{"id":"https://openalex.org/W4392378587","doi":"https://doi.org/10.1186/s12859-024-05722-9","title":"BSXplorer: analytical framework for exploratory analysis of BS-seq data","display_name":"BSXplorer: analytical framework for exploratory analysis of BS-seq data","publication_year":2024,"publication_date":"2024-03-04","ids":{"openalex":"https://openalex.org/W4392378587","doi":"https://doi.org/10.1186/s12859-024-05722-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/38438881"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05722-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05722-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05722-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05722-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5094049612","display_name":"Konstantin Yuditskiy","orcid":null},"institutions":[{"id":"https://openalex.org/I172901346","display_name":"St Petersburg University","ror":"https://ror.org/023znxa73","country_code":"RU","type":"education","lineage":["https://openalex.org/I172901346"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Konstantin Yuditskiy","raw_affiliation_strings":["Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia, 199004"],"affiliations":[{"raw_affiliation_string":"Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia, 199004","institution_ids":["https://openalex.org/I172901346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039225077","display_name":"Igor Bezdvornykh","orcid":null},"institutions":[{"id":"https://openalex.org/I172901346","display_name":"St Petersburg University","ror":"https://ror.org/023znxa73","country_code":"RU","type":"education","lineage":["https://openalex.org/I172901346"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Igor Bezdvornykh","raw_affiliation_strings":["Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia, 199004"],"affiliations":[{"raw_affiliation_string":"Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia, 199004","institution_ids":["https://openalex.org/I172901346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049335860","display_name":"\u0410. \u0412. \u041a\u0430\u0437\u0430\u043d\u0446\u0435\u0432\u0430","orcid":"https://orcid.org/0000-0002-3744-8058"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anastasiya Kazantseva","raw_affiliation_strings":["Laboratory of Neurocognitive Genomics, Department of Genetics and Fundamental Medicine, Ufa University of Science and Technology, Ufa, Russia, 450076"],"affiliations":[{"raw_affiliation_string":"Laboratory of Neurocognitive Genomics, Department of Genetics and Fundamental Medicine, Ufa University of Science and Technology, Ufa, Russia, 450076","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083899845","display_name":"Alexander Kanapin","orcid":"https://orcid.org/0000-0001-9802-5297"},"institutions":[{"id":"https://openalex.org/I172901346","display_name":"St Petersburg University","ror":"https://ror.org/023znxa73","country_code":"RU","type":"education","lineage":["https://openalex.org/I172901346"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Alexander Kanapin","raw_affiliation_strings":["Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia, 199004"],"affiliations":[{"raw_affiliation_string":"Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia, 199004","institution_ids":["https://openalex.org/I172901346"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076472537","display_name":"Anastasia Samsonova","orcid":"https://orcid.org/0000-0002-9353-9173"},"institutions":[{"id":"https://openalex.org/I172901346","display_name":"St Petersburg University","ror":"https://ror.org/023znxa73","country_code":"RU","type":"education","lineage":["https://openalex.org/I172901346"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Anastasia Samsonova","raw_affiliation_strings":["Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia, 199004. a.samsonova@spbu.ru","Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia, 199004"],"affiliations":[{"raw_affiliation_string":"Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia, 199004. a.samsonova@spbu.ru","institution_ids":["https://openalex.org/I172901346"]},{"raw_affiliation_string":"Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia, 199004","institution_ids":["https://openalex.org/I172901346"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5094049612"],"corresponding_institution_ids":["https://openalex.org/I172901346"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.9369,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.72584725,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"25","issue":"1","first_page":"96","last_page":"96"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.7662985920906067},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.7339934706687927},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6534595489501953},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6158721446990967},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5279126763343811},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.5098535418510437},{"id":"https://openalex.org/keywords/bisulfite-sequencing","display_name":"Bisulfite sequencing","score":0.5034381747245789},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.43476736545562744},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.42562413215637207},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42454060912132263},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3209322988986969},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.279134064912796},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2442450225353241},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.11656931042671204}],"concepts":[{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.7662985920906067},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.7339934706687927},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6534595489501953},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6158721446990967},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5279126763343811},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.5098535418510437},{"id":"https://openalex.org/C189235521","wikidata":"https://www.wikidata.org/wiki/Q4087270","display_name":"Bisulfite sequencing","level":5,"score":0.5034381747245789},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.43476736545562744},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.42562413215637207},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42454060912132263},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3209322988986969},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.279134064912796},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2442450225353241},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.11656931042671204}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-024-05722-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05722-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05722-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38438881","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38438881","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10913661","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10913661","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10913661/pdf/12859_2024_Article_5722.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:c686a72ebfe34d338196a020d3e7eade","is_oa":true,"landing_page_url":"https://doaj.org/article/c686a72ebfe34d338196a020d3e7eade","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 25, Iss 1, Pp 1-11 (2024)","raw_type":"article"},{"id":"doi:10.5281/zenodo.10702272","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10702272","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05722-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-024-05722-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-024-05722-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6100000143051147,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G7624424695","display_name":null,"funder_award_id":"23-14-00134","funder_id":"https://openalex.org/F4320324099","funder_display_name":"Russian Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320324099","display_name":"Russian Science Foundation","ror":"https://ror.org/03y2gwe85"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4392378587.pdf"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1963590871","https://openalex.org/W2024848067","https://openalex.org/W2051465150","https://openalex.org/W2069796345","https://openalex.org/W2074746593","https://openalex.org/W2106889224","https://openalex.org/W2109606373","https://openalex.org/W2116381106","https://openalex.org/W2123921804","https://openalex.org/W2131374955","https://openalex.org/W2139367243","https://openalex.org/W2149206894","https://openalex.org/W2150194502","https://openalex.org/W2150936392","https://openalex.org/W2153975081","https://openalex.org/W2156247618","https://openalex.org/W2186978757","https://openalex.org/W2305364952","https://openalex.org/W2341539131","https://openalex.org/W2461153930","https://openalex.org/W2765869110","https://openalex.org/W2798933487","https://openalex.org/W2804344327","https://openalex.org/W2922281162","https://openalex.org/W2938759794","https://openalex.org/W2944545583","https://openalex.org/W2950103832","https://openalex.org/W2965664210","https://openalex.org/W2968658941","https://openalex.org/W3007462267","https://openalex.org/W3030675781","https://openalex.org/W3038627990","https://openalex.org/W3092457640","https://openalex.org/W3118316970","https://openalex.org/W3158635048","https://openalex.org/W3201372699","https://openalex.org/W3211387501","https://openalex.org/W3212291620","https://openalex.org/W4220705166","https://openalex.org/W4221087404","https://openalex.org/W4283317079","https://openalex.org/W4296448992","https://openalex.org/W4313648035","https://openalex.org/W4316467946","https://openalex.org/W4386574421","https://openalex.org/W4392378587"],"related_works":["https://openalex.org/W2214376880","https://openalex.org/W3212149434","https://openalex.org/W2073893804","https://openalex.org/W2291484187","https://openalex.org/W2902329290","https://openalex.org/W2139872319","https://openalex.org/W2052355316","https://openalex.org/W2046964473","https://openalex.org/W2107880877","https://openalex.org/W2151182744"],"abstract_inverted_index":{"BSXplorer":[0],"facilitates":[1],"efficient":[2],"methylation":[3],"data":[4],"mining,":[5],"contrasting":[6],"and":[7],"visualization,":[8],"making":[9],"it":[10],"an":[11],"easy-to-use":[12],"package":[13],"that":[14],"is":[15],"highly":[16],"useful":[17],"for":[18],"epigenetic":[19],"research.":[20]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2}],"updated_date":"2026-03-28T08:17:26.163206","created_date":"2025-10-10T00:00:00"}
