{"id":"https://openalex.org/W4392818926","doi":"https://doi.org/10.1186/s12859-024-05730-9","title":"MetaTron: advancing biomedical annotation empowering relation annotation and collaboration","display_name":"MetaTron: advancing biomedical annotation empowering relation annotation and collaboration","publication_year":2024,"publication_date":"2024-03-14","ids":{"openalex":"https://openalex.org/W4392818926","doi":"https://doi.org/10.1186/s12859-024-05730-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/38486137"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05730-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05730-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05730-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05730-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021927336","display_name":"Ornella Irrera","orcid":"https://orcid.org/0000-0003-2284-5699"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Ornella Irrera","raw_affiliation_strings":["Department of Information Engineering, University of Padova, Padua, Italy. ornella.irrera@unipd.it","Department of Information Engineering, University of Padova, Padua, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Engineering, University of Padova, Padua, Italy. ornella.irrera@unipd.it","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Department of Information Engineering, University of Padova, Padua, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003820981","display_name":"Stefano Marchesin","orcid":"https://orcid.org/0000-0003-0362-5893"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Stefano Marchesin","raw_affiliation_strings":["Department of Information Engineering, University of Padova, Padua, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Engineering, University of Padova, Padua, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078254809","display_name":"Gianmaria Silvello","orcid":"https://orcid.org/0000-0003-4970-4554"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gianmaria Silvello","raw_affiliation_strings":["Department of Information Engineering, University of Padova, Padua, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Engineering, University of Padova, Padua, Italy","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5021927336"],"corresponding_institution_ids":["https://openalex.org/I138689650"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7465,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.68376826,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"25","issue":"1","first_page":"112","last_page":"112"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7857999801635742,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7857999801635742,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.09700000286102295,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.02019999921321869,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.9180334806442261},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8355664014816284},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6155065894126892},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.5896178483963013},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5730478167533875},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.488796204328537},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.46005791425704956},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.41387060284614563},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33703476190567017},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21553048491477966},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.19838276505470276}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.9180334806442261},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8355664014816284},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6155065894126892},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.5896178483963013},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5730478167533875},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.488796204328537},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.46005791425704956},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.41387060284614563},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33703476190567017},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21553048491477966},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.19838276505470276},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011209","descriptor_name":"Power, Psychological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011209","descriptor_name":"Power, Psychological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011209","descriptor_name":"Power, Psychological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-024-05730-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05730-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05730-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38486137","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38486137","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10941452","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10941452","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10941452/pdf/12859_2024_Article_5730.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.research.unipd.it:11577/3514385","is_oa":true,"landing_page_url":"https://hdl.handle.net/11577/3514385","pdf_url":"https://www.research.unipd.it/bitstream/11577/3514385/1/s12859-024-05730-9.pdf","source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:44489393b61e4fb0bc37242b8ff343c0","is_oa":true,"landing_page_url":"https://doaj.org/article/44489393b61e4fb0bc37242b8ff343c0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 25, Iss 1, Pp 1-41 (2024)","raw_type":"article"},{"id":"pmh:oai:www.research.unipd.it:11577/3592400","is_oa":true,"landing_page_url":"https://hdl.handle.net/11577/3592400","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05730-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05730-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05730-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1890001401","display_name":null,"funder_award_id":"101137074","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G2049324869","display_name":null,"funder_award_id":"825292","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G265104915","display_name":null,"funder_award_id":"EC H2020","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G4937468798","display_name":null,"funder_award_id":"H2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5415030073","display_name":null,"funder_award_id":"101137074","funder_id":"https://openalex.org/F4320334322","funder_display_name":"HORIZON EUROPE Framework Programme"},{"id":"https://openalex.org/G5644912080","display_name":null,"funder_award_id":"101017452","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G6207606345","display_name":"HetERogeneous sEmantic Data integratIon for the guT-bRain interplaY","funder_award_id":"101137074","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6731515545","display_name":"OpenAIRE-Nexus Scholarly Communication Services for EOSC users","funder_award_id":"101017452","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321966","display_name":"Universit\u00e0 degli Studi di Padova","ror":"https://ror.org/00240q980"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334322","display_name":"HORIZON EUROPE Framework Programme","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4392818926.pdf"},"referenced_works_count":83,"referenced_works":["https://openalex.org/W90362830","https://openalex.org/W174427690","https://openalex.org/W1603719052","https://openalex.org/W1604644367","https://openalex.org/W1964670939","https://openalex.org/W1966976587","https://openalex.org/W1975879668","https://openalex.org/W2023839984","https://openalex.org/W2028007965","https://openalex.org/W2032069669","https://openalex.org/W2039612385","https://openalex.org/W2040298461","https://openalex.org/W2052217781","https://openalex.org/W2082302018","https://openalex.org/W2096951189","https://openalex.org/W2107580398","https://openalex.org/W2123556395","https://openalex.org/W2127546476","https://openalex.org/W2128392365","https://openalex.org/W2141593186","https://openalex.org/W2145870108","https://openalex.org/W2149369282","https://openalex.org/W2149803936","https://openalex.org/W2156010380","https://openalex.org/W2156418292","https://openalex.org/W2158419693","https://openalex.org/W2159583324","https://openalex.org/W2163025055","https://openalex.org/W2163107094","https://openalex.org/W2168041406","https://openalex.org/W2168905447","https://openalex.org/W2169099542","https://openalex.org/W2251135946","https://openalex.org/W2252174377","https://openalex.org/W2284907005","https://openalex.org/W2345195116","https://openalex.org/W2346452181","https://openalex.org/W2396881363","https://openalex.org/W2517194566","https://openalex.org/W2582146834","https://openalex.org/W2602583424","https://openalex.org/W2760618582","https://openalex.org/W2773309042","https://openalex.org/W2801930304","https://openalex.org/W2803614960","https://openalex.org/W2901387348","https://openalex.org/W2912971066","https://openalex.org/W2913593516","https://openalex.org/W2933436187","https://openalex.org/W2941179688","https://openalex.org/W2946690328","https://openalex.org/W2963740308","https://openalex.org/W2963826396","https://openalex.org/W2970771982","https://openalex.org/W2996500226","https://openalex.org/W3023249475","https://openalex.org/W3028004046","https://openalex.org/W3032553678","https://openalex.org/W3033077186","https://openalex.org/W3044410371","https://openalex.org/W3045064228","https://openalex.org/W3103842844","https://openalex.org/W3111301126","https://openalex.org/W3131882755","https://openalex.org/W3134763567","https://openalex.org/W3179277507","https://openalex.org/W3179500067","https://openalex.org/W3183397339","https://openalex.org/W3212013320","https://openalex.org/W4200196667","https://openalex.org/W4206025858","https://openalex.org/W4206480062","https://openalex.org/W4220950432","https://openalex.org/W4221128994","https://openalex.org/W4226178464","https://openalex.org/W4237381349","https://openalex.org/W4294214983","https://openalex.org/W4311903220","https://openalex.org/W4312220150","https://openalex.org/W4384643589","https://openalex.org/W4387078498","https://openalex.org/W6600493712","https://openalex.org/W6603871377"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2251519152"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,193],"constant":[2],"growth":[3],"of":[4,129,150,164,181,185,191,215,227],"biomedical":[5,104,222],"data":[6,105],"is":[7,33,62,94],"accompanied":[8],"by":[9,70,134],"the":[10,82,127,201,206,216,221,225],"need":[11],"for":[12,22,43,49],"new":[13],"methodologies":[14],"to":[15,102,144,175,187],"effectively":[16],"and":[17,24,46,56,64,73,85,97,107,113,159,168,183,204,229,247,262],"efficiently":[18],"extract":[19],"machine-readable":[20],"knowledge":[21],"training":[23],"testing":[25],"purposes.":[26],"A":[27,170],"crucial":[28],"aspect":[29],"in":[30,81,179,234],"this":[31],"regard":[32],"creating":[34],"large,":[35],"often":[36,132],"manually":[37],"or":[38],"semi-manually,":[39],"annotated":[40,87],"corpora":[41,88],"vital":[42],"developing":[44],"effective":[45],"efficient":[47],"methods":[48],"tasks":[50],"like":[51],"relation":[52,124],"extraction,":[53],"topic":[54],"recognition,":[55],"entity":[57],"linking.":[58],"However,":[59],"manual":[60,151],"annotation":[61,83,100,125,136,152,218,226],"expensive":[63],"time-consuming":[65],"especially":[66],"if":[67],"not":[68],"assisted":[69],"interactive,":[71],"intuitive,":[72],"collaborative":[74],"computer-aided":[75],"tools.":[76,137],"To":[77,249],"support":[78,128],"healthcare":[79],"experts":[80],"process":[84],"foster":[86],"creation,":[89],"we":[90,254],"present":[91],"MetaTron.":[92],"MetaTron":[93,122,146,177,197,210,256],"an":[95,259],"open-source":[96],"free-to-use":[98],"web-based":[99],"tool":[101],"annotate":[103,188],"interactively":[106],"collaboratively;":[108],"it":[109],"supports":[110],"both":[111,257],"mention-level":[112],"document-level":[114],"annotations":[115],"also":[116],"integrating":[117],"automatic":[118],"built-in":[119],"predictions.":[120],"Moreover,":[121],"enables":[123],"with":[126,147,232],"ontologies,":[130],"functionalities":[131],"overlooked":[133],"off-the-shelf":[135],"RESULTS:":[138],"We":[139],"conducted":[140],"a":[141,148,189,264],"qualitative":[142],"analysis":[143],"compare":[145],"set":[149,190],"tools":[153,219],"including":[154],"TeamTat,":[155],"INCEpTION,":[156],"LightTag,":[157],"MedTAG,":[158],"brat,":[160],"on":[161],"three":[162],"sets":[163],"criteria:":[165],"technical,":[166],"data,":[167],"functional.":[169],"quantitative":[171],"evaluation":[172],"allowed":[173],"us":[174],"assess":[176],"performances":[178],"terms":[180],"time":[182],"number":[184],"clicks":[186],"documents.":[192],"results":[194],"indicated":[195],"that":[196],"fulfills":[198],"almost":[199],"all":[200],"selected":[202],"criteria":[203],"achieves":[205],"best":[207],"performances.":[208],"CONCLUSIONS:":[209],"stands":[211],"out":[212],"as":[213,238,240,258,263],"one":[214],"few":[217],"targeting":[220],"domain":[223],"supporting":[224],"relations,":[228],"fully":[230],"customizable":[231],"documents":[233],"several":[235],"formats-PDF":[236],"included,":[237],"well":[239],"abstracts":[241],"retrieved":[242],"from":[243],"PubMed,":[244],"Semantic":[245],"Scholar,":[246],"OpenAIRE.":[248],"meet":[250],"any":[251],"user":[252],"need,":[253],"released":[255],"online":[260],"instance":[261],"Docker":[265],"image":[266],"locally":[267],"deployable.":[268]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
