{"id":"https://openalex.org/W4396734320","doi":"https://doi.org/10.1186/s12859-024-05801-x","title":"A comparison of RNA-Seq data preprocessing pipelines for transcriptomic predictions across independent studies","display_name":"A comparison of RNA-Seq data preprocessing pipelines for transcriptomic predictions across independent studies","publication_year":2024,"publication_date":"2024-05-08","ids":{"openalex":"https://openalex.org/W4396734320","doi":"https://doi.org/10.1186/s12859-024-05801-x","pmid":"https://pubmed.ncbi.nlm.nih.gov/38720247"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05801-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05801-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05801-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05801-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055517021","display_name":"Richard Van","orcid":"https://orcid.org/0000-0002-0870-4788"},"institutions":[{"id":"https://openalex.org/I4210159456","display_name":"Nevada Division of Public and Behavioral Health","ror":"https://ror.org/04s1s3432","country_code":"US","type":"government","lineage":["https://openalex.org/I2800909037","https://openalex.org/I4210159456"]},{"id":"https://openalex.org/I133999245","display_name":"University of Nevada, Las Vegas","ror":"https://ror.org/0406gha72","country_code":"US","type":"education","lineage":["https://openalex.org/I133999245"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Richard Van","raw_affiliation_strings":["Nevada Institute of Personalized Medicine, Las Vegas, NV, USA","School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA"],"affiliations":[{"raw_affiliation_string":"Nevada Institute of Personalized Medicine, Las Vegas, NV, USA","institution_ids":["https://openalex.org/I4210159456"]},{"raw_affiliation_string":"School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA","institution_ids":["https://openalex.org/I133999245"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005396204","display_name":"Daniel \u00c1lvarez","orcid":"https://orcid.org/0000-0003-1027-2395"},"institutions":[{"id":"https://openalex.org/I133999245","display_name":"University of Nevada, Las Vegas","ror":"https://ror.org/0406gha72","country_code":"US","type":"education","lineage":["https://openalex.org/I133999245"]},{"id":"https://openalex.org/I4210159456","display_name":"Nevada Division of Public and Behavioral Health","ror":"https://ror.org/04s1s3432","country_code":"US","type":"government","lineage":["https://openalex.org/I2800909037","https://openalex.org/I4210159456"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Alvarez","raw_affiliation_strings":["Department of Computer Science, University of Nevada Las Vegas, Las Vegas, NV, USA","Nevada Institute of Personalized Medicine, Las Vegas, NV, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Nevada Las Vegas, Las Vegas, NV, USA","institution_ids":["https://openalex.org/I133999245"]},{"raw_affiliation_string":"Nevada Institute of Personalized Medicine, Las Vegas, NV, USA","institution_ids":["https://openalex.org/I4210159456"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068559239","display_name":"Travis Mize","orcid":"https://orcid.org/0000-0002-3154-6378"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]},{"id":"https://openalex.org/I4210161586","display_name":"Genomic Health (United States)","ror":"https://ror.org/05njgh475","country_code":"US","type":"company","lineage":["https://openalex.org/I4210161586"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Travis Mize","raw_affiliation_strings":["Icahn School of Medicine at Mount Sinai, Institute for Genomic Health, New York City, NY, USA"],"affiliations":[{"raw_affiliation_string":"Icahn School of Medicine at Mount Sinai, Institute for Genomic Health, New York City, NY, USA","institution_ids":["https://openalex.org/I98704320","https://openalex.org/I4210161586"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5096912394","display_name":"Sravani Gannavarapu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159456","display_name":"Nevada Division of Public and Behavioral Health","ror":"https://ror.org/04s1s3432","country_code":"US","type":"government","lineage":["https://openalex.org/I2800909037","https://openalex.org/I4210159456"]},{"id":"https://openalex.org/I133999245","display_name":"University of Nevada, Las Vegas","ror":"https://ror.org/0406gha72","country_code":"US","type":"education","lineage":["https://openalex.org/I133999245"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sravani Gannavarapu","raw_affiliation_strings":["Department of Computer Science, University of Nevada Las Vegas, Las Vegas, NV, USA","Nevada Institute of Personalized Medicine, Las Vegas, NV, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Nevada Las Vegas, Las Vegas, NV, USA","institution_ids":["https://openalex.org/I133999245"]},{"raw_affiliation_string":"Nevada Institute of Personalized Medicine, Las Vegas, NV, USA","institution_ids":["https://openalex.org/I4210159456"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076071243","display_name":"Lohitha Chintham Reddy","orcid":null},"institutions":[{"id":"https://openalex.org/I133999245","display_name":"University of Nevada, Las Vegas","ror":"https://ror.org/0406gha72","country_code":"US","type":"education","lineage":["https://openalex.org/I133999245"]},{"id":"https://openalex.org/I4210159456","display_name":"Nevada Division of Public and Behavioral Health","ror":"https://ror.org/04s1s3432","country_code":"US","type":"government","lineage":["https://openalex.org/I2800909037","https://openalex.org/I4210159456"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lohitha Chintham Reddy","raw_affiliation_strings":["Department of Computer Science, University of Nevada Las Vegas, Las Vegas, NV, USA","Nevada Institute of Personalized Medicine, Las Vegas, NV, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Nevada Las Vegas, Las Vegas, NV, USA","institution_ids":["https://openalex.org/I133999245"]},{"raw_affiliation_string":"Nevada Institute of Personalized Medicine, Las Vegas, NV, USA","institution_ids":["https://openalex.org/I4210159456"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017357492","display_name":"Fatma Nasoz","orcid":"https://orcid.org/0000-0002-9733-6824"},"institutions":[{"id":"https://openalex.org/I133999245","display_name":"University of Nevada, Las Vegas","ror":"https://ror.org/0406gha72","country_code":"US","type":"education","lineage":["https://openalex.org/I133999245"]},{"id":"https://openalex.org/I4210159456","display_name":"Nevada Division of Public and Behavioral Health","ror":"https://ror.org/04s1s3432","country_code":"US","type":"government","lineage":["https://openalex.org/I2800909037","https://openalex.org/I4210159456"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fatma Nasoz","raw_affiliation_strings":["Department of Computer Science, University of Nevada Las Vegas, Las Vegas, NV, USA","Nevada Institute of Personalized Medicine, Las Vegas, NV, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Nevada Las Vegas, Las Vegas, NV, USA","institution_ids":["https://openalex.org/I133999245"]},{"raw_affiliation_string":"Nevada Institute of Personalized Medicine, Las Vegas, NV, USA","institution_ids":["https://openalex.org/I4210159456"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080164890","display_name":"Mira Han","orcid":"https://orcid.org/0000-0002-0488-1170"},"institutions":[{"id":"https://openalex.org/I133999245","display_name":"University of Nevada, Las Vegas","ror":"https://ror.org/0406gha72","country_code":"US","type":"education","lineage":["https://openalex.org/I133999245"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mira V. Han","raw_affiliation_strings":["Nevada Institute of Personalized Medicine, Las Vegas, NV, USA. mira.han@unlv.edu","School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA. mira.han@unlv.edu","School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA"],"affiliations":[{"raw_affiliation_string":"Nevada Institute of Personalized Medicine, Las Vegas, NV, USA. mira.han@unlv.edu","institution_ids":[]},{"raw_affiliation_string":"School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA. mira.han@unlv.edu","institution_ids":[]},{"raw_affiliation_string":"School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA","institution_ids":["https://openalex.org/I133999245"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5055517021"],"corresponding_institution_ids":["https://openalex.org/I133999245","https://openalex.org/I4210159456"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.6803,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.90184683,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"25","issue":"1","first_page":"181","last_page":"181"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.8302305936813354},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7650485038757324},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.5782937407493591},{"id":"https://openalex.org/keywords/data-pre-processing","display_name":"Data pre-processing","score":0.5549027323722839},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5481517314910889},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5041033029556274},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.4808529019355774},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.46914783120155334},{"id":"https://openalex.org/keywords/database-normalization","display_name":"Database normalization","score":0.4502722918987274},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.29685789346694946}],"concepts":[{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.8302305936813354},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7650485038757324},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.5782937407493591},{"id":"https://openalex.org/C10551718","wikidata":"https://www.wikidata.org/wiki/Q5227332","display_name":"Data pre-processing","level":2,"score":0.5549027323722839},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5481517314910889},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5041033029556274},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.4808529019355774},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.46914783120155334},{"id":"https://openalex.org/C162984825","wikidata":"https://www.wikidata.org/wiki/Q339072","display_name":"Database normalization","level":3,"score":0.4502722918987274},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.29685789346694946},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-024-05801-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05801-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05801-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38720247","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38720247","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11080237","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11080237","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11080237/pdf/12859_2024_Article_5801.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:1f53e28f104c412b8a2fb317eca5b915","is_oa":true,"landing_page_url":"https://doaj.org/article/1f53e28f104c412b8a2fb317eca5b915","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 25, Iss 1, Pp 1-22 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05801-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05801-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05801-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4396734320.pdf"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W1772250503","https://openalex.org/W1792568252","https://openalex.org/W1966116114","https://openalex.org/W1971328698","https://openalex.org/W1986911601","https://openalex.org/W1996647803","https://openalex.org/W2011301426","https://openalex.org/W2039521726","https://openalex.org/W2049446938","https://openalex.org/W2052561043","https://openalex.org/W2062291443","https://openalex.org/W2096192437","https://openalex.org/W2107564978","https://openalex.org/W2107665951","https://openalex.org/W2109363337","https://openalex.org/W2115003883","https://openalex.org/W2118258530","https://openalex.org/W2118527670","https://openalex.org/W2137476312","https://openalex.org/W2137499573","https://openalex.org/W2146512944","https://openalex.org/W2150542002","https://openalex.org/W2153635508","https://openalex.org/W2158994553","https://openalex.org/W2165909549","https://openalex.org/W2169353806","https://openalex.org/W2169456326","https://openalex.org/W2235443461","https://openalex.org/W2299795184","https://openalex.org/W2329659234","https://openalex.org/W2342127666","https://openalex.org/W2475326882","https://openalex.org/W2507892764","https://openalex.org/W2510855144","https://openalex.org/W2574912984","https://openalex.org/W2580635372","https://openalex.org/W2606715885","https://openalex.org/W2607286649","https://openalex.org/W2618851150","https://openalex.org/W2724430069","https://openalex.org/W2761275051","https://openalex.org/W2771169143","https://openalex.org/W2791879663","https://openalex.org/W2795622837","https://openalex.org/W2801452528","https://openalex.org/W2883544453","https://openalex.org/W2889326414","https://openalex.org/W2949679241","https://openalex.org/W2963499961","https://openalex.org/W2964148489","https://openalex.org/W2964849163","https://openalex.org/W3021667312","https://openalex.org/W3039991853","https://openalex.org/W3096831136","https://openalex.org/W3098635759","https://openalex.org/W3115409560","https://openalex.org/W3159875333","https://openalex.org/W3180662109","https://openalex.org/W3200707343","https://openalex.org/W3204597451","https://openalex.org/W3217314753","https://openalex.org/W4226017353","https://openalex.org/W4229977739","https://openalex.org/W4239510810","https://openalex.org/W4254687493","https://openalex.org/W4311007152","https://openalex.org/W4327677955","https://openalex.org/W4381059462","https://openalex.org/W4399639807","https://openalex.org/W6675354045","https://openalex.org/W6681946008"],"related_works":["https://openalex.org/W2989490741","https://openalex.org/W3092506759","https://openalex.org/W2367545121","https://openalex.org/W4248881655","https://openalex.org/W2582603276","https://openalex.org/W4312138714","https://openalex.org/W3149103228","https://openalex.org/W4297777949","https://openalex.org/W4297777938","https://openalex.org/W2379323287"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":3}],"updated_date":"2026-03-13T16:22:10.518609","created_date":"2025-10-10T00:00:00"}
