{"id":"https://openalex.org/W4400686176","doi":"https://doi.org/10.1186/s12859-024-05832-4","title":"Orthanq: transparent and uncertainty-aware haplotype quantification with application in HLA-typing","display_name":"Orthanq: transparent and uncertainty-aware haplotype quantification with application in HLA-typing","publication_year":2024,"publication_date":"2024-07-16","ids":{"openalex":"https://openalex.org/W4400686176","doi":"https://doi.org/10.1186/s12859-024-05832-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/39014339"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05832-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05832-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05832-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05832-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031639501","display_name":"Hamdiye Uzuner","orcid":"https://orcid.org/0000-0001-8448-7968"},"institutions":[{"id":"https://openalex.org/I62318514","display_name":"University of Duisburg-Essen","ror":"https://ror.org/04mz5ra38","country_code":"DE","type":"education","lineage":["https://openalex.org/I62318514"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Hamdiye Uzuner","raw_affiliation_strings":["Bioinformatics and Computational Oncology, Institute for Artifical Intelligence in Medicine (IKIM), University Hospital Essen, Faculty of Medicine, University of Duisburg-Essen, Essen, Germany. hamdiye.uzuner@uni-due.de","Bioinformatics and Computational Oncology, Institute for Artifical Intelligence in Medicine (IKIM), University Hospital Essen, Faculty of Medicine, University of Duisburg-Essen, Essen, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Oncology, Institute for Artifical Intelligence in Medicine (IKIM), University Hospital Essen, Faculty of Medicine, University of Duisburg-Essen, Essen, Germany. hamdiye.uzuner@uni-due.de","institution_ids":["https://openalex.org/I62318514"]},{"raw_affiliation_string":"Bioinformatics and Computational Oncology, Institute for Artifical Intelligence in Medicine (IKIM), University Hospital Essen, Faculty of Medicine, University of Duisburg-Essen, Essen, Germany","institution_ids":["https://openalex.org/I62318514"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044921528","display_name":"Annette Paschen","orcid":"https://orcid.org/0000-0003-1651-1262"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Annette Paschen","raw_affiliation_strings":["Department of Dermatology, West German Cancer Center, University Hospital Essen, University Duisburg-Essen, Essen, Germany","German Consortium for Translational Cancer Research (DKTK), Partner Site Essen/D\u00fcsseldorf, Essen, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Dermatology, West German Cancer Center, University Hospital Essen, University Duisburg-Essen, Essen, Germany","institution_ids":[]},{"raw_affiliation_string":"German Consortium for Translational Cancer Research (DKTK), Partner Site Essen/D\u00fcsseldorf, Essen, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034365278","display_name":"Dirk Schadendorf","orcid":"https://orcid.org/0000-0003-3524-7858"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dirk Schadendorf","raw_affiliation_strings":["Department of Dermatology, West German Cancer Center, University Hospital Essen, University Duisburg-Essen, Essen, Germany","German Consortium for Translational Cancer Research (DKTK), Partner Site Essen/D\u00fcsseldorf, Essen, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Dermatology, West German Cancer Center, University Hospital Essen, University Duisburg-Essen, Essen, Germany","institution_ids":[]},{"raw_affiliation_string":"German Consortium for Translational Cancer Research (DKTK), Partner Site Essen/D\u00fcsseldorf, Essen, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005124395","display_name":"Johannes K\u00f6ster","orcid":"https://orcid.org/0000-0001-9818-9320"},"institutions":[{"id":"https://openalex.org/I62318514","display_name":"University of Duisburg-Essen","ror":"https://ror.org/04mz5ra38","country_code":"DE","type":"education","lineage":["https://openalex.org/I62318514"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Johannes K\u00f6ster","raw_affiliation_strings":["Bioinformatics and Computational Oncology, Institute for Artifical Intelligence in Medicine (IKIM), University Hospital Essen, Faculty of Medicine, University of Duisburg-Essen, Essen, Germany","German Consortium for Translational Cancer Research (DKTK), Partner Site Essen/D\u00fcsseldorf, Essen, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Oncology, Institute for Artifical Intelligence in Medicine (IKIM), University Hospital Essen, Faculty of Medicine, University of Duisburg-Essen, Essen, Germany","institution_ids":["https://openalex.org/I62318514"]},{"raw_affiliation_string":"German Consortium for Translational Cancer Research (DKTK), Partner Site Essen/D\u00fcsseldorf, Essen, Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5031639501"],"corresponding_institution_ids":["https://openalex.org/I62318514"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.2475,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.567019,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"25","issue":"1","first_page":"240","last_page":"240"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11660","display_name":"Blood groups and transfusion","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/2720","display_name":"Hematology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.6658825874328613},{"id":"https://openalex.org/keywords/typing","display_name":"Typing","score":0.6608513593673706},{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.6340938210487366},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5522060394287109},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4845932722091675},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4614502191543579},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3322297930717468},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2752242684364319},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.13686448335647583},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08807316422462463},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.0710313618183136}],"concepts":[{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.6658825874328613},{"id":"https://openalex.org/C2781209916","wikidata":"https://www.wikidata.org/wiki/Q3215756","display_name":"Typing","level":2,"score":0.6608513593673706},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.6340938210487366},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5522060394287109},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4845932722091675},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4614502191543579},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3322297930717468},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2752242684364319},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.13686448335647583},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08807316422462463},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.0710313618183136},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006650","descriptor_name":"Histocompatibility Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D006650","descriptor_name":"Histocompatibility Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D006650","descriptor_name":"Histocompatibility Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D006650","descriptor_name":"Histocompatibility Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D006650","descriptor_name":"Histocompatibility Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035501","descriptor_name":"Uncertainty","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035501","descriptor_name":"Uncertainty","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035501","descriptor_name":"Uncertainty","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035501","descriptor_name":"Uncertainty","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035501","descriptor_name":"Uncertainty","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-024-05832-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05832-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05832-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39014339","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39014339","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11253481","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11253481","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11253481/pdf/12859_2024_Article_5832.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:bibliographie.ub.uni-due.de:ubo_mods_00224734","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pubmed/39014339","pdf_url":null,"source":{"id":"https://openalex.org/S7407055102","display_name":"Universit\u00e4tsbibliographie, Universit\u00e4t Duisburg-Essen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Artikel/Aufsatz"},{"id":"pmh:oai:doaj.org/article:a37634a311bf4a9cae76931a655fd557","is_oa":true,"landing_page_url":"https://doaj.org/article/a37634a311bf4a9cae76931a655fd557","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 25, Iss 1, Pp 1-18 (2024)","raw_type":"article"},{"id":"pmh:oai:duepublico2.uni-due.de:duepublico_mods_00083060","is_oa":true,"landing_page_url":"https://duepublico2.uni-due.de/receive/duepublico_mods_00083060","pdf_url":null,"source":{"id":"https://openalex.org/S4306400212","display_name":"DuEPublico (University of Duisburg-Essen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62318514","host_organization_name":"University of Duisburg-Essen","host_organization_lineage":["https://openalex.org/I62318514"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"doc-type:article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05832-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05832-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05832-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4099999964237213}],"awards":[{"id":"https://openalex.org/G6664935745","display_name":null,"funder_award_id":"RTG 2535","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8956359500","display_name":null,"funder_award_id":"70113455","funder_id":"https://openalex.org/F4320323556","funder_display_name":"Deutsche Krebshilfe"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320323556","display_name":"Deutsche Krebshilfe","ror":"https://ror.org/01wxdd722"},{"id":"https://openalex.org/F4320325052","display_name":"Universit\u00e4t Duisburg-Essen","ror":"https://ror.org/04mz5ra38"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4400686176.pdf","grobid_xml":"https://content.openalex.org/works/W4400686176.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1510065737","https://openalex.org/W1675903889","https://openalex.org/W2104549677","https://openalex.org/W2112113834","https://openalex.org/W2112491025","https://openalex.org/W2136957315","https://openalex.org/W2150056019","https://openalex.org/W2161710954","https://openalex.org/W2162495518","https://openalex.org/W2323326409","https://openalex.org/W2605820408","https://openalex.org/W2612936457","https://openalex.org/W2765745983","https://openalex.org/W2789843538","https://openalex.org/W2888300707","https://openalex.org/W2898301137","https://openalex.org/W2898371836","https://openalex.org/W2951529834","https://openalex.org/W2952870794","https://openalex.org/W2984055282","https://openalex.org/W2987502822","https://openalex.org/W3000174416","https://openalex.org/W3017512083","https://openalex.org/W3089079506","https://openalex.org/W4200597270","https://openalex.org/W4376133202","https://openalex.org/W6770113330"],"related_works":["https://openalex.org/W3146762847","https://openalex.org/W2398263405","https://openalex.org/W3176169626","https://openalex.org/W2056886854","https://openalex.org/W4283775834","https://openalex.org/W2888997879","https://openalex.org/W4212841426","https://openalex.org/W2368089815","https://openalex.org/W2394331430","https://openalex.org/W2413704448"],"abstract_inverted_index":{"Orthanq":[0,33],"is":[1,34],"the":[2],"first":[3],"approach":[4],"that":[5],"allows":[6],"to":[7],"directly":[8],"utilize":[9],"existing":[10],"pangenome":[11],"alignments":[12],"and":[13],"type":[14],"all":[15],"HLA":[16,26],"loci.":[17],"Moreover,":[18],"it":[19],"can":[20],"be":[21],"generalized":[22],"for":[23,29],"usages":[24],"beyond":[25],"typing,":[27],"e.g.":[28],"virus":[30],"lineage":[31],"quantification.":[32],"available":[35],"under":[36],"https://orthanq.github.io":[37],".":[38]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}
