{"id":"https://openalex.org/W4400360993","doi":"https://doi.org/10.1186/s12859-024-05754-1","title":"Deepvirusclassifier: a deep learning tool for classifying SARS-CoV-2 based on viral subtypes within the coronaviridae family","display_name":"Deepvirusclassifier: a deep learning tool for classifying SARS-CoV-2 based on viral subtypes within the coronaviridae family","publication_year":2024,"publication_date":"2024-07-05","ids":{"openalex":"https://openalex.org/W4400360993","doi":"https://doi.org/10.1186/s12859-024-05754-1","pmid":"https://pubmed.ncbi.nlm.nih.gov/38969970"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05754-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05754-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05754-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05754-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065732571","display_name":"Karolayne S. Azevedo","orcid":null},"institutions":[{"id":"https://openalex.org/I35046152","display_name":"Universidade Federal do Rio Grande do Norte","ror":"https://ror.org/04wn09761","country_code":"BR","type":"education","lineage":["https://openalex.org/I35046152"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Karolayne S. Azevedo","raw_affiliation_strings":["InovAI Lab, nPITI/IMD, Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil"],"affiliations":[{"raw_affiliation_string":"InovAI Lab, nPITI/IMD, Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil","institution_ids":["https://openalex.org/I35046152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113279897","display_name":"Lu\u00edsa C. de Souza","orcid":null},"institutions":[{"id":"https://openalex.org/I35046152","display_name":"Universidade Federal do Rio Grande do Norte","ror":"https://ror.org/04wn09761","country_code":"BR","type":"education","lineage":["https://openalex.org/I35046152"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Lu\u00edsa C. de Souza","raw_affiliation_strings":["InovAI Lab, nPITI/IMD, Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil"],"affiliations":[{"raw_affiliation_string":"InovAI Lab, nPITI/IMD, Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil","institution_ids":["https://openalex.org/I35046152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075193485","display_name":"Maria G. F. Coutinho","orcid":"https://orcid.org/0000-0001-8167-5568"},"institutions":[{"id":"https://openalex.org/I35046152","display_name":"Universidade Federal do Rio Grande do Norte","ror":"https://ror.org/04wn09761","country_code":"BR","type":"education","lineage":["https://openalex.org/I35046152"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Maria G. F. Coutinho","raw_affiliation_strings":["InovAI Lab, nPITI/IMD, Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil"],"affiliations":[{"raw_affiliation_string":"InovAI Lab, nPITI/IMD, Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil","institution_ids":["https://openalex.org/I35046152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007408877","display_name":"Raquel de Melo Barbosa","orcid":"https://orcid.org/0000-0003-3798-5512"},"institutions":[{"id":"https://openalex.org/I35046152","display_name":"Universidade Federal do Rio Grande do Norte","ror":"https://ror.org/04wn09761","country_code":"BR","type":"education","lineage":["https://openalex.org/I35046152"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Raquel de M. Barbosa","raw_affiliation_strings":["Department of Pharmacy and Pharmaceutical Technology, University of Seville, 41012, Seville, Spain. rdemelo@us.es","InovAI Lab, nPITI/IMD, Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil. rdemelo@us.es","InovAI Lab, nPITI/IMD, Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacy and Pharmaceutical Technology, University of Seville, 41012, Seville, Spain. rdemelo@us.es","institution_ids":[]},{"raw_affiliation_string":"InovAI Lab, nPITI/IMD, Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil. rdemelo@us.es","institution_ids":[]},{"raw_affiliation_string":"InovAI Lab, nPITI/IMD, Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil","institution_ids":["https://openalex.org/I35046152"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113279898","display_name":"Marcelo A. C. Fernandes","orcid":null},"institutions":[{"id":"https://openalex.org/I35046152","display_name":"Universidade Federal do Rio Grande do Norte","ror":"https://ror.org/04wn09761","country_code":"BR","type":"education","lineage":["https://openalex.org/I35046152"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Marcelo A. C. Fernandes","raw_affiliation_strings":["Bioinformatics Multidisciplinary Environment (BioME), Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil. mfernandes@dca.ufrn.br","Department of Computer Engineering and Automation (DCA), Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil. mfernandes@dca.ufrn.br","InovAI Lab, nPITI/IMD, Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil. mfernandes@dca.ufrn.br","Bioinformatics Multidisciplinary Environment (BioME), Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Multidisciplinary Environment (BioME), Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil. mfernandes@dca.ufrn.br","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Engineering and Automation (DCA), Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil. mfernandes@dca.ufrn.br","institution_ids":[]},{"raw_affiliation_string":"InovAI Lab, nPITI/IMD, Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil. mfernandes@dca.ufrn.br","institution_ids":[]},{"raw_affiliation_string":"Bioinformatics Multidisciplinary Environment (BioME), Federal University of Rio Grande do Norte, Natal, RN, 59078-970, Brazil","institution_ids":["https://openalex.org/I35046152"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5113279898"],"corresponding_institution_ids":["https://openalex.org/I35046152"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.9777,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.85953053,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"25","issue":"1","first_page":"231","last_page":"231"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coronaviridae","display_name":"Coronaviridae","score":0.8671549558639526},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6581284999847412},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5866972208023071},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5311407446861267},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5069251656532288},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.49912500381469727},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.45518890023231506},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.4448372423648834},{"id":"https://openalex.org/keywords/coronavirus","display_name":"Coronavirus","score":0.42972850799560547},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4263358414173126},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30148476362228394},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.28584909439086914},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16859650611877441},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16176742315292358},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12520471215248108}],"concepts":[{"id":"https://openalex.org/C2776844884","wikidata":"https://www.wikidata.org/wiki/Q1134583","display_name":"Coronaviridae","level":5,"score":0.8671549558639526},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6581284999847412},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5866972208023071},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5311407446861267},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5069251656532288},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.49912500381469727},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.45518890023231506},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.4448372423648834},{"id":"https://openalex.org/C2777648638","wikidata":"https://www.wikidata.org/wiki/Q57751738","display_name":"Coronavirus","level":5,"score":0.42972850799560547},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4263358414173126},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30148476362228394},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.28584909439086914},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16859650611877441},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16176742315292358},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12520471215248108},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D003332","descriptor_name":"Coronaviridae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D003332","descriptor_name":"Coronaviridae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D003332","descriptor_name":"Coronaviridae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D003332","descriptor_name":"Coronaviridae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D003332","descriptor_name":"Coronaviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003332","descriptor_name":"Coronaviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003332","descriptor_name":"Coronaviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003332","descriptor_name":"Coronaviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-024-05754-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05754-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05754-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38969970","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38969970","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11225326","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11225326","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11225326/pdf/12859_2024_Article_5754.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:9ecc1b55e0d34e44b1d1f77c57e3f103","is_oa":true,"landing_page_url":"https://doaj.org/article/9ecc1b55e0d34e44b1d1f77c57e3f103","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 25, Iss 1, Pp 1-21 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05754-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05754-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05754-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.44999998807907104}],"awards":[{"id":"https://openalex.org/G1429890386","display_name":null,"funder_award_id":"(CNPq","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3331681876","display_name":null,"funder_award_id":"CAPES","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3883789297","display_name":null,"funder_award_id":"Code 00","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G3938906640","display_name":null,"funder_award_id":"(CAPES)","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G5079005330","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G5139334624","display_name":null,"funder_award_id":"Coordena\u00e7\u00e3o","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G5696276328","display_name":null,"funder_award_id":"Finance","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G8837013128","display_name":null,"funder_award_id":"Code 0","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G963174003","display_name":null,"funder_award_id":"de Aperfei\u00e7","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"}],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4400360993.pdf"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1123205372","https://openalex.org/W2029195137","https://openalex.org/W2106882534","https://openalex.org/W2124351063","https://openalex.org/W2158714788","https://openalex.org/W2605595174","https://openalex.org/W2732139758","https://openalex.org/W2761430568","https://openalex.org/W2784010265","https://openalex.org/W2801905545","https://openalex.org/W2901218091","https://openalex.org/W2935703330","https://openalex.org/W2943381976","https://openalex.org/W2949759087","https://openalex.org/W2950237782","https://openalex.org/W2953532875","https://openalex.org/W2973098646","https://openalex.org/W3003110834","https://openalex.org/W3013277995","https://openalex.org/W3018037557","https://openalex.org/W3019119825","https://openalex.org/W3037163353","https://openalex.org/W3044763094","https://openalex.org/W3085954833","https://openalex.org/W3125038622","https://openalex.org/W3152659908","https://openalex.org/W3185619636","https://openalex.org/W3204652406","https://openalex.org/W4206182892","https://openalex.org/W4206532887","https://openalex.org/W4312067038","https://openalex.org/W4323971686","https://openalex.org/W4328007445"],"related_works":["https://openalex.org/W3217468344","https://openalex.org/W3205206809","https://openalex.org/W3160595510","https://openalex.org/W4226493464","https://openalex.org/W4312417841","https://openalex.org/W2044069055","https://openalex.org/W2029489594","https://openalex.org/W3193565141","https://openalex.org/W3109411001","https://openalex.org/W3133861977"],"abstract_inverted_index":{"DeepVirusClassifier":[0],"is":[1],"a":[2],"powerful":[3],"tool":[4],"for":[5],"accurately":[6],"classifying":[7],"viral":[8,53,59,76],"sequences,":[9],"specifically":[10],"focusing":[11],"on":[12],"SARS-CoV-2":[13],"and":[14,31,49,55,71],"other":[15],"subtypes":[16],"within":[17],"the":[18,40,43],"Coronaviridae":[19],"family.":[20],"The":[21],"superiority":[22],"of":[23,74],"our":[24,64],"model":[25,65],"becomes":[26,61],"evident":[27],"through":[28],"rigorous":[29],"evaluation":[30],"comparison":[32],"with":[33],"existing":[34],"methods.":[35],"Introducing":[36],"artificial":[37],"mutations":[38],"into":[39],"sequences":[41],"demonstrates":[42],"tool's":[44],"ability":[45],"to":[46,52],"identify":[47],"variations":[48],"significantly":[50],"contributes":[51],"classification":[54],"genomic":[56],"research.":[57],"As":[58],"surveillance":[60],"increasingly":[62],"critical,":[63],"holds":[66],"promise":[67],"in":[68],"aiding":[69],"rapid":[70],"accurate":[72],"identification":[73],"emerging":[75],"strains.":[77]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4}],"updated_date":"2026-03-22T08:09:32.410652","created_date":"2025-10-10T00:00:00"}