{"id":"https://openalex.org/W4388879757","doi":"https://doi.org/10.1186/s12859-023-05569-6","title":"A cell abundance analysis based on efficient PAM clustering for a better understanding of the dynamics of endometrial remodelling","display_name":"A cell abundance analysis based on efficient PAM clustering for a better understanding of the dynamics of endometrial remodelling","publication_year":2023,"publication_date":"2023-11-22","ids":{"openalex":"https://openalex.org/W4388879757","doi":"https://doi.org/10.1186/s12859-023-05569-6","pmid":"https://pubmed.ncbi.nlm.nih.gov/37990148"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05569-6","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-023-05569-6","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-023-05569-6.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-023-05569-6.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070450002","display_name":"Juan Domingo","orcid":"https://orcid.org/0000-0003-4728-6256"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Juan Domingo","raw_affiliation_strings":["Department of Informatics, ETSE, University of Valencia, Avda. de la Universidad, s/n, 46100, Burjasot, Valencia, Spain. Juan.Domingo@uv.es","Department of Informatics, ETSE, University of Valencia, Avda. de la Universidad, s/n, 46100, Burjasot, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, ETSE, University of Valencia, Avda. de la Universidad, s/n, 46100, Burjasot, Valencia, Spain. Juan.Domingo@uv.es","institution_ids":["https://openalex.org/I16097986"]},{"raw_affiliation_string":"Department of Informatics, ETSE, University of Valencia, Avda. de la Universidad, s/n, 46100, Burjasot, Valencia, Spain","institution_ids":["https://openalex.org/I16097986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093312007","display_name":"Oleksandra Kutsyr-Kolesnyk","orcid":null},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Oleksandra Kutsyr-Kolesnyk","raw_affiliation_strings":["Department of Statistics and Operations Research, University of Valencia, Avda. Vicente Andres Estelles, 46100, Burjasot, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics and Operations Research, University of Valencia, Avda. Vicente Andres Estelles, 46100, Burjasot, Valencia, Spain","institution_ids":["https://openalex.org/I16097986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085290863","display_name":"Teresa Le\u00f3n","orcid":"https://orcid.org/0000-0001-5171-4159"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Teresa Leon","raw_affiliation_strings":["Department of Statistics and Operations Research, University of Valencia, Avda. Vicente Andres Estelles, 46100, Burjasot, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics and Operations Research, University of Valencia, Avda. Vicente Andres Estelles, 46100, Burjasot, Valencia, Spain","institution_ids":["https://openalex.org/I16097986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054911171","display_name":"Ra\u00fal P\u00e9rez-Moraga","orcid":"https://orcid.org/0000-0002-9611-9123"},"institutions":[{"id":"https://openalex.org/I4210154725","display_name":"Igenomix","ror":"https://ror.org/04mjvsy78","country_code":"ES","type":"other","lineage":["https://openalex.org/I4210154725"]},{"id":"https://openalex.org/I4210158373","display_name":"INCLIVA Health Research Institute","ror":"https://ror.org/059wbyv33","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210158373"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Raul Perez-Moraga","raw_affiliation_strings":["Carlos Simon Foundation, INCLIVA Health Research Institute, Eduardo Primo Yufera, 46012, Valencia, Valencia, Spain","Igenomix R&D, Technology Park, 46980, Paterna, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carlos Simon Foundation, INCLIVA Health Research Institute, Eduardo Primo Yufera, 46012, Valencia, Valencia, Spain","institution_ids":["https://openalex.org/I4210158373"]},{"raw_affiliation_string":"Igenomix R&D, Technology Park, 46980, Paterna, Valencia, Spain","institution_ids":["https://openalex.org/I4210154725"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076964072","display_name":"Guillermo Ayala","orcid":"https://orcid.org/0000-0002-6231-2865"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Guillermo Ayala","raw_affiliation_strings":["Department of Statistics and Operations Research, University of Valencia, Avda. Vicente Andres Estelles, 46100, Burjasot, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics and Operations Research, University of Valencia, Avda. Vicente Andres Estelles, 46100, Burjasot, Valencia, Spain","institution_ids":["https://openalex.org/I16097986"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027749178","display_name":"Beatriz Ros\u00f3n","orcid":"https://orcid.org/0000-0002-9851-2025"},"institutions":[{"id":"https://openalex.org/I4210158373","display_name":"INCLIVA Health Research Institute","ror":"https://ror.org/059wbyv33","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210158373"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Beatriz Roson","raw_affiliation_strings":["Carlos Simon Foundation, INCLIVA Health Research Institute, Eduardo Primo Yufera, 46012, Valencia, Valencia, Spain. broson@fundacioncarlossimon.com","Carlos Simon Foundation, INCLIVA Health Research Institute, Eduardo Primo Yufera, 46012, Valencia, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carlos Simon Foundation, INCLIVA Health Research Institute, Eduardo Primo Yufera, 46012, Valencia, Valencia, Spain. broson@fundacioncarlossimon.com","institution_ids":["https://openalex.org/I4210158373"]},{"raw_affiliation_string":"Carlos Simon Foundation, INCLIVA Health Research Institute, Eduardo Primo Yufera, 46012, Valencia, Valencia, Spain","institution_ids":["https://openalex.org/I4210158373"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5027749178","https://openalex.org/A5070450002"],"corresponding_institution_ids":["https://openalex.org/I16097986","https://openalex.org/I4210158373"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.9958,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.7714832,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"24","issue":"1","first_page":"440","last_page":"440"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9810000061988831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9810000061988831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.0032999999821186066,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.002099999925121665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.8011527061462402},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6476179957389832},{"id":"https://openalex.org/keywords/medoid","display_name":"Medoid","score":0.5637649893760681},{"id":"https://openalex.org/keywords/covariate","display_name":"Covariate","score":0.4910898208618164},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46426156163215637},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.41920509934425354},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39998582005500793},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3097544312477112},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.26282039284706116},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.18569639325141907}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.8011527061462402},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6476179957389832},{"id":"https://openalex.org/C63085389","wikidata":"https://www.wikidata.org/wiki/Q4287912","display_name":"Medoid","level":3,"score":0.5637649893760681},{"id":"https://openalex.org/C119043178","wikidata":"https://www.wikidata.org/wiki/Q320723","display_name":"Covariate","level":2,"score":0.4910898208618164},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46426156163215637},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.41920509934425354},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39998582005500793},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3097544312477112},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.26282039284706116},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.18569639325141907},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004717","descriptor_name":"Endometrium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004717","descriptor_name":"Endometrium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004717","descriptor_name":"Endometrium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-023-05569-6","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-023-05569-6","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-023-05569-6.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37990148","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37990148","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10664584","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10664584","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10664584/pdf/12859_2023_Article_5569.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:13580b8301c8456b98cd7e489a7bae72","is_oa":true,"landing_page_url":"https://doaj.org/article/13580b8301c8456b98cd7e489a7bae72","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-26 (2023)","raw_type":"article"},{"id":"pmh:oai:roderic.uv.es:10550/93845","is_oa":true,"landing_page_url":"https://hdl.handle.net/10550/93845","pdf_url":null,"source":{"id":"https://openalex.org/S4306400245","display_name":"Repository of Digital Objects for Teaching Research and Culture (University of Valencia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16097986","host_organization_name":"Universitat de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I16097986"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05569-6","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-023-05569-6","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-023-05569-6.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1643949827","display_name":null,"funder_award_id":"AEI/10.13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G2262748287","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G2309174360","display_name":null,"funder_award_id":"10.13039","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G2586913425","display_name":null,"funder_award_id":"MCIN/ AEI/10.13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G2660406951","display_name":null,"funder_award_id":"/ AEI/10","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G2671204574","display_name":null,"funder_award_id":"/ AEI/10.13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G300979063","display_name":null,"funder_award_id":"10.13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3114316098","display_name":null,"funder_award_id":"MCIN/ AEI/10.13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G4017095837","display_name":null,"funder_award_id":"AEI/10.13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G4179394605","display_name":null,"funder_award_id":"MCIN/ AEI/10","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G4766124150","display_name":null,"funder_award_id":"874867","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G5080475149","display_name":null,"funder_award_id":"10.13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G5421974903","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G5550858994","display_name":null,"funder_award_id":"AEI/10","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G570831590","display_name":null,"funder_award_id":"PID2020-117114GB-I00","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G5805502524","display_name":null,"funder_award_id":"PID2020","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G6589649124","display_name":null,"funder_award_id":"PID2020-","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G683931746","display_name":null,"funder_award_id":"H2020","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7084143925","display_name":null,"funder_award_id":"AEI/10","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7266728691","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7535663061","display_name":null,"funder_award_id":"AEI/10.","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7643708868","display_name":null,"funder_award_id":"10.13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G8055432103","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4388879757.pdf","grobid_xml":"https://content.openalex.org/works/W4388879757.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W182589694","https://openalex.org/W1451684643","https://openalex.org/W1490261451","https://openalex.org/W1493454437","https://openalex.org/W1533158188","https://openalex.org/W1987971958","https://openalex.org/W2034835799","https://openalex.org/W2069089843","https://openalex.org/W2069902854","https://openalex.org/W2082864993","https://openalex.org/W2086024860","https://openalex.org/W2088430547","https://openalex.org/W2108662489","https://openalex.org/W2123080882","https://openalex.org/W2124044975","https://openalex.org/W2130116522","https://openalex.org/W2131681506","https://openalex.org/W2136687258","https://openalex.org/W2164002837","https://openalex.org/W2178888844","https://openalex.org/W2204640292","https://openalex.org/W2325674170","https://openalex.org/W2472063172","https://openalex.org/W2516455020","https://openalex.org/W2540833380","https://openalex.org/W2581151820","https://openalex.org/W2598326928","https://openalex.org/W2606864355","https://openalex.org/W2612538354","https://openalex.org/W2794480084","https://openalex.org/W2800392236","https://openalex.org/W2884197618","https://openalex.org/W2897098291","https://openalex.org/W2897249806","https://openalex.org/W2942880491","https://openalex.org/W2947400018","https://openalex.org/W2949177718","https://openalex.org/W2949237386","https://openalex.org/W2963132013","https://openalex.org/W2979595830","https://openalex.org/W2980696159","https://openalex.org/W3004831330","https://openalex.org/W3048451018","https://openalex.org/W3086909323","https://openalex.org/W3099768174","https://openalex.org/W3100987608","https://openalex.org/W3106188259","https://openalex.org/W3136595794","https://openalex.org/W3161562754","https://openalex.org/W3164387821","https://openalex.org/W3164692211","https://openalex.org/W3203496375","https://openalex.org/W3214755680","https://openalex.org/W4233637541","https://openalex.org/W4235169531","https://openalex.org/W4286716971","https://openalex.org/W4313830852","https://openalex.org/W4386744632","https://openalex.org/W4399568946"],"related_works":["https://openalex.org/W3133849001","https://openalex.org/W2022056881","https://openalex.org/W2081066201","https://openalex.org/W3048556888","https://openalex.org/W2985746494","https://openalex.org/W1565904848","https://openalex.org/W3125180355","https://openalex.org/W2587710587","https://openalex.org/W2100425112","https://openalex.org/W2742735109"],"abstract_inverted_index":{"BACKGROUND:":[0],"Single-cell":[1],"RNA":[2],"sequencing":[3],"(scRNA-seq)":[4],"is":[5,54],"a":[6,70,110,119,127,162,255],"powerful":[7],"tool":[8],"for":[9,112],"investigating":[10],"cell":[11,21,144,149],"abundance":[12,22,114,145],"changes":[13,288],"during":[14,293],"tissue":[15],"regeneration":[16],"and":[17,37,41,103,122,176,192,201,236,247],"remodeling":[18],"processes.":[19],"Differential":[20],"supports":[23],"the":[24,31,42,48,52,60,76,86,142,152,157,185,195,202,205,226,273,278,285,290,294,298],"initial":[25],"clustering":[26,61,72,120,187,249],"of":[27,33,44,51,79,146,156,174,198,204,222,234,250,252,287,297],"all":[28],"cells;":[29],"then,":[30],"number":[32],"cells":[34,253],"per":[35],"cluster":[36,89],"sample":[38],"are":[39],"evaluated,":[40],"dependence":[43],"these":[45],"counts":[46],"concerning":[47],"phenotypic":[49],"covariates":[50,132],"samples":[53],"studied.":[55],"Analysis":[56],"heavily":[57],"depends":[58],"on":[59],"method.":[62],"Partitioning":[63],"Around":[64],"Medoids":[65],"(PAM":[66],"or":[67],"k-medoids)":[68],"represents":[69],"well-established":[71],"procedure":[73],"that":[74,167,215],"leverages":[75],"downstream":[77],"interpretation":[78],"clusters":[80],"by":[81],"pinpointing":[82],"real":[83],"individuals":[84],"in":[85,180,225,232,289],"dataset":[87],"as":[88,118,126],"centers":[90],"(medoids)":[91],"without":[92],"reducing":[93],"dimensions.":[94],"Of":[95],"note,":[96],"PAM":[97,117,244],"suffers":[98],"from":[99,258],"high":[100],"computational":[101,196],"costs":[102],"memory":[104,237],"requirements.":[105],"RESULTS:":[106],"This":[107],"paper":[108],"proposes":[109],"method":[111,121,188],"differential":[113,143],"analysis":[115],"using":[116,208],"negative":[123],"binomial":[124],"regression":[125],"statistical":[128],"model":[129],"to":[130,133,140,240,260,284],"relate":[131],"cluster/cell":[134],"counts.":[135],"We":[136,160,183],"used":[137],"this":[138,178,181],"approach":[139,267],"study":[141,286],"human":[147,291],"endometrial":[148],"types":[150],"throughout":[151],"natural":[153],"secretory":[154,295],"phase":[155,296],"menstrual":[158,299],"cycle.":[159,300],"developed":[161],"new":[163,270],"R":[164],"package":[165,179],"-scellpam-,":[166],"incorporates":[168],"an":[169],"efficient":[170],"parallel":[171],"C++":[172],"implementation":[173,200,221],"PAM,":[175],"applied":[177,283],"study.":[182],"compared":[184,239],"PAM-BS":[186],"with":[189,212,254,277],"other":[190,241],"methods":[191],"evaluated":[193],"both":[194],"aspects":[197],"its":[199],"quality":[203],"classifications":[206],"obtained":[207],"distinct":[209],"published":[210],"datasets":[211],"known":[213],"subpopulations":[214,275],"demonstrate":[216],"promising":[217],"results.":[218],"CONCLUSIONS:":[219],"The":[220],"PAM-BS,":[223],"included":[224],"scellpam":[227],"package,":[228],"exhibits":[229],"robust":[230,248],"performance":[231],"terms":[233],"speed":[235],"usage":[238],"related":[242],"methods.":[243],"allowed":[245],"quick":[246],"sets":[251],"size":[256],"ranging":[257],"70,000":[259],"300,000":[261],"cells.":[262],"https://cran.r-project.org/web/packages/scellpam/index.html":[263],".":[264],"Finally,":[265],"our":[266],"provides":[268],"important":[269],"insights":[271],"into":[272],"transient":[274],"associated":[276],"fertile":[279],"time":[280],"frame":[281],"when":[282],"endometrium":[292]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
