{"id":"https://openalex.org/W4389239374","doi":"https://doi.org/10.1186/s12859-023-05582-9","title":"HostNet: improved sequence representation in deep neural networks for virus-host prediction","display_name":"HostNet: improved sequence representation in deep neural networks for virus-host prediction","publication_year":2023,"publication_date":"2023-12-01","ids":{"openalex":"https://openalex.org/W4389239374","doi":"https://doi.org/10.1186/s12859-023-05582-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/38041071"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05582-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05582-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05582-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05582-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017748295","display_name":"Zhaoyan Ming","orcid":"https://orcid.org/0000-0002-6766-4579"},"institutions":[{"id":"https://openalex.org/I4400573310","display_name":"Hangzhou City University","ror":"https://ror.org/01wck0s05","country_code":null,"type":"education","lineage":["https://openalex.org/I4400573310"]},{"id":"https://openalex.org/I6469544","display_name":"City University of Macau","ror":"https://ror.org/04gpd4q15","country_code":"MO","type":"education","lineage":["https://openalex.org/I6469544"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Zhaoyan Ming","raw_affiliation_strings":["School of Computer and Computing Science, Hangzhou City University, Hangzhou, 310015, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer and Computing Science, Hangzhou City University, Hangzhou, 310015, China","institution_ids":["https://openalex.org/I6469544","https://openalex.org/I4400573310"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100701680","display_name":"Xiangjun Chen","orcid":"https://orcid.org/0000-0003-0766-3416"},"institutions":[{"id":"https://openalex.org/I4210132079","display_name":"Hangzhou Wanxiang Polytechnic","ror":"https://ror.org/03sxnxp24","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210132079"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangjun Chen","raw_affiliation_strings":["Polytechnic Institute, Zhejiang University, Hangzhou, 310058, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Polytechnic Institute, Zhejiang University, Hangzhou, 310058, China","institution_ids":["https://openalex.org/I4210132079","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043986098","display_name":"Shunlong Wang","orcid":"https://orcid.org/0000-0003-1310-9817"},"institutions":[{"id":"https://openalex.org/I4210106882","display_name":"Wuhan Institute of Virology","ror":"https://ror.org/01jxjav08","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106882"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shunlong Wang","raw_affiliation_strings":["Key Laboratory of Virology and Biosafety, Wuhan Institute of Virology, Wuhan, 430071, China","University of Chinese Academy of Sciences, Beijing, 100190, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Virology and Biosafety, Wuhan Institute of Virology, Wuhan, 430071, China","institution_ids":["https://openalex.org/I4210106882"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, Beijing, 100190, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017035011","display_name":"Hong Liu","orcid":"https://orcid.org/0000-0002-5182-4750"},"institutions":[{"id":"https://openalex.org/I119203015","display_name":"Shandong University of Technology","ror":"https://ror.org/02mr3ar13","country_code":"CN","type":"education","lineage":["https://openalex.org/I119203015"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hong Liu","raw_affiliation_strings":["Institute of Biomedicine, Shandong University of Technology, Zibo, 255000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biomedicine, Shandong University of Technology, Zibo, 255000, China","institution_ids":["https://openalex.org/I119203015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101632783","display_name":"Zhiming Yuan","orcid":"https://orcid.org/0000-0002-3234-9616"},"institutions":[{"id":"https://openalex.org/I4210106882","display_name":"Wuhan Institute of Virology","ror":"https://ror.org/01jxjav08","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106882"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiming Yuan","raw_affiliation_strings":["Key Laboratory of Virology and Biosafety, Wuhan Institute of Virology, Wuhan, 430071, China","University of Chinese Academy of Sciences, Beijing, 100190, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Virology and Biosafety, Wuhan Institute of Virology, Wuhan, 430071, China","institution_ids":["https://openalex.org/I4210106882"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, Beijing, 100190, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101925641","display_name":"Minghui Wu","orcid":"https://orcid.org/0000-0001-8179-7119"},"institutions":[{"id":"https://openalex.org/I4400573310","display_name":"Hangzhou City University","ror":"https://ror.org/01wck0s05","country_code":null,"type":"education","lineage":["https://openalex.org/I4400573310"]},{"id":"https://openalex.org/I6469544","display_name":"City University of Macau","ror":"https://ror.org/04gpd4q15","country_code":"MO","type":"education","lineage":["https://openalex.org/I6469544"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN","MO"],"is_corresponding":false,"raw_author_name":"Minghui Wu","raw_affiliation_strings":["School of Computer and Computing Science, Hangzhou City University, Hangzhou, 310015, China. mhwu@zucc.edu.cn","School of Computer and Computing Science, Hangzhou City University, Hangzhou, 310015, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer and Computing Science, Hangzhou City University, Hangzhou, 310015, China. mhwu@zucc.edu.cn","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"School of Computer and Computing Science, Hangzhou City University, Hangzhou, 310015, China","institution_ids":["https://openalex.org/I6469544","https://openalex.org/I4400573310"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024951053","display_name":"Han Xia","orcid":"https://orcid.org/0000-0001-9932-6040"},"institutions":[{"id":"https://openalex.org/I4210106882","display_name":"Wuhan Institute of Virology","ror":"https://ror.org/01jxjav08","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106882"]},{"id":"https://openalex.org/I4210140771","display_name":"The First People's Hospital of Jiangxia District","ror":"https://ror.org/043rwwa27","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210140771"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Han Xia","raw_affiliation_strings":["Hubei Jiangxia Laboratory, Wuhan, 430200, China. hanxia@wh.iov.cn","Key Laboratory of Virology and Biosafety, Wuhan Institute of Virology, Wuhan, 430071, China. hanxia@wh.iov.cn","University of Chinese Academy of Sciences, Beijing, 100190, China. hanxia@wh.iov.cn","Key Laboratory of Virology and Biosafety, Wuhan Institute of Virology, Wuhan, 430071, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Jiangxia Laboratory, Wuhan, 430200, China. hanxia@wh.iov.cn","institution_ids":["https://openalex.org/I4210140771"]},{"raw_affiliation_string":"Key Laboratory of Virology and Biosafety, Wuhan Institute of Virology, Wuhan, 430071, China. hanxia@wh.iov.cn","institution_ids":["https://openalex.org/I4210106882"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, Beijing, 100190, China. hanxia@wh.iov.cn","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Key Laboratory of Virology and Biosafety, Wuhan Institute of Virology, Wuhan, 430071, China","institution_ids":["https://openalex.org/I4210106882"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.3045,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.88417541,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"24","issue":"1","first_page":"455","last_page":"455"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11780","display_name":"Rabies epidemiology and control","score":0.8906000256538391,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11780","display_name":"Rabies epidemiology and control","score":0.8906000256538391,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10166","display_name":"Mosquito-borne diseases and control","score":0.0215000007301569,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.01600000075995922,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.6892502307891846},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5540341138839722},{"id":"https://openalex.org/keywords/lyssavirus","display_name":"Lyssavirus","score":0.552878737449646},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5181475877761841},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5147202610969543},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4640461802482605},{"id":"https://openalex.org/keywords/zika-virus","display_name":"Zika virus","score":0.4250045418739319},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40237927436828613},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3355732560157776},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.25440385937690735},{"id":"https://openalex.org/keywords/rabies-virus","display_name":"Rabies virus","score":0.22537267208099365},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.12350970506668091},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09090352058410645}],"concepts":[{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.6892502307891846},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5540341138839722},{"id":"https://openalex.org/C2779811178","wikidata":"https://www.wikidata.org/wiki/Q940434","display_name":"Lyssavirus","level":5,"score":0.552878737449646},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5181475877761841},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5147202610969543},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4640461802482605},{"id":"https://openalex.org/C2777053367","wikidata":"https://www.wikidata.org/wiki/Q202864","display_name":"Zika virus","level":3,"score":0.4250045418739319},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40237927436828613},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3355732560157776},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.25440385937690735},{"id":"https://openalex.org/C2777961786","wikidata":"https://www.wikidata.org/wiki/Q698976","display_name":"Rabies virus","level":3,"score":0.22537267208099365},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.12350970506668091},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09090352058410645},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C2777974785","wikidata":"https://www.wikidata.org/wiki/Q1356983","display_name":"Rhabdoviridae","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-023-05582-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05582-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05582-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38041071","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38041071","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10691023","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10691023","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10691023/pdf/12859_2023_Article_5582.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:6eac510e46fd424ba7da2195f3523e9d","is_oa":true,"landing_page_url":"https://doaj.org/article/6eac510e46fd424ba7da2195f3523e9d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-21 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05582-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05582-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05582-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2635788571","display_name":null,"funder_award_id":"No. 2022YFC2302700","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G583064405","display_name":"\u9762\u5411\u7cd6\u5c3f\u75c5\u81b3\u98df\u8bb0\u5f55\u7684\u98df\u7269\u56fe\u50cf-\u8425\u517b\u591a\u6a21\u6001\u8868\u793a\u548c\u89c6\u89c9\u8bc6\u522b\u65b9\u6cd5\u7814\u7a76","funder_award_id":"LQ23F020002","funder_id":"https://openalex.org/F4320338464","funder_display_name":"Natural Science Foundation of Zhejiang Province"},{"id":"https://openalex.org/G7043763720","display_name":null,"funder_award_id":"2021C01164","funder_id":"https://openalex.org/F4320338464","funder_display_name":"Natural Science Foundation of Zhejiang Province"},{"id":"https://openalex.org/G768008931","display_name":null,"funder_award_id":"2021TTM010","funder_id":"https://openalex.org/F4320324785","funder_display_name":"Hainan Medical University"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324785","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320338464","display_name":"Natural Science Foundation of Zhejiang Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389239374.pdf"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1501531009","https://openalex.org/W2055043387","https://openalex.org/W2146341019","https://openalex.org/W2215292177","https://openalex.org/W2245444176","https://openalex.org/W2508498860","https://openalex.org/W2767106145","https://openalex.org/W2860192827","https://openalex.org/W2885195348","https://openalex.org/W2887749901","https://openalex.org/W2899317755","https://openalex.org/W2950044547","https://openalex.org/W2961729414","https://openalex.org/W2973098646","https://openalex.org/W2999481648","https://openalex.org/W3023746197","https://openalex.org/W3037253559","https://openalex.org/W3048846953","https://openalex.org/W3094518056","https://openalex.org/W3134084134","https://openalex.org/W3152659908","https://openalex.org/W3177828909","https://openalex.org/W3201486041","https://openalex.org/W3201872604","https://openalex.org/W3216174433","https://openalex.org/W4206182892","https://openalex.org/W4220842520","https://openalex.org/W4225845191","https://openalex.org/W4239025696","https://openalex.org/W4286209493","https://openalex.org/W4366084634","https://openalex.org/W4389239374","https://openalex.org/W6604896550","https://openalex.org/W6680919041","https://openalex.org/W6977192816"],"related_works":["https://openalex.org/W2346492446","https://openalex.org/W4310704641","https://openalex.org/W2904256540","https://openalex.org/W2889179923","https://openalex.org/W2527816288","https://openalex.org/W2795106704","https://openalex.org/W3080470203","https://openalex.org/W2599306341","https://openalex.org/W3029684245","https://openalex.org/W2810866908"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,87,144,171,238],"escalation":[2],"of":[3,30,40,45,83,90,108,123,155,161,168,181,189,201,212,219],"viruses":[4,73],"over":[5],"the":[6,11,28,37,42,64,79,121,166,199,227],"past":[7],"decade":[8],"has":[9],"highlighted":[10],"need":[12],"to":[13,27,66,148,164,184,197,307],"determine":[14],"their":[15,309],"respective":[16],"hosts,":[17],"particularly":[18],"for":[19,71,194,260,286],"emerging":[20,84],"ones":[21],"that":[22,133,224],"pose":[23],"a":[24,55,113,129,135,151,158,186,209,257,283,304],"potential":[25,281,310],"menace":[26],"welfare":[29],"both":[31],"human":[32],"and":[33,51,57,81,99,115,138,191,215,235,252,272,313,323],"animal":[34],"life.":[35],"Yet,":[36],"traditional":[38],"means":[39],"ascertaining":[41],"host":[43,69],"range":[44,160],"viruses,":[46],"which":[47],"involves":[48,93],"field":[49],"surveillance":[50],"laboratory":[52],"experiments,":[53],"is":[54,112,256,303],"laborious":[56],"demanding":[58],"undertaking.":[59],"A":[60],"computational":[61,105],"tool":[62,285],"with":[63,315],"capability":[65],"reliably":[67],"predict":[68],"ranges":[70],"novel":[72],"can":[74],"provide":[75],"timely":[76],"responses":[77],"in":[78,232,249,289],"prevention":[80],"control":[82],"infectious":[85],"diseases.":[86],"intricate":[88],"nature":[89],"viral-host":[91],"prediction":[92,288,294],"issues":[94],"such":[95],"as":[96,282],"data":[97,169,202],"imbalance":[98],"deficiency.":[100,170],"Therefore,":[101],"developing":[102],"highly":[103],"accurate":[104],"tools":[106],"capable":[107],"predicting":[109,261],"virus-host":[110,124,287],"associations":[111],"challenging":[114,250],"pressing":[116],"demand.":[117],"RESULTS:":[118],"To":[119],"overcome":[120],"challenges":[122,268],"prediction,":[125],"we":[126],"present":[127],"HostNet,":[128],"deep":[130,229,300],"learning":[131],"framework":[132,259],"utilizes":[134],"Transformer-CNN-BiGRU":[136],"architecture":[137],"two":[139],"enhanced":[140,239],"sequence":[141,196,240,275],"representation":[142,154,241],"modules.":[143],"first":[145],"module,":[146,173],"k-mer":[147],"vector,":[149],"pre-trains":[150],"background":[152],"vector":[153],"k-mers":[156],"from":[157,264],"broad":[159],"virus":[162,179,262,274],"sequences":[163,180,298],"address":[165,198],"issue":[167,200],"second":[172],"an":[174,216],"adaptive":[175],"sliding":[176],"window,":[177],"truncates":[178],"various":[182,290],"lengths":[183],"create":[185],"uniform":[187],"number":[188],"informative":[190],"distinct":[192],"samples":[193],"each":[195],"imbalance.":[203],"We":[204],"assess":[205],"HostNet's":[206,245],"performance":[207,248],"on":[208,296,318],"benchmark":[210],"dataset":[211,218],"\"Rabies":[213],"lyssavirus\"":[214],"in-house":[217],"\"Flavivirus\".":[220],"Our":[221,277],"results":[222,278],"show":[223],"HostNet":[225,255],"surpasses":[226],"state-of-the-art":[228],"learning-based":[230],"method":[231],"host-prediction":[233],"accuracies":[234],"F1":[236],"score.":[237],"modules,":[242],"significantly":[243],"improve":[244],"training":[246],"generalization,":[247],"classes,":[251],"stability.":[253],"CONCLUSION:":[254],"promising":[258,305],"hosts":[263,311],"genomic":[265,297],"sequences,":[266],"addressing":[267],"posed":[269],"by":[270],"sparse":[271],"varying-length":[273],"data.":[276],"demonstrate":[279],"its":[280],"valuable":[284],"biological":[291],"contexts.":[292],"Virus-host":[293],"based":[295],"using":[299],"neural":[301],"networks":[302],"approach":[306],"identifying":[308],"accurately":[312],"efficiently,":[314],"significant":[316],"impacts":[317],"public":[319],"health,":[320],"disease":[321],"prevention,":[322],"vaccine":[324],"development.":[325]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-13T07:31:44.756512","created_date":"2025-10-10T00:00:00"}