{"id":"https://openalex.org/W4389731849","doi":"https://doi.org/10.1186/s12859-023-05585-6","title":"Twnbiome: a public database of the healthy Taiwanese gut microbiome","display_name":"Twnbiome: a public database of the healthy Taiwanese gut microbiome","publication_year":2023,"publication_date":"2023-12-14","ids":{"openalex":"https://openalex.org/W4389731849","doi":"https://doi.org/10.1186/s12859-023-05585-6","pmid":"https://pubmed.ncbi.nlm.nih.gov/38097965"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05585-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05585-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05585-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05585-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090291644","display_name":"Amrita Chattopadhyay","orcid":"https://orcid.org/0000-0002-0513-6551"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Amrita Chattopadhyay","raw_affiliation_strings":["Bioinformatics and Biostatistics Core, Centers of Genomic and Precision Medicine, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics Core, Centers of Genomic and Precision Medicine, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047428438","display_name":"Chien\u2010Yueh Lee","orcid":"https://orcid.org/0000-0002-4304-974X"},"institutions":[{"id":"https://openalex.org/I184693016","display_name":"China Medical University","ror":"https://ror.org/00v408z34","country_code":"TW","type":"education","lineage":["https://openalex.org/I184693016"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chien-Yueh Lee","raw_affiliation_strings":["Department of Biomedical Engineering, China Medical University, Taichung, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, China Medical University, Taichung, Taiwan","institution_ids":["https://openalex.org/I184693016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090267660","display_name":"Ya\u2010Chin Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Ya-Chin Lee","raw_affiliation_strings":["Department of Public Health, Institute of Health Data Analytics and Statistics, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Public Health, Institute of Health Data Analytics and Statistics, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001929912","display_name":"Chiang-Lin Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chiang-Lin Liu","raw_affiliation_strings":["Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016876786","display_name":"Hsin-Kuang Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Hsin-Kuang Chen","raw_affiliation_strings":["Center for Biotechnology, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biotechnology, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085683193","display_name":"Yung-Hua Li","orcid":"https://orcid.org/0000-0001-6235-8663"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yung-Hua Li","raw_affiliation_strings":["Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069812755","display_name":"Liang\u2010Chuan Lai","orcid":"https://orcid.org/0000-0002-3913-5338"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Liang-Chuan Lai","raw_affiliation_strings":["Bioinformatics and Biostatistics Core, Centers of Genomic and Precision Medicine, National Taiwan University, Taipei, Taiwan","Graduate Institute of Physiology, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics Core, Centers of Genomic and Precision Medicine, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Graduate Institute of Physiology, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008173365","display_name":"Mong\u2010Hsun Tsai","orcid":"https://orcid.org/0000-0001-8777-5818"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Mong-Hsun Tsai","raw_affiliation_strings":["Bioinformatics and Biostatistics Core, Centers of Genomic and Precision Medicine, National Taiwan University, Taipei, Taiwan","Center for Biotechnology, National Taiwan University, Taipei, Taiwan","Institute of Biotechnology, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics Core, Centers of Genomic and Precision Medicine, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Center for Biotechnology, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Institute of Biotechnology, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036428672","display_name":"Yen\u2010Hsuan Ni","orcid":"https://orcid.org/0000-0002-1158-5249"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I96323854","display_name":"National Yang Ming Chiao Tung University","ror":null,"country_code":"TW","type":null,"lineage":["https://openalex.org/I96323854"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yen-Hsuan Ni","raw_affiliation_strings":["College of Medicine, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864","https://openalex.org/I96323854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071816278","display_name":"Han\u2010Mo Chiu","orcid":"https://orcid.org/0000-0003-2786-8056"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210131804","display_name":"National Taiwan University Hospital","ror":"https://ror.org/03nteze27","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I4210131804"]},{"id":"https://openalex.org/I96323854","display_name":"National Yang Ming Chiao Tung University","ror":null,"country_code":"TW","type":null,"lineage":["https://openalex.org/I96323854"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Han-Mo Chiu","raw_affiliation_strings":["College of Medicine, National Taiwan University, Taipei, Taiwan","Department of Internal Medicine, National Taiwan University Hospital, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864","https://openalex.org/I96323854"]},{"raw_affiliation_string":"Department of Internal Medicine, National Taiwan University Hospital, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210131804"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025739002","display_name":"Tzu\u2010Pin Lu","orcid":"https://orcid.org/0000-0003-3697-0386"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I191969501","display_name":"National Taipei University of Nursing and Health Science","ror":"https://ror.org/019z71f50","country_code":"TW","type":"education","lineage":["https://openalex.org/I191969501"]},{"id":"https://openalex.org/I77199428","display_name":"National Taiwan Sport University","ror":"https://ror.org/01zjvhn75","country_code":"TW","type":"education","lineage":["https://openalex.org/I77199428"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Tzu-Pin Lu","raw_affiliation_strings":["Bioinformatics and Biostatistics Core, Centers of Genomic and Precision Medicine, National Taiwan University, Taipei, Taiwan. tplu@ntu.edu.tw","Department of Public Health, Institute of Health Data Analytics and Statistics, National Taiwan University, Taipei, Taiwan. tplu@ntu.edu.tw","Institute of Health Data Analytics and Statistics, National Taiwan University, Taipei, Taiwan. tplu@ntu.edu.tw","Department of Public Health, Institute of Health Data Analytics and Statistics, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics Core, Centers of Genomic and Precision Medicine, National Taiwan University, Taipei, Taiwan. tplu@ntu.edu.tw","institution_ids":["https://openalex.org/I77199428"]},{"raw_affiliation_string":"Department of Public Health, Institute of Health Data Analytics and Statistics, National Taiwan University, Taipei, Taiwan. tplu@ntu.edu.tw","institution_ids":["https://openalex.org/I191969501"]},{"raw_affiliation_string":"Institute of Health Data Analytics and Statistics, National Taiwan University, Taipei, Taiwan. tplu@ntu.edu.tw","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Department of Public Health, Institute of Health Data Analytics and Statistics, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062893898","display_name":"Eric Y. Chuang","orcid":"https://orcid.org/0000-0003-2530-0096"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210148468","display_name":"Industrial Technology Research Institute","ror":"https://ror.org/05szzwt63","country_code":"TW","type":"nonprofit","lineage":["https://openalex.org/I4210148468"]},{"id":"https://openalex.org/I99613584","display_name":"National Taipei University","ror":"https://ror.org/03e29r284","country_code":"TW","type":"education","lineage":["https://openalex.org/I99613584"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Eric Y. Chuang","raw_affiliation_strings":["Bioinformatics and Biostatistics Core, Centers of Genomic and Precision Medicine, National Taiwan University, Taipei, Taiwan. chuangey@ntu.edu.tw","Biomedical Technology and Device Research Laboratories, Industrial Technology Research Institute, Hsinchu, Taiwan. chuangey@ntu.edu.tw","Division Research and Development Center for Medical Devices, National Taiwan University, Taipei, Taiwan. chuangey@ntu.edu.tw","Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, Taiwan. chuangey@ntu.edu.tw","Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics Core, Centers of Genomic and Precision Medicine, National Taiwan University, Taipei, Taiwan. chuangey@ntu.edu.tw","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Biomedical Technology and Device Research Laboratories, Industrial Technology Research Institute, Hsinchu, Taiwan. chuangey@ntu.edu.tw","institution_ids":["https://openalex.org/I4210148468"]},{"raw_affiliation_string":"Division Research and Development Center for Medical Devices, National Taiwan University, Taipei, Taiwan. chuangey@ntu.edu.tw","institution_ids":["https://openalex.org/I99613584"]},{"raw_affiliation_string":"Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, Taiwan. chuangey@ntu.edu.tw","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5025739002","https://openalex.org/A5062893898"],"corresponding_institution_ids":["https://openalex.org/I16733864","https://openalex.org/I191969501","https://openalex.org/I4210148468","https://openalex.org/I77199428","https://openalex.org/I99613584"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.9899,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.77208094,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"24","issue":"1","first_page":"474","last_page":"474"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.9696000218391418,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9089999794960022,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6686781048774719},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6355732679367065},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6325120329856873},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.5640804171562195},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.5603294968605042},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5018577575683594},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4852988123893738},{"id":"https://openalex.org/keywords/gut-microbiome","display_name":"Gut microbiome","score":0.44292593002319336},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4376094341278076},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.34992900490760803},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.28362560272216797},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2834111452102661},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1760190725326538},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1222207248210907}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6686781048774719},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6355732679367065},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6325120329856873},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.5640804171562195},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.5603294968605042},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5018577575683594},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4852988123893738},{"id":"https://openalex.org/C3019978661","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut microbiome","level":3,"score":0.44292593002319336},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4376094341278076},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34992900490760803},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.28362560272216797},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2834111452102661},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1760190725326538},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1222207248210907},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-023-05585-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05585-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05585-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38097965","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38097965","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10722848","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10722848","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10722848/pdf/12859_2023_Article_5585.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:0db1e4f5ff8646d599b438eff7f1ed7f","is_oa":true,"landing_page_url":"https://doaj.org/article/0db1e4f5ff8646d599b438eff7f1ed7f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-13 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05585-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05585-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05585-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[{"id":"https://openalex.org/G1259713360","display_name":null,"funder_award_id":"GTZ-300","funder_id":"https://openalex.org/F4320323900","funder_display_name":"National Taiwan University"},{"id":"https://openalex.org/G4177248489","display_name":null,"funder_award_id":"112KKZA3T1","funder_id":"https://openalex.org/F4320323900","funder_display_name":"National Taiwan University"},{"id":"https://openalex.org/G4918867262","display_name":null,"funder_award_id":"NTU-112L9004","funder_id":"https://openalex.org/F4320331164","funder_display_name":"National Science and Technology Council"},{"id":"https://openalex.org/G7245781154","display_name":null,"funder_award_id":"NTU-112L9004","funder_id":"https://openalex.org/F4320323900","funder_display_name":"National Taiwan University"}],"funders":[{"id":"https://openalex.org/F4320322724","display_name":"Ministry of Education, India","ror":"https://ror.org/048xjjh50"},{"id":"https://openalex.org/F4320323900","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95"},{"id":"https://openalex.org/F4320331164","display_name":"National Science and Technology Council","ror":"https://ror.org/00wnb9798"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4389731849.pdf"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1557339302","https://openalex.org/W1934236512","https://openalex.org/W1992174684","https://openalex.org/W1996857219","https://openalex.org/W2004549986","https://openalex.org/W2014632252","https://openalex.org/W2015567271","https://openalex.org/W2032230795","https://openalex.org/W2034082915","https://openalex.org/W2052554412","https://openalex.org/W2056269468","https://openalex.org/W2087897706","https://openalex.org/W2108201840","https://openalex.org/W2113601822","https://openalex.org/W2120267228","https://openalex.org/W2120563211","https://openalex.org/W2124351063","https://openalex.org/W2125826054","https://openalex.org/W2126218947","https://openalex.org/W2128711701","https://openalex.org/W2128769815","https://openalex.org/W2131186249","https://openalex.org/W2135717147","https://openalex.org/W2142735254","https://openalex.org/W2291264396","https://openalex.org/W2337372962","https://openalex.org/W2340748026","https://openalex.org/W2402588103","https://openalex.org/W2560181459","https://openalex.org/W2581406049","https://openalex.org/W2663374310","https://openalex.org/W2746185049","https://openalex.org/W2775152143","https://openalex.org/W2787902098","https://openalex.org/W2886557383","https://openalex.org/W2887509155","https://openalex.org/W2894120184","https://openalex.org/W2972246166","https://openalex.org/W2972695893","https://openalex.org/W3012101321","https://openalex.org/W3213893926","https://openalex.org/W4362525658"],"related_works":["https://openalex.org/W2972511296","https://openalex.org/W3083218341","https://openalex.org/W2994966085","https://openalex.org/W4293056667","https://openalex.org/W3044286215","https://openalex.org/W2621141937","https://openalex.org/W4312476285","https://openalex.org/W2793187602","https://openalex.org/W3044328089","https://openalex.org/W2333607221"],"abstract_inverted_index":{"With":[0],"new":[1],"advances":[2],"in":[3,16,38,58],"next":[4],"generation":[5],"sequencing":[6,29],"(NGS)":[7],"technology":[8],"at":[9],"reduced":[10],"costs,":[11],"research":[12,154],"on":[13],"bacterial":[14],"genomes":[15],"the":[17,32,39,65,69,149,156],"environment":[18],"has":[19],"become":[20],"affordable.":[21],"Compared":[22],"to":[23,34,53,60,75,120,230],"traditional":[24],"methods,":[25],"NGS":[26,97,122],"provides":[27,160],"high-throughput":[28],"reads":[30],"and":[31,48,72,106,118,124,194,209,224,254],"ability":[33],"identify":[35],"many":[36],"species":[37],"microbiome":[40,136,166],"that":[41],"were":[42],"previously":[43],"unknown.":[44],"Numerous":[45],"bioinformatics":[46],"tools":[47,71,105],"algorithms":[49],"have":[50],"been":[51],"developed":[52],"conduct":[54,121],"such":[55,221],"analyses.":[56],"However,":[57],"order":[59],"obtain":[61],"biologically":[62],"meaningful":[63],"results,":[64],"researcher":[66],"must":[67],"select":[68],"proper":[70],"combine":[73],"them":[74],"construct":[76],"an":[77,96,191,200,215],"efficient":[78],"pipeline.":[79],"This":[80],"complex":[81],"procedure":[82],"may":[83],"include":[84],"tens":[85],"of":[86,89,103,151,187,235],"tools,":[87],"each":[88],"which":[90,111,138,173,218],"require":[91],"correct":[92],"parameter":[93],"settings.":[94],"Furthermore,":[95],"data":[98,208,241],"analysis":[99,123,201],"involves":[100],"multiple":[101],"series":[102],"command-line":[104],"requires":[107],"extensive":[108],"computational":[109],"resources,":[110],"imposes":[112],"a":[113,133,163,169,178,185,232,243],"high":[114],"barrier":[115],"for":[116,155,180,184],"biologists":[117],"clinicians":[119,223],"even":[125],"interpret":[126],"their":[127,207],"own":[128],"data.":[129],"Therefore,":[130],"we":[131,139],"established":[132],"public":[134],"gut":[135,165],"database,":[137],"call":[140],"Twnbiome,":[141],"created":[142],"using":[143],"healthy":[144,170],"subjects":[145],"from":[146,168],"Taiwan,":[147],"with":[148,162,242,251],"goal":[150],"enabling":[152],"microbiota":[153],"Taiwanese":[157,171],"population.":[158],"Twnbiome":[159,197,213],"users":[161,204,220],"baseline":[164],"panel":[167],"cohort,":[172],"can":[174,205,226],"be":[175],"utilized":[176],"as":[177,222],"reference":[179],"conducting":[181],"case-control":[182],"studies":[183],"variety":[186],"diseases.":[188],"It":[189],"is":[190],"interactive,":[192],"informative,":[193],"user-friendly":[195],"database.":[196],"additionally":[198],"offers":[199,214],"pipeline,":[202],"where":[203],"upload":[206],"download":[210],"analyzed":[211],"results.":[212],"online":[216],"database":[217],"non-bioinformatics":[219],"doctors":[225],"not":[227],"only":[228],"utilize":[229],"access":[231],"control":[233],"set":[234],"data,":[236],"but":[237],"also":[238],"analyze":[239],"raw":[240],"few":[244],"easy":[245],"clicks.":[246],"All":[247],"results":[248],"are":[249],"customizable":[250],"ready-made":[252],"plots":[253],"easily":[255],"downloadable":[256],"tables.":[257],"Database":[258],"URL:":[259],"http://twnbiome.cgm.ntu.edu.tw/":[260],".":[261]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2}],"updated_date":"2026-06-17T06:14:20.161405","created_date":"2025-10-10T00:00:00"}
