ment Frainay","raw_affiliation_strings":["UMR1331 Toxalim (Research Centre in Food Toxicology), Universit\u00e9 de Toulouse, INRAE, ENVT, INP-Purpan, UPS, Toulouse, France","ToxAlim - ToxAlim (23 ch. Capelles 31076 TOULOUSE - France)"],"affiliations":[{"raw_affiliation_string":"UMR1331 Toxalim (Research Centre in Food Toxicology), Universit\u00e9 de Toulouse, INRAE, ENVT, INP-Purpan, UPS, Toulouse, France","institution_ids":["https://openalex.org/I4210100066","https://openalex.org/I134560555","https://openalex.org/I17866349","https://openalex.org/I176063091","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"ToxAlim - ToxAlim (23 ch. Capelles 31076 TOULOUSE - France)","institution_ids":["https://openalex.org/I4210100066"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008100854","display_name":"Fabien Jourdan","orcid":"https://orcid.org/0000-0001-9401-2894"},"institutions":[{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555"]},{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210100066","display_name":"Toxalim Research Centre in Food Toxicology","ror":"https://ror.org/0111a5077","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210100066","https://openalex.org/I4210121065"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fabien Jourdan","raw_affiliation_strings":["MetaboHUB-MetaToul, National Infrastructure of Metabolomics and Fluxomics, Toulouse, France","UMR1331 Toxalim (Research Centre in Food Toxicology), Universit\u00e9 de Toulouse, INRAE, ENVT, INP-Purpan, UPS, Toulouse, France","MetaboHUB-MetaToul (Regroupement de 4 plateformes technologiques et d\u2019expertises \r\nToulouse - France)","ToxAlim - ToxAlim (23 ch. Capelles 31076 TOULOUSE - France)"],"affiliations":[{"raw_affiliation_string":"MetaboHUB-MetaToul, National Infrastructure of Metabolomics and Fluxomics, Toulouse, France","institution_ids":[]},{"raw_affiliation_string":"UMR1331 Toxalim (Research Centre in Food Toxicology), Universit\u00e9 de Toulouse, INRAE, ENVT, INP-Purpan, UPS, Toulouse, France","institution_ids":["https://openalex.org/I4210100066","https://openalex.org/I134560555","https://openalex.org/I17866349","https://openalex.org/I176063091","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"MetaboHUB-MetaToul (Regroupement de 4 plateformes technologiques et d\u2019expertises \r\nToulouse - France)","institution_ids":[]},{"raw_affiliation_string":"ToxAlim - ToxAlim (23 ch. Capelles 31076 TOULOUSE - France)","institution_ids":["https://openalex.org/I4210100066"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051880093","display_name":"Nathalie Poupin","orcid":"https://orcid.org/0000-0002-3393-1405"},"institutions":[{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555"]},{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210100066","display_name":"Toxalim Research Centre in Food Toxicology","ror":"https://ror.org/0111a5077","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210100066","https://openalex.org/I4210121065"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nathalie Poupin","raw_affiliation_strings":["UMR1331 Toxalim (Research Centre in Food Toxicology), Universit\u00e9 de Toulouse, INRAE, ENVT, INP-Purpan, UPS, Toulouse, France. nathalie.poupin@inrae.fr","ToxAlim - ToxAlim (23 ch. Capelles 31076 TOULOUSE - France)"],"affiliations":[{"raw_affiliation_string":"UMR1331 Toxalim (Research Centre in Food Toxicology), Universit\u00e9 de Toulouse, INRAE, ENVT, INP-Purpan, UPS, Toulouse, France. nathalie.poupin@inrae.fr","institution_ids":["https://openalex.org/I134560555","https://openalex.org/I4210100066","https://openalex.org/I176063091","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"ToxAlim - ToxAlim (23 ch. Capelles 31076 TOULOUSE - France)","institution_ids":["https://openalex.org/I4210100066"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5042374222"],"corresponding_institution_ids":["https://openalex.org/I134560555","https://openalex.org/I14285755","https://openalex.org/I176063091","https://openalex.org/I4210088668","https://openalex.org/I4210100066"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.229,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.5593581,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"25","issue":"1","first_page":"234","last_page":"234"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/enumeration","display_name":"Enumeration","score":0.7763781547546387},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7202014923095703},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6851038336753845},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.6237898468971252},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4971008598804474},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4913770258426666},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4324575364589691},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39277687668800354},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24272236227989197},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1335901916027069}],"concepts":[{"id":"https://openalex.org/C156340839","wikidata":"https://www.wikidata.org/wiki/Q2704791","display_name":"Enumeration","level":2,"score":0.7763781547546387},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7202014923095703},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6851038336753845},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.6237898468971252},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4971008598804474},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4913770258426666},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4324575364589691},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39277687668800354},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24272236227989197},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1335901916027069},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-024-05845-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05845-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05845-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38992584","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38992584","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-04652792v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04652792","pdf_url":"https://hal.science/hal-04652792/document","source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2024, 25 (1), pp.234. &#x27E8;10.1186/s12859-024-05845-z&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:11238488","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11238488","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11238488/pdf/12859_2024_Article_5845.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:f6f5cfe4075a4c539bfffd1a4d014ba0","is_oa":true,"landing_page_url":"https://doaj.org/article/f6f5cfe4075a4c539bfffd1a4d014ba0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 25, Iss 1, Pp 1-32 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05845-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05845-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05845-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3335229504","display_name":null,"funder_award_id":"Avenir","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3635184277","display_name":null,"funder_award_id":"11-INBS-0010","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4110391279","display_name":null,"funder_award_id":"project,","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320321663","display_name":"Association Nationale de la Recherche et de la Technologie","ror":"https://ror.org/00ht2ab73"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4400557340.pdf","grobid_xml":"https://content.openalex.org/works/W4400557340.grobid-xml"},"referenced_works_count":77,"referenced_works":["https://openalex.org/W81108490","https://openalex.org/W130546658","https://openalex.org/W1578392316","https://openalex.org/W1608939378","https://openalex.org/W1976672440","https://openalex.org/W1997707310","https://openalex.org/W2007572995","https://openalex.org/W2009282793","https://openalex.org/W2010393673","https://openalex.org/W2016716965","https://openalex.org/W2018669333","https://openalex.org/W2020174722","https://openalex.org/W2025172803","https://openalex.org/W2035360701","https://openalex.org/W2045921664","https://openalex.org/W2049792326","https://openalex.org/W2063168697","https://openalex.org/W2078116112","https://openalex.org/W2085993965","https://openalex.org/W2099536383","https://openalex.org/W2101778955","https://openalex.org/W2103041540","https://openalex.org/W2110723933","https://openalex.org/W2113878188","https://openalex.org/W2116634113","https://openalex.org/W2116766270","https://openalex.org/W2117691193","https://openalex.org/W2117937654","https://openalex.org/W2121604817","https://openalex.org/W2123454534","https://openalex.org/W2125209024","https://openalex.org/W2132218677","https://openalex.org/W2143511244","https://openalex.org/W2148619299","https://openalex.org/W2154061034","https://openalex.org/W2169353806","https://openalex.org/W2169528473","https://openalex.org/W2170989872","https://openalex.org/W2172129062","https://openalex.org/W2260075228","https://openalex.org/W2315571987","https://openalex.org/W2401610261","https://openalex.org/W2418056440","https://openalex.org/W2535762306","https://openalex.org/W2544249908","https://openalex.org/W2587946751","https://openalex.org/W2612467560","https://openalex.org/W2618684004","https://openalex.org/W2718755343","https://openalex.org/W2755499387","https://openalex.org/W2789128799","https://openalex.org/W2791888856","https://openalex.org/W2801218382","https://openalex.org/W2887055972","https://openalex.org/W2895370278","https://openalex.org/W2899598286","https://openalex.org/W2906442284","https://openalex.org/W2969638481","https://openalex.org/W2979832776","https://openalex.org/W2982686404","https://openalex.org/W2994351443","https://openalex.org/W3013554928","https://openalex.org/W3026272155","https://openalex.org/W3027461786","https://openalex.org/W3034500973","https://openalex.org/W3107685887","https://openalex.org/W3127124050","https://openalex.org/W3129067354","https://openalex.org/W3136308181","https://openalex.org/W3178220414","https://openalex.org/W3196948502","https://openalex.org/W3213317506","https://openalex.org/W4205234909","https://openalex.org/W4206963778","https://openalex.org/W4283381131","https://openalex.org/W4307430886","https://openalex.org/W4388539829"],"related_works":["https://openalex.org/W2158714033","https://openalex.org/W2072067873","https://openalex.org/W78967844","https://openalex.org/W2047632644","https://openalex.org/W2031492751","https://openalex.org/W3213185671","https://openalex.org/W4210989272","https://openalex.org/W4206945140","https://openalex.org/W4386628104","https://openalex.org/W3033588432"],"abstract_inverted_index":{"The":[0,25,42,66],"proposed":[1],"strategy":[2,68],"allows":[3],"toxicology":[4],"experts":[5],"to":[6,15,21,44],"decipher":[7],"which":[8],"part":[9],"of":[10,32,52,60],"cellular":[11],"metabolism":[12],"is":[13,69],"expected":[14],"be":[16],"affected":[17],"by":[18],"the":[19,30,49,53],"exposition":[20],"a":[22,73],"given":[23],"chemical.":[24],"approach":[26,54],"originality":[27],"resides":[28],"in":[29,63],"combination":[31],"different":[33],"metabolic":[34],"modelling":[35],"approaches":[36],"(constraint":[37],"based":[38],"and":[39,57,79],"graph":[40],"modelling).":[41],"application":[43],"two":[45],"model":[46],"molecules":[47],"shows":[48],"strong":[50],"potential":[51],"for":[55],"interpretation":[56],"visual":[58],"mining":[59],"complex":[61],"omics":[62],"vitro":[64],"data.":[65],"presented":[67],"freely":[70],"available":[71],"as":[72],"python":[74],"module":[75],"(":[76,82],"https://pypi.org/project/manamodeller/":[77],")":[78],"jupyter":[80],"notebooks":[81],"https://github.com/LouisonF/MANA":[83],").":[84]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
