{"id":"https://openalex.org/W4389428438","doi":"https://doi.org/10.1186/s12859-023-05590-9","title":"SingleScan: a comprehensive resource for single-cell sequencing data processing and mining","display_name":"SingleScan: a comprehensive resource for single-cell sequencing data processing and mining","publication_year":2023,"publication_date":"2023-12-07","ids":{"openalex":"https://openalex.org/W4389428438","doi":"https://doi.org/10.1186/s12859-023-05590-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/38062357"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05590-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05590-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05590-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05590-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5115587855","display_name":"Kun Wang","orcid":"https://orcid.org/0009-0005-4052-6909"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kun Wang","raw_affiliation_strings":["Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100320836","display_name":"Xiao Zhang","orcid":"https://orcid.org/0000-0001-5891-8912"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Zhang","raw_affiliation_strings":["Chinese Academy of Sciences Sichuan Translational Medicine Research Hospital, Chengdu, 610072, China","Department of Breast Surgery, Sichuan Provincial People's Hospital, University of Electronic Science and Technology of China, Chengdu, 611731, China","Department of Breast Surgery, Sichuan Provincial People\u2019s Hospital, University of Electronic Science and Technology of China, Chengdu, China","Chinese Academy of Sciences Sichuan Translational Medicine Research Hospital, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Chinese Academy of Sciences Sichuan Translational Medicine Research Hospital, Chengdu, 610072, China","institution_ids":[]},{"raw_affiliation_string":"Department of Breast Surgery, Sichuan Provincial People's Hospital, University of Electronic Science and Technology of China, Chengdu, 611731, China","institution_ids":[]},{"raw_affiliation_string":"Department of Breast Surgery, Sichuan Provincial People\u2019s Hospital, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]},{"raw_affiliation_string":"Chinese Academy of Sciences Sichuan Translational Medicine Research Hospital, Chengdu, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090236250","display_name":"Hansen Cheng","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hansen Cheng","raw_affiliation_strings":["Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115595404","display_name":"Wenhao Ma","orcid":"https://orcid.org/0009-0004-7076-0889"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenhao Ma","raw_affiliation_strings":["Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102577949","display_name":"Guangchao Bao","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangchao Bao","raw_affiliation_strings":["Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081865568","display_name":"Liting Dong","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liting Dong","raw_affiliation_strings":["Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070790992","display_name":"Yixiong Gou","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yixiong Gou","raw_affiliation_strings":["Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022962290","display_name":"Jian Yang","orcid":"https://orcid.org/0000-0003-0091-0998"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jian Yang","raw_affiliation_strings":["Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China. stardustcx@163.com","Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China. stardustcx@163.com","institution_ids":[]},{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090189228","display_name":"Haoyang Cai","orcid":"https://orcid.org/0000-0001-8552-8565"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Haoyang Cai","raw_affiliation_strings":["Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China. haoyang.cai@scu.edu.cn","Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China. haoyang.cai@scu.edu.cn","institution_ids":[]},{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I24185976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5022962290","https://openalex.org/A5090189228"],"corresponding_institution_ids":["https://openalex.org/I24185976"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.3125,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.65090812,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"24","issue":"1","first_page":"463","last_page":"463"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.9763000011444092,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9466000199317932,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8261026740074158},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7127785682678223},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.6366439461708069},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4494462013244629},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.44059619307518005},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43684279918670654},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34115153551101685},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.22841137647628784},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1898328959941864}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8261026740074158},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7127785682678223},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.6366439461708069},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4494462013244629},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.44059619307518005},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43684279918670654},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34115153551101685},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.22841137647628784},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1898328959941864},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-023-05590-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05590-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05590-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38062357","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38062357","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10704760","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10704760","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10704760/pdf/12859_2023_Article_5590.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:9adf81d48ee5439f9ac75b9bf691cc8d","is_oa":true,"landing_page_url":"https://doaj.org/article/9adf81d48ee5439f9ac75b9bf691cc8d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-15 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05590-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05590-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05590-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2317433588","display_name":null,"funder_award_id":"32170648","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G40301894","display_name":null,"funder_award_id":"217064","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4389428438.pdf"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1492083415","https://openalex.org/W1602702667","https://openalex.org/W1984883254","https://openalex.org/W2069089843","https://openalex.org/W2103441770","https://openalex.org/W2114104545","https://openalex.org/W2198371822","https://openalex.org/W2286667211","https://openalex.org/W2582033455","https://openalex.org/W2583607171","https://openalex.org/W2739492614","https://openalex.org/W2747877289","https://openalex.org/W2775437905","https://openalex.org/W2794480084","https://openalex.org/W2800392236","https://openalex.org/W2801527818","https://openalex.org/W2807848287","https://openalex.org/W2897044695","https://openalex.org/W2920191405","https://openalex.org/W2923284916","https://openalex.org/W2931036699","https://openalex.org/W2947608130","https://openalex.org/W2949177718","https://openalex.org/W2949237386","https://openalex.org/W2949829455","https://openalex.org/W2950372712","https://openalex.org/W2951506174","https://openalex.org/W2952597168","https://openalex.org/W2968251763","https://openalex.org/W2971336800","https://openalex.org/W2972263821","https://openalex.org/W2979911343","https://openalex.org/W2989807288","https://openalex.org/W2997280954","https://openalex.org/W3012204315","https://openalex.org/W3087130263","https://openalex.org/W3128961456","https://openalex.org/W3164692211","https://openalex.org/W3166627873","https://openalex.org/W3209238322","https://openalex.org/W4226183288","https://openalex.org/W4283718372","https://openalex.org/W4286005528","https://openalex.org/W4322768301","https://openalex.org/W4323833116","https://openalex.org/W4362521490"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W2465382974","https://openalex.org/W2039578808","https://openalex.org/W2547528905"],"abstract_inverted_index":{"Single-cell":[0],"sequencing":[1,60,93,107,283],"has":[2],"shed":[3],"light":[4],"on":[5,105],"previously":[6],"inaccessible":[7],"biological":[8],"questions":[9],"from":[10,235],"different":[11],"fields":[12],"of":[13,25,84,184,192,263,272,281,289,299],"research,":[14],"including":[15],"organism":[16],"development,":[17],"immune":[18],"function,":[19],"and":[20,37,52,77,109,135,148,180,194,205,214,247,254,266,285,296],"disease":[21],"progression.":[22],"The":[23,303],"number":[24],"single-cell-based":[26],"studies":[27,265],"increased":[28],"dramatically":[29],"over":[30],"the":[31,82,117,138,182,202,219,224,230,251,261,269,279,287,294,300,310],"past":[32],"decade.":[33],"Several":[34],"new":[35,290],"methods":[36,108],"tools":[38,76,134,140,204,253,291],"have":[39],"been":[40],"continuously":[41],"developed,":[42],"making":[43],"it":[44],"extremely":[45],"tricky":[46],"to":[47,57,66,80,102,127,144,172,292],"navigate":[48],"this":[49,68],"research":[50,301],"landscape":[51],"develop":[53],"an":[54,120],"up-to-date":[55,130],"workflow":[56],"analyze":[58],"single-cell":[59,92,106,131,153,193,264,282],"data,":[61],"particularly":[62],"for":[63,99,152,243],"researchers":[64,85,171],"seeking":[65],"enter":[67],"field":[69],"without":[70],"computational":[71],"experience.":[72],"Moreover,":[73],"choosing":[74],"appropriate":[75],"optimal":[78],"parameters":[79,207,217],"meet":[81,293],"demands":[83],"represents":[86],"a":[87,96,164,190,273],"major":[88],"challenge":[89],"in":[90,177,209,223,229],"processing":[91,111,200],"data.":[94],"However,":[95],"specific":[97,206,270,274],"resource":[98,122,231],"easy":[100],"access":[101],"detailed":[103],"information":[104,227],"data":[110,154,244,284],"pipelines":[112],"is":[113,163,221,306],"still":[114],"lacking.":[115],"In":[116,158],"present":[118],"study,":[119],"online":[121],"called":[123],"SingleScan":[124,276,304],"was":[125,186,232,241],"developed":[126],"curate":[128],"all":[129,174],"transcriptome/genome":[132],"analyzing":[133,250],"pipelines.":[136],"All":[137,226],"available":[139,203],"were":[141,156],"categorized":[142],"according":[143],"their":[145],"main":[146],"tasks,":[147],"several":[149],"typical":[150],"workflows":[151],"analysis":[155,167,196,280],"summarized.":[157],"addition,":[159],"spatial":[160,195],"transcriptomics,":[161],"which":[162],"breakthrough":[165],"molecular":[166],"method":[168],"that":[169],"enables":[170],"measure":[173],"gene":[175],"activity":[176],"tissue":[178],"samples":[179],"map":[181],"site":[183],"activity,":[185],"included":[187,252],"along":[188],"with":[189],"portion":[191],"solutions.":[197],"For":[198],"each":[199],"step,":[201],"used":[208,228],"published":[210],"articles":[211],"are":[212],"provided":[213],"how":[215],"these":[216],"affect":[218],"results":[220],"shown":[222],"resource.":[225],"manually":[233],"extracted":[234],"related":[236],"literature.":[237],"An":[238],"interactive":[239],"website":[240,311],"designed":[242],"retrieval,":[245],"visualization,":[246],"download.":[248],"By":[249],"literature,":[255],"users":[256],"can":[257],"gain":[258],"insights":[259],"into":[260],"trends":[262],"easily":[267],"grasp":[268],"usage":[271],"tool.":[275],"will":[277],"facilitate":[278],"promote":[286],"development":[288],"growing":[295],"diverse":[297],"needs":[298],"community.":[302],"database":[305],"publicly":[307],"accessible":[308],"via":[309],"at":[312],"http://cailab.labshare.cn/SingleScan":[313],".":[314]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}
