{"id":"https://openalex.org/W4396780049","doi":"https://doi.org/10.1186/s12859-024-05803-9","title":"OMD Curation Toolkit: a workflow for in-house curation of public omics datasets","display_name":"OMD Curation Toolkit: a workflow for in-house curation of public omics datasets","publication_year":2024,"publication_date":"2024-05-09","ids":{"openalex":"https://openalex.org/W4396780049","doi":"https://doi.org/10.1186/s12859-024-05803-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/38724907"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05803-9","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-024-05803-9","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05803-9.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05803-9.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017275141","display_name":"Samuel Piquer-Esteban","orcid":"https://orcid.org/0000-0003-2340-1125"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]},{"id":"https://openalex.org/I4210097149","display_name":"Fundaci\u00f3n para el Fomento de la Investigaci\u00f3n Sanitaria y Biom\u00e9dica de la Comunitat Valenciana","ror":"https://ror.org/0116vew40","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210097149"]},{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Samuel Piquer-Esteban","raw_affiliation_strings":["Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencia Region (FISABIO-Public Health), Valencia, Spain. samuel.piquer@uv.es","Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Spanish National Research Council, Valencia, Spain. samuel.piquer@uv.es","Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Spanish National Research Council, Valencia, Spain"],"affiliations":[{"raw_affiliation_string":"Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencia Region (FISABIO-Public Health), Valencia, Spain. samuel.piquer@uv.es","institution_ids":["https://openalex.org/I4210097149"]},{"raw_affiliation_string":"Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Spanish National Research Council, Valencia, Spain. samuel.piquer@uv.es","institution_ids":["https://openalex.org/I4210152685"]},{"raw_affiliation_string":"Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Spanish National Research Council, Valencia, Spain","institution_ids":["https://openalex.org/I4210152685","https://openalex.org/I134820265","https://openalex.org/I16097986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028864594","display_name":"Vicente Arnau","orcid":"https://orcid.org/0000-0002-1388-6141"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]},{"id":"https://openalex.org/I4210097149","display_name":"Fundaci\u00f3n para el Fomento de la Investigaci\u00f3n Sanitaria y Biom\u00e9dica de la Comunitat Valenciana","ror":"https://ror.org/0116vew40","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210097149"]},{"id":"https://openalex.org/I4210111366","display_name":"Centre for Biomedical Network Research on Rare Diseases","ror":"https://ror.org/01ygm5w19","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210111366"]},{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Vicente Arnau","raw_affiliation_strings":["Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencia Region (FISABIO-Public Health), Valencia, Spain","Biomedical Research Networking Centre for Epidemiology and Public Health (CIBEResp), Madrid, Spain","Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Spanish National Research Council, Valencia, Spain"],"affiliations":[{"raw_affiliation_string":"Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencia Region (FISABIO-Public Health), Valencia, Spain","institution_ids":["https://openalex.org/I4210097149"]},{"raw_affiliation_string":"Biomedical Research Networking Centre for Epidemiology and Public Health (CIBEResp), Madrid, Spain","institution_ids":["https://openalex.org/I4210111366"]},{"raw_affiliation_string":"Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Spanish National Research Council, Valencia, Spain","institution_ids":["https://openalex.org/I4210152685","https://openalex.org/I134820265","https://openalex.org/I16097986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076375083","display_name":"Wladimiro D\u0131\u0301az-Villanueva","orcid":"https://orcid.org/0000-0002-8970-4367"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]},{"id":"https://openalex.org/I4210097149","display_name":"Fundaci\u00f3n para el Fomento de la Investigaci\u00f3n Sanitaria y Biom\u00e9dica de la Comunitat Valenciana","ror":"https://ror.org/0116vew40","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210097149"]},{"id":"https://openalex.org/I4210111366","display_name":"Centre for Biomedical Network Research on Rare Diseases","ror":"https://ror.org/01ygm5w19","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210111366"]},{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Wladimiro Diaz","raw_affiliation_strings":["Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencia Region (FISABIO-Public Health), Valencia, Spain","Biomedical Research Networking Centre for Epidemiology and Public Health (CIBEResp), Madrid, Spain","Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Spanish National Research Council, Valencia, Spain"],"affiliations":[{"raw_affiliation_string":"Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencia Region (FISABIO-Public Health), Valencia, Spain","institution_ids":["https://openalex.org/I4210097149"]},{"raw_affiliation_string":"Biomedical Research Networking Centre for Epidemiology and Public Health (CIBEResp), Madrid, Spain","institution_ids":["https://openalex.org/I4210111366"]},{"raw_affiliation_string":"Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Spanish National Research Council, Valencia, Spain","institution_ids":["https://openalex.org/I4210152685","https://openalex.org/I134820265","https://openalex.org/I16097986"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004234488","display_name":"Andr\u00e9s Moy\u00e1","orcid":"https://orcid.org/0000-0002-2867-1119"},"institutions":[{"id":"https://openalex.org/I4210097149","display_name":"Fundaci\u00f3n para el Fomento de la Investigaci\u00f3n Sanitaria y Biom\u00e9dica de la Comunitat Valenciana","ror":"https://ror.org/0116vew40","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210097149"]},{"id":"https://openalex.org/I4210111366","display_name":"Centre for Biomedical Network Research on Rare Diseases","ror":"https://ror.org/01ygm5w19","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210111366"]},{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]},{"id":"https://openalex.org/I4210163440","display_name":"Medical Research Network","ror":"https://ror.org/05e56c835","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210163440"]}],"countries":["ES","US"],"is_corresponding":false,"raw_author_name":"Andr\u00e9s Moya","raw_affiliation_strings":["Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencia Region (FISABIO-Public Health), Valencia, Spain. andres.moya@uv.es","Biomedical Research Networking Centre for Epidemiology and Public Health (CIBEResp), Madrid, Spain. andres.moya@uv.es","Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Spanish National Research Council, Valencia, Spain. andres.moya@uv.es","Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencia Region (FISABIO-Public Health), Valencia, Spain"],"affiliations":[{"raw_affiliation_string":"Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencia Region (FISABIO-Public Health), Valencia, Spain. andres.moya@uv.es","institution_ids":["https://openalex.org/I4210097149"]},{"raw_affiliation_string":"Biomedical Research Networking Centre for Epidemiology and Public Health (CIBEResp), Madrid, Spain. andres.moya@uv.es","institution_ids":["https://openalex.org/I4210163440","https://openalex.org/I4210111366"]},{"raw_affiliation_string":"Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Spanish National Research Council, Valencia, Spain. andres.moya@uv.es","institution_ids":["https://openalex.org/I4210152685"]},{"raw_affiliation_string":"Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencia Region (FISABIO-Public Health), Valencia, Spain","institution_ids":["https://openalex.org/I4210097149"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5017275141"],"corresponding_institution_ids":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210097149","https://openalex.org/I4210152685"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0669315,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"25","issue":"1","first_page":"184","last_page":"184"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.8077952265739441},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7869802117347717},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.475184828042984},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4547405242919922},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4401397705078125},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42533060908317566},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3308885097503662},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.329099178314209},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.23819199204444885}],"concepts":[{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.8077952265739441},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7869802117347717},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.475184828042984},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4547405242919922},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4401397705078125},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42533060908317566},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3308885097503662},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.329099178314209},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.23819199204444885}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-024-05803-9","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-024-05803-9","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05803-9.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38724907","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38724907","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/387997","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/387997","pdf_url":"https://digital.csic.es/bitstream/10261/387997/1/OMData.pdf","source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Publisher's version"},{"id":"pmh:oai:pubmedcentral.nih.gov:11084137","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11084137","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11084137/pdf/12859_2024_Article_5803.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:roderic.uv.es:10550/100771","is_oa":true,"landing_page_url":"https://hdl.handle.net/10550/100771","pdf_url":"https://roderic.uv.es/bitstreams/6095e187-1b72-47e0-be8f-c00db62e55eb/download","source":{"id":"https://openalex.org/S4306400245","display_name":"Repository of Digital Objects for Teaching Research and Culture (University of Valencia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16097986","host_organization_name":"Universitat de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I16097986"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Piquer-Esteban, Samuel Arnau Llombart, Vicente D\u00edaz Villanueva, Wladimiro Moya, Andr\u00e9s   2024 OMD Curation Toolkit: a workflow for in-house curation of public omics datasets Bmc Bioinformatics 25 184 1 7","raw_type":"journal article"},{"id":"pmh:oai:doaj.org/article:8d1f9e01f9d349f2ab9e194f3c1cbded","is_oa":true,"landing_page_url":"https://doaj.org/article/8d1f9e01f9d349f2ab9e194f3c1cbded","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 25, Iss 1, Pp 1-7 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05803-9","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-024-05803-9","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05803-9.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1419670400","display_name":null,"funder_award_id":"GB-I00","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G1497581275","display_name":null,"funder_award_id":"CIPROM/2021/0","funder_id":"https://openalex.org/F4320321864","funder_display_name":"Generalitat Valenciana"},{"id":"https://openalex.org/G1650125035","display_name":null,"funder_award_id":"B-I00","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G3690828678","display_name":null,"funder_award_id":"PID2019","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G3961936889","display_name":null,"funder_award_id":"PID2019-105969GB-I00","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G7698876201","display_name":null,"funder_award_id":"CIPROM/2021/042","funder_id":"https://openalex.org/F4320321864","funder_display_name":"Generalitat Valenciana"}],"funders":[{"id":"https://openalex.org/F4320321864","display_name":"Generalitat Valenciana","ror":"https://ror.org/0097mvx21"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4396780049.pdf","grobid_xml":"https://content.openalex.org/works/W4396780049.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W2116041602","https://openalex.org/W2767316502","https://openalex.org/W2892206041","https://openalex.org/W2949435898","https://openalex.org/W2952200190","https://openalex.org/W2953067954","https://openalex.org/W2999369378","https://openalex.org/W3045315617","https://openalex.org/W3098132351","https://openalex.org/W3121185202","https://openalex.org/W3130317325","https://openalex.org/W3160133333","https://openalex.org/W4285393147","https://openalex.org/W4288749471","https://openalex.org/W4309305890","https://openalex.org/W4310957810","https://openalex.org/W4322730823"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W2701062589","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W4306317641","https://openalex.org/W1488337274","https://openalex.org/W4287611188","https://openalex.org/W2216178707","https://openalex.org/W3095602079"],"abstract_inverted_index":{"Thus,":[0],"it":[1,23],"offers":[2],"valuable":[3],"tools":[4],"for":[5],"the":[6],"in-house":[7],"curation":[8],"previously":[9],"needed":[10],"to":[11,17],"re-use":[12],"public":[13],"omics":[14,34],"data.":[15,39],"Due":[16],"its":[18],"workflow":[19],"structure":[20],"and":[21,28],"capabilities,":[22],"can":[24],"be":[25],"easily":[26],"used":[27],"benefit":[29],"investigators":[30],"in":[31],"developing":[32],"novel":[33],"meta-analyses":[35],"based":[36],"on":[37],"sequencing":[38]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
