{"id":"https://openalex.org/W4392864582","doi":"https://doi.org/10.1186/s12859-024-05732-7","title":"NeuronBridge: an intuitive web application for neuronal morphology search across large data sets","display_name":"NeuronBridge: an intuitive web application for neuronal morphology search across large data sets","publication_year":2024,"publication_date":"2024-03-15","ids":{"openalex":"https://openalex.org/W4392864582","doi":"https://doi.org/10.1186/s12859-024-05732-7","pmid":"https://pubmed.ncbi.nlm.nih.gov/38491365"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05732-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05732-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05732-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05732-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084167899","display_name":"Jody Clements","orcid":"https://orcid.org/0000-0003-3932-8188"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I195573530","display_name":"Janelia Research Campus","ror":"https://ror.org/013sk6x84","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jody Clements","raw_affiliation_strings":["Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA","institution_ids":["https://openalex.org/I195573530","https://openalex.org/I1344073410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073600517","display_name":"Cristian Goina","orcid":"https://orcid.org/0000-0003-2835-7602"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I195573530","display_name":"Janelia Research Campus","ror":"https://ror.org/013sk6x84","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cristian Goina","raw_affiliation_strings":["Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA","institution_ids":["https://openalex.org/I195573530","https://openalex.org/I1344073410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046545760","display_name":"Philip M. Hubbard","orcid":"https://orcid.org/0000-0002-6746-5035"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I195573530","display_name":"Janelia Research Campus","ror":"https://ror.org/013sk6x84","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip M. Hubbard","raw_affiliation_strings":["Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA","institution_ids":["https://openalex.org/I195573530","https://openalex.org/I1344073410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007678488","display_name":"Takashi Kawase","orcid":"https://orcid.org/0000-0003-2991-5338"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I195573530","display_name":"Janelia Research Campus","ror":"https://ror.org/013sk6x84","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Takashi Kawase","raw_affiliation_strings":["Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA","institution_ids":["https://openalex.org/I195573530","https://openalex.org/I1344073410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021828966","display_name":"Donald J. Olbris","orcid":"https://orcid.org/0009-0008-8581-0550"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I195573530","display_name":"Janelia Research Campus","ror":"https://ror.org/013sk6x84","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Donald J. Olbris","raw_affiliation_strings":["Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA","institution_ids":["https://openalex.org/I195573530","https://openalex.org/I1344073410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075262449","display_name":"Hideo Otsuna","orcid":"https://orcid.org/0000-0002-2107-8881"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I195573530","display_name":"Janelia Research Campus","ror":"https://ror.org/013sk6x84","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hideo Otsuna","raw_affiliation_strings":["Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA","institution_ids":["https://openalex.org/I195573530","https://openalex.org/I1344073410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078922751","display_name":"Robert Svirskas","orcid":"https://orcid.org/0000-0001-8374-6008"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I195573530","display_name":"Janelia Research Campus","ror":"https://ror.org/013sk6x84","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Svirskas","raw_affiliation_strings":["Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA","institution_ids":["https://openalex.org/I195573530","https://openalex.org/I1344073410"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048962179","display_name":"Konrad Rokicki","orcid":"https://orcid.org/0000-0002-2799-9833"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I195573530","display_name":"Janelia Research Campus","ror":"https://ror.org/013sk6x84","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Konrad Rokicki","raw_affiliation_strings":["Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA. rokickik@janelia.hhmi.org","Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA. rokickik@janelia.hhmi.org","institution_ids":["https://openalex.org/I195573530"]},{"raw_affiliation_string":"Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA","institution_ids":["https://openalex.org/I195573530","https://openalex.org/I1344073410"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5084167899"],"corresponding_institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I195573530"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":15.2163,"has_fulltext":true,"cited_by_count":68,"citation_normalized_percentile":{"value":0.99550151,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"25","issue":"1","first_page":"114","last_page":"114"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10423","display_name":"Neurobiology and Insect Physiology Research","score":0.46000000834465027,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10423","display_name":"Neurobiology and Insect Physiology Research","score":0.46000000834465027,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.17389999330043793,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.16750000417232513,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/connectomics","display_name":"Connectomics","score":0.8631460666656494},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7517715096473694},{"id":"https://openalex.org/keywords/connectome","display_name":"Connectome","score":0.6556209325790405},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6427701711654663},{"id":"https://openalex.org/keywords/neuroinformatics","display_name":"Neuroinformatics","score":0.5631961226463318},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5272043347358704},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4903690814971924},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.43859100341796875},{"id":"https://openalex.org/keywords/massively-parallel","display_name":"Massively parallel","score":0.41120094060897827},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.27475273609161377},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26501578092575073},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.22935697436332703},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.16321086883544922}],"concepts":[{"id":"https://openalex.org/C2779097318","wikidata":"https://www.wikidata.org/wiki/Q2993446","display_name":"Connectomics","level":4,"score":0.8631460666656494},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7517715096473694},{"id":"https://openalex.org/C45715564","wikidata":"https://www.wikidata.org/wiki/Q1292103","display_name":"Connectome","level":3,"score":0.6556209325790405},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6427701711654663},{"id":"https://openalex.org/C205427263","wikidata":"https://www.wikidata.org/wiki/Q1931480","display_name":"Neuroinformatics","level":2,"score":0.5631961226463318},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5272043347358704},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4903690814971924},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.43859100341796875},{"id":"https://openalex.org/C190475519","wikidata":"https://www.wikidata.org/wiki/Q544384","display_name":"Massively parallel","level":2,"score":0.41120094060897827},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.27475273609161377},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26501578092575073},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.22935697436332703},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.16321086883544922},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C3018011982","wikidata":"https://www.wikidata.org/wiki/Q7316120","display_name":"Functional connectivity","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008854","descriptor_name":"Microscopy, Electron","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008854","descriptor_name":"Microscopy, Electron","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008854","descriptor_name":"Microscopy, Electron","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008854","descriptor_name":"Microscopy, Electron","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063132","descriptor_name":"Connectome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063132","descriptor_name":"Connectome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063132","descriptor_name":"Connectome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063132","descriptor_name":"Connectome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-024-05732-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05732-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05732-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38491365","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38491365","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10943809","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10943809","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10943809/pdf/12859_2024_Article_5732.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:2384400103194c7c8c145bb2d3811ec8","is_oa":false,"landing_page_url":"https://doaj.org/article/2384400103194c7c8c145bb2d3811ec8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 25, Iss 1, Pp 1-25 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05732-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05732-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05732-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.46000000834465027}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320310598","display_name":"Amazon Web Services","ror":"https://ror.org/04mv4n011"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4392864582.pdf"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1491075702","https://openalex.org/W1967800066","https://openalex.org/W1978157456","https://openalex.org/W1989621138","https://openalex.org/W2047951563","https://openalex.org/W2092098765","https://openalex.org/W2110643873","https://openalex.org/W2113540611","https://openalex.org/W2117794907","https://openalex.org/W2136762844","https://openalex.org/W2137600012","https://openalex.org/W2137789542","https://openalex.org/W2167279371","https://openalex.org/W2488060953","https://openalex.org/W2566875547","https://openalex.org/W2734838926","https://openalex.org/W2780788446","https://openalex.org/W2800199811","https://openalex.org/W2885788335","https://openalex.org/W2946807361","https://openalex.org/W2949808130","https://openalex.org/W2951976236","https://openalex.org/W2999498932","https://openalex.org/W3016007634","https://openalex.org/W3051574499","https://openalex.org/W3095201035","https://openalex.org/W3102686699","https://openalex.org/W3106447471","https://openalex.org/W3108286875","https://openalex.org/W3108685405","https://openalex.org/W3114097778","https://openalex.org/W3120038054","https://openalex.org/W3124230387","https://openalex.org/W3130492894","https://openalex.org/W3165096146","https://openalex.org/W3179852190","https://openalex.org/W3184804859","https://openalex.org/W3196518368","https://openalex.org/W4210525734","https://openalex.org/W4210832757","https://openalex.org/W4211114670","https://openalex.org/W4225330060","https://openalex.org/W4286208813","https://openalex.org/W4321595559","https://openalex.org/W4379522557","https://openalex.org/W4382684379","https://openalex.org/W4390708002","https://openalex.org/W6893987346"],"related_works":["https://openalex.org/W3210800206","https://openalex.org/W1744057168","https://openalex.org/W2124698428","https://openalex.org/W2091472861","https://openalex.org/W2945607120","https://openalex.org/W2086448982","https://openalex.org/W112425480","https://openalex.org/W2550381304","https://openalex.org/W2946138627","https://openalex.org/W3112117434"],"abstract_inverted_index":{"BACKGROUND:":[0],"Neuroscience":[1],"research":[2,201],"in":[3,20,56,91,116,198],"Drosophila":[4,200],"is":[5,114,204],"benefiting":[6],"from":[7],"large-scale":[8],"connectomics":[9],"efforts":[10],"using":[11,65,134,160],"electron":[12],"microscopy":[13,68],"(EM)":[14],"to":[15,36],"reveal":[16],"all":[17],"the":[18,71,110,165,170,199,212,231],"neurons":[19,59,74,128,158],"a":[21,33,79,87,96,103,142,195,234],"brain":[22],"and":[23,63,120,147,167,186,203,221,227,229],"their":[24],"connections.":[25],"To":[26],"exploit":[27],"this":[28],"knowledge":[29],"base,":[30],"researchers":[31,210],"relate":[32],"connectome's":[34],"structure":[35],"neuronal":[37],"function,":[38],"often":[39],"by":[40,206],"studying":[41],"individual":[42],"neuron":[43,89,111],"cell":[44],"types.":[45],"Vast":[46],"libraries":[47],"of":[48,58,73,105,112,157,169,208],"fly":[49,80],"driver":[50,106],"lines":[51,107],"expressing":[52],"fluorescent":[53],"reporter":[54],"genes":[55],"sets":[57,132,156,224],"have":[60],"been":[61],"created":[62],"imaged":[64,133,159],"confocal":[66],"light":[67],"(LM),":[69],"enabling":[70],"targeting":[72],"for":[75,82,145,225],"experimentation.":[76],"However,":[77],"creating":[78],"line":[81],"driving":[83],"gene":[84],"expression":[85],"within":[86],"single":[88],"found":[90],"an":[92],"EM":[93],"connectome":[94],"remains":[95],"challenge,":[97],"as":[98,233],"it":[99],"typically":[100],"requires":[101],"identifying":[102],"pair":[104],"where":[108],"only":[109],"interest":[113],"expressed":[115],"both.":[117],"This":[118],"task":[119],"other":[121],"emerging":[122],"scientific":[123],"workflows":[124],"require":[125],"finding":[126,149],"similar":[127],"across":[129],"large":[130,154],"data":[131,155,181,223],"different":[135,161],"modalities.":[136,162],"RESULTS:":[137],"Here,":[138],"we":[139],"present":[140],"NeuronBridge,":[141],"web":[143],"application":[144,232],"easily":[146],"rapidly":[148],"putative":[150],"morphological":[151],"matches":[152],"between":[153],"We":[163,214],"describe":[164],"functionality":[166],"construction":[168],"NeuronBridge":[171,193],"service,":[172],"including":[173],"its":[174],"user-friendly":[175],"graphical":[176],"user":[177],"interface":[178],"(GUI),":[179],"extensible":[180],"model,":[182],"serverless":[183],"cloud":[184],"architecture,":[185],"massively":[187],"parallel":[188],"image":[189],"search":[190],"engine.":[191],"CONCLUSIONS:":[192],"fills":[194],"critical":[196],"gap":[197],"workflow":[202],"used":[205],"hundreds":[207],"neuroscience":[209],"around":[211],"world.":[213],"offer":[215],"our":[216],"software":[217],"code,":[218],"open":[219],"APIs,":[220],"processed":[222],"integration":[226],"reuse,":[228],"provide":[230],"service":[235],"at":[236],"http://neuronbridge.janelia.org":[237],".":[238]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":34},{"year":2024,"cited_by_count":19},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-29T09:21:14.243279","created_date":"2025-10-10T00:00:00"}
