{"id":"https://openalex.org/W4399776099","doi":"https://doi.org/10.1186/s12859-024-05842-2","title":"SATIN: a micro and mini satellite mining tool of total genome and coding regions with analysis of perfect repeats polymorphism in coding regions","display_name":"SATIN: a micro and mini satellite mining tool of total genome and coding regions with analysis of perfect repeats polymorphism in coding regions","publication_year":2024,"publication_date":"2024-06-18","ids":{"openalex":"https://openalex.org/W4399776099","doi":"https://doi.org/10.1186/s12859-024-05842-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/38890569"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05842-2","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-024-05842-2","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05842-2.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05842-2.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006890209","display_name":"Carlos Willian Dias Dantas","orcid":"https://orcid.org/0000-0002-3681-7886"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Carlos Willian Dias Dantas","raw_affiliation_strings":["Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, Brazil. cwillian@ufmg.br","Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, Brazil. cwillian@ufmg.br","institution_ids":["https://openalex.org/I110200422"]},{"raw_affiliation_string":"Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104330538","display_name":"Sebasti\u00e3o Rodrigues da Costa Neto","orcid":null},"institutions":[{"id":"https://openalex.org/I59606676","display_name":"Universidade Federal do Par\u00e1","ror":"https://ror.org/03q9sr818","country_code":"BR","type":"education","lineage":["https://openalex.org/I59606676"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Sebasti\u00e3o Rodrigues da Costa Neto","raw_affiliation_strings":["Simulation and Computational Biology Laboratory, High Performance Computing Center, Federal University of Par\u00e1, Bel\u00e9m, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Simulation and Computational Biology Laboratory, High Performance Computing Center, Federal University of Par\u00e1, Bel\u00e9m, Brazil","institution_ids":["https://openalex.org/I59606676"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000941649","display_name":"Sandy Ingrid Aguiar Alves","orcid":"https://orcid.org/0000-0002-9768-4319"},"institutions":[{"id":"https://openalex.org/I59606676","display_name":"Universidade Federal do Par\u00e1","ror":"https://ror.org/03q9sr818","country_code":"BR","type":"education","lineage":["https://openalex.org/I59606676"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Sandy Ingrid Aguiar Alves","raw_affiliation_strings":["Simulation and Computational Biology Laboratory, High Performance Computing Center, Federal University of Par\u00e1, Bel\u00e9m, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Simulation and Computational Biology Laboratory, High Performance Computing Center, Federal University of Par\u00e1, Bel\u00e9m, Brazil","institution_ids":["https://openalex.org/I59606676"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081442197","display_name":"Kenny da Costa Pinheiro","orcid":"https://orcid.org/0000-0003-3452-9271"},"institutions":[{"id":"https://openalex.org/I59606676","display_name":"Universidade Federal do Par\u00e1","ror":"https://ror.org/03q9sr818","country_code":"BR","type":"education","lineage":["https://openalex.org/I59606676"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Kenny da Costa Pinheiro","raw_affiliation_strings":["Simulation and Computational Biology Laboratory, High Performance Computing Center, Federal University of Par\u00e1, Bel\u00e9m, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Simulation and Computational Biology Laboratory, High Performance Computing Center, Federal University of Par\u00e1, Bel\u00e9m, Brazil","institution_ids":["https://openalex.org/I59606676"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077858559","display_name":"Edian Franklin Franco De Los Santos","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137134","display_name":"Universidad Tecnol\u00f3gica de Santiago","ror":"https://ror.org/03az81r49","country_code":"DO","type":"education","lineage":["https://openalex.org/I4210137134"]}],"countries":["DO"],"is_corresponding":false,"raw_author_name":"Edian Franklin Franco De Los Santos","raw_affiliation_strings":["Universidad Tecnol\u00f3gica de Santiago, Campus Central de Herrera, Isabel Aguiar No. 61 21243, Santo Domingo, Dominican Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universidad Tecnol\u00f3gica de Santiago, Campus Central de Herrera, Isabel Aguiar No. 61 21243, Santo Domingo, Dominican Republic","institution_ids":["https://openalex.org/I4210137134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076978229","display_name":"Rommel Thiago Juc\u00e1 Ramos","orcid":"https://orcid.org/0000-0002-8032-1474"},"institutions":[{"id":"https://openalex.org/I59606676","display_name":"Universidade Federal do Par\u00e1","ror":"https://ror.org/03q9sr818","country_code":"BR","type":"education","lineage":["https://openalex.org/I59606676"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Rommel Thiago Juc\u00e1 Ramos","raw_affiliation_strings":["Simulation and Computational Biology Laboratory, High Performance Computing Center, Federal University of Par\u00e1, Bel\u00e9m, Brazil. rommelramos@ufpa.br","Simulation and Computational Biology Laboratory, High Performance Computing Center, Federal University of Par\u00e1, Bel\u00e9m, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Simulation and Computational Biology Laboratory, High Performance Computing Center, Federal University of Par\u00e1, Bel\u00e9m, Brazil. rommelramos@ufpa.br","institution_ids":["https://openalex.org/I59606676"]},{"raw_affiliation_string":"Simulation and Computational Biology Laboratory, High Performance Computing Center, Federal University of Par\u00e1, Bel\u00e9m, Brazil","institution_ids":["https://openalex.org/I59606676"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5006890209","https://openalex.org/A5076978229"],"corresponding_institution_ids":["https://openalex.org/I110200422","https://openalex.org/I59606676"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.5182,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.75583506,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"25","issue":"1","first_page":"217","last_page":"217"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.5342000126838684,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.5342000126838684,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.2061000019311905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.040699999779462814,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microsatellite","display_name":"Microsatellite","score":0.8824854493141174},{"id":"https://openalex.org/keywords/tandem-repeat","display_name":"Tandem repeat","score":0.5067525506019592},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46040546894073486},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4243192672729492},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3997480273246765},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3450024724006653},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32150185108184814},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21331539750099182},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.06355321407318115}],"concepts":[{"id":"https://openalex.org/C61320498","wikidata":"https://www.wikidata.org/wiki/Q265193","display_name":"Microsatellite","level":4,"score":0.8824854493141174},{"id":"https://openalex.org/C27149982","wikidata":"https://www.wikidata.org/wiki/Q3456514","display_name":"Tandem repeat","level":4,"score":0.5067525506019592},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46040546894073486},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4243192672729492},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3997480273246765},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3450024724006653},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32150185108184814},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21331539750099182},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.06355321407318115}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004276","descriptor_name":"DNA, Satellite","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004276","descriptor_name":"DNA, Satellite","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004276","descriptor_name":"DNA, Satellite","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004276","descriptor_name":"DNA, Satellite","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004276","descriptor_name":"DNA, Satellite","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-024-05842-2","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-024-05842-2","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05842-2.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38890569","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38890569","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11186120","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11186120","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11186120/pdf/12859_2024_Article_5842.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:696dcb4cc3eb4fe7b651d8867e194dbc","is_oa":false,"landing_page_url":"https://doaj.org/article/696dcb4cc3eb4fe7b651d8867e194dbc","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 25, Iss 1, Pp 1-14 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05842-2","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-024-05842-2","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05842-2.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5254795218","display_name":null,"funder_award_id":"312316/2022-4","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"}],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320324369","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32"},{"id":"https://openalex.org/F4320324376","display_name":"Universidade Federal do Par\u00e1","ror":"https://ror.org/03q9sr818"},{"id":"https://openalex.org/F4320334115","display_name":"Pr\u00f3-Reitoria de Pesquisa e P\u00f3s-Gradua\u00e7\u00e3o, Universidade Federal do Par\u00e1","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4399776099.pdf"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1568479515","https://openalex.org/W1980973068","https://openalex.org/W2010251411","https://openalex.org/W2019382189","https://openalex.org/W2039752257","https://openalex.org/W2044274267","https://openalex.org/W2081629897","https://openalex.org/W2085315239","https://openalex.org/W2103704875","https://openalex.org/W2119114298","https://openalex.org/W2124281279","https://openalex.org/W2132394658","https://openalex.org/W2141299165","https://openalex.org/W2143587090","https://openalex.org/W2150641734","https://openalex.org/W2161455016","https://openalex.org/W2162098634","https://openalex.org/W2293250865","https://openalex.org/W2334167823","https://openalex.org/W2488220022","https://openalex.org/W2605276928","https://openalex.org/W2606292401","https://openalex.org/W2617372200","https://openalex.org/W4239371745","https://openalex.org/W4386149787"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2029130118","https://openalex.org/W1654308148","https://openalex.org/W2183689409","https://openalex.org/W2121546023","https://openalex.org/W2058825091","https://openalex.org/W4223943358","https://openalex.org/W4236068647","https://openalex.org/W2385170838","https://openalex.org/W2076281495"],"abstract_inverted_index":{"BACKGROUND:":[0],"Tandem":[1],"repeats":[2],"are":[3,13],"specific":[4,40],"sequences":[5],"in":[6,10,15,71,98,118,269,286],"genomic":[7],"DNA":[8],"repeated":[9],"tandem":[11],"that":[12,27,233],"present":[14,285],"all":[16,211],"organisms.":[17],"Among":[18],"the":[19,36,72,112,134,159,200],"subcategories":[20],"of":[21,39,114,192,266],"TRs":[22],"we":[23,186,294],"have":[24],"Satellite":[25],"repeats,":[26],"is":[28,124,227,262],"divided":[29],"into":[30],"macrosatellites,":[31],"minisatellites,":[32],"and":[33,64,85,100,139,173,196,198,252,258],"microsatellites,":[34],"being":[35,280],"last":[37],"two":[38,190],"interest":[41],"because":[42],"they":[43],"can":[44,68,144,163],"identify":[45,69,145,174,250,283,299],"polymorphisms":[46],"between":[47],"organisms":[48],"due":[49],"to":[50,107,132,249,282,297,302],"their":[51],"instability.":[52],"Currently,":[53],"most":[54],"mining":[55,80,109],"tools":[56],"focus":[57],"on":[58,91,168,180,222,241],"Simple":[59],"Sequence":[60],"Repeats":[61],"(SSR)":[62],"mining,":[63,161,278],"only":[65],"a":[66,78,92,104,181,228,242,263],"few":[67],"SSRs":[70,146,151,166,175,188,205,213,254,284,301],"coding":[73,119,148,207,287],"regions.":[74,208],"RESULTS:":[75],"We":[76],"developed":[77],"microsatellite":[79,230,277],"software":[81,232],"called":[82],"SATIN":[83,123,162,209,226,296],"(Micro":[84],"Mini":[86],"SATellite":[87],"IdentificatioN":[88],"tool)":[89],"based":[90,240],"new":[93,105],"sliding":[94,237],"window":[95,238],"algorithm":[96],"written":[97],"C":[99],"Python.":[101],"It":[102,129,143,261],"represents":[103],"approach":[106],"SSR":[108,121,141,160,221],"by":[110],"addressing":[111],"limitations":[113],"existing":[115],"tools,":[116],"particularly":[117],"region":[120,247],"mining.":[122,142],"available":[125],"at":[126,218],"https://github.com/labgm/SATIN.git":[127],".":[128],"was":[130],"shown":[131],"be":[133,303],"second":[135],"fastest":[136],"for":[137,245,276,289],"perfect":[138],"compound":[140],"from":[147,170,189,206,214],"regions":[149,288],"plus":[150],"with":[152,202,217],"motif":[153],"sizes":[154],"bigger":[155],"than":[156],"6.":[157],"Besides":[158],"also":[164,279],"analyze":[165],"polymorphism":[167],"coding-regions":[169],"pre-determined":[171],"groups,":[172],"differentially":[176],"abundant":[177],"among":[178],"them":[179],"per-gene":[182],"basis.":[183],"To":[184],"validate,":[185],"analyzed":[187],"groups":[191],"Escherichia":[193],"coli":[194],"(K12":[195],"O157)":[197],"compared":[199],"results":[201],"5":[203,212],"known":[204],"identified":[210],"237":[215],"genes":[216],"least":[219],"one":[220],"it.":[223],"CONCLUSIONS:":[224],"The":[225],"novel":[229],"search":[231,248],"utilizes":[234],"an":[235],"innovative":[236],"technique":[239],"numerical":[243],"list":[244],"repeat":[246],"perfect,":[251],"composite":[253],"while":[255],"generating":[256],"comprehensible":[257],"analyzable":[259],"outputs.":[260],"tool":[264],"capable":[265],"using":[267],"files":[268],"fasta":[270],"or":[271],"GenBank":[272,290],"format":[273],"as":[274,305],"input":[275],"able":[281],"files.":[291],"In":[292],"conclusion,":[293],"expect":[295],"help":[298],"potential":[300],"used":[304],"genetic":[306],"markers.":[307]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}