{"id":"https://openalex.org/W4389193849","doi":"https://doi.org/10.1186/s12859-023-05566-9","title":"PMFFRC: a large-scale genomic short reads compression optimizer via memory modeling and redundant clustering","display_name":"PMFFRC: a large-scale genomic short reads compression optimizer via memory modeling and redundant clustering","publication_year":2023,"publication_date":"2023-11-30","ids":{"openalex":"https://openalex.org/W4389193849","doi":"https://doi.org/10.1186/s12859-023-05566-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/38036969"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05566-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05566-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05566-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05566-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104667219","display_name":"Hui Sun","orcid":"https://orcid.org/0000-0003-0290-142X"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]},{"id":"https://openalex.org/I98301712","display_name":"Baidu (China)","ror":"https://ror.org/03vs3wt56","country_code":"CN","type":"company","lineage":["https://openalex.org/I98301712"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Sun","raw_affiliation_strings":["Nankai-Baidu Joint Laboratory, College of Computer Science, Nankai University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nankai-Baidu Joint Laboratory, College of Computer Science, Nankai University, Tianjin, China","institution_ids":["https://openalex.org/I205237279","https://openalex.org/I98301712"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021782904","display_name":"Yingfeng Zheng","orcid":"https://orcid.org/0000-0002-0914-7864"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]},{"id":"https://openalex.org/I98301712","display_name":"Baidu (China)","ror":"https://ror.org/03vs3wt56","country_code":"CN","type":"company","lineage":["https://openalex.org/I98301712"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingfeng Zheng","raw_affiliation_strings":["Nankai-Baidu Joint Laboratory, College of Computer Science, Nankai University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nankai-Baidu Joint Laboratory, College of Computer Science, Nankai University, Tianjin, China","institution_ids":["https://openalex.org/I205237279","https://openalex.org/I98301712"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103055033","display_name":"Haonan Xie","orcid":"https://orcid.org/0000-0001-5623-2845"},"institutions":[{"id":"https://openalex.org/I150807315","display_name":"Guangxi University","ror":"https://ror.org/02c9qn167","country_code":"CN","type":"education","lineage":["https://openalex.org/I150807315"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haonan Xie","raw_affiliation_strings":["Institute of Artificial Intelligence, School of Electrical Engineering, Guangxi University, Nanning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence, School of Electrical Engineering, Guangxi University, Nanning, China","institution_ids":["https://openalex.org/I150807315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101194582","display_name":"Huidong Ma","orcid":null},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]},{"id":"https://openalex.org/I98301712","display_name":"Baidu (China)","ror":"https://ror.org/03vs3wt56","country_code":"CN","type":"company","lineage":["https://openalex.org/I98301712"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huidong Ma","raw_affiliation_strings":["Nankai-Baidu Joint Laboratory, College of Computer Science, Nankai University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nankai-Baidu Joint Laboratory, College of Computer Science, Nankai University, Tianjin, China","institution_ids":["https://openalex.org/I205237279","https://openalex.org/I98301712"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100390120","display_name":"Xiaoguang Liu","orcid":"https://orcid.org/0000-0002-9010-3278"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]},{"id":"https://openalex.org/I98301712","display_name":"Baidu (China)","ror":"https://ror.org/03vs3wt56","country_code":"CN","type":"company","lineage":["https://openalex.org/I98301712"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoguang Liu","raw_affiliation_strings":["Nankai-Baidu Joint Laboratory, College of Computer Science, Nankai University, Tianjin, China. liuxg@nbjl.nankai.edu.cn","Nankai-Baidu Joint Laboratory, College of Computer Science, Nankai University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nankai-Baidu Joint Laboratory, College of Computer Science, Nankai University, Tianjin, China. liuxg@nbjl.nankai.edu.cn","institution_ids":["https://openalex.org/I205237279"]},{"raw_affiliation_string":"Nankai-Baidu Joint Laboratory, College of Computer Science, Nankai University, Tianjin, China","institution_ids":["https://openalex.org/I205237279","https://openalex.org/I98301712"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100367320","display_name":"Gang Wang","orcid":"https://orcid.org/0000-0001-7712-8115"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]},{"id":"https://openalex.org/I98301712","display_name":"Baidu (China)","ror":"https://ror.org/03vs3wt56","country_code":"CN","type":"company","lineage":["https://openalex.org/I98301712"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gang Wang","raw_affiliation_strings":["Nankai-Baidu Joint Laboratory, College of Computer Science, Nankai University, Tianjin, China. adairmillersh@gmail.com","Nankai-Baidu Joint Laboratory, College of Computer Science, Nankai University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nankai-Baidu Joint Laboratory, College of Computer Science, Nankai University, Tianjin, China. adairmillersh@gmail.com","institution_ids":["https://openalex.org/I205237279"]},{"raw_affiliation_string":"Nankai-Baidu Joint Laboratory, College of Computer Science, Nankai University, Tianjin, China","institution_ids":["https://openalex.org/I205237279","https://openalex.org/I98301712"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.3053,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.84705592,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"24","issue":"1","first_page":"454","last_page":"454"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.8396999835968018,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.8396999835968018,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.05939999967813492,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.030400000512599945,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7500163316726685},{"id":"https://openalex.org/keywords/compression-ratio","display_name":"Compression ratio","score":0.500227689743042},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.47663721442222595},{"id":"https://openalex.org/keywords/overhead","display_name":"Overhead (engineering)","score":0.4662894904613495},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.37972739338874817},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32325389981269836},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1992030143737793},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.18602591753005981},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10275468230247498}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7500163316726685},{"id":"https://openalex.org/C25797200","wikidata":"https://www.wikidata.org/wiki/Q828137","display_name":"Compression ratio","level":3,"score":0.500227689743042},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.47663721442222595},{"id":"https://openalex.org/C2779960059","wikidata":"https://www.wikidata.org/wiki/Q7113681","display_name":"Overhead (engineering)","level":2,"score":0.4662894904613495},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.37972739338874817},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32325389981269836},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1992030143737793},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.18602591753005981},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10275468230247498},{"id":"https://openalex.org/C171146098","wikidata":"https://www.wikidata.org/wiki/Q124192","display_name":"Automotive engineering","level":1,"score":0.0},{"id":"https://openalex.org/C511840579","wikidata":"https://www.wikidata.org/wiki/Q12757","display_name":"Internal combustion engine","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-023-05566-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05566-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05566-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38036969","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38036969","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10691058","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10691058","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10691058/pdf/12859_2023_Article_5566.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:1bc98b6a90b54fee85ab4eafd3217a09","is_oa":true,"landing_page_url":"https://doaj.org/article/1bc98b6a90b54fee85ab4eafd3217a09","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-15 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05566-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05566-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05566-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6499999761581421,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1454563993","display_name":null,"funder_award_id":"62272253","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2600338046","display_name":null,"funder_award_id":"62141412","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7931203216","display_name":null,"funder_award_id":"62272252","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320327522","display_name":"Guangxi University","ror":"https://ror.org/02c9qn167"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4389193849.pdf"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W645173616","https://openalex.org/W1931027898","https://openalex.org/W1965359119","https://openalex.org/W2085522429","https://openalex.org/W2114792961","https://openalex.org/W2131106408","https://openalex.org/W2145058650","https://openalex.org/W2153707226","https://openalex.org/W2166588423","https://openalex.org/W2491623630","https://openalex.org/W2538355508","https://openalex.org/W2764165465","https://openalex.org/W2899544675","https://openalex.org/W2905575949","https://openalex.org/W2922407406","https://openalex.org/W2951070849","https://openalex.org/W2983510300","https://openalex.org/W2985216442","https://openalex.org/W2994713233","https://openalex.org/W2998912266","https://openalex.org/W3169629261","https://openalex.org/W3172344398","https://openalex.org/W3185657184","https://openalex.org/W3203222421","https://openalex.org/W4220989595","https://openalex.org/W4235295823","https://openalex.org/W4280508214","https://openalex.org/W4319298371"],"related_works":["https://openalex.org/W2161302774","https://openalex.org/W4383723869","https://openalex.org/W4384298135","https://openalex.org/W4383722264","https://openalex.org/W2388481516","https://openalex.org/W3007688875","https://openalex.org/W1723410974","https://openalex.org/W3209669196","https://openalex.org/W2110517301","https://openalex.org/W3123970444"],"abstract_inverted_index":{"BACKGROUND:":[0],"Genomic":[1],"sequencing":[2,10,38,66,91,151,177],"reads":[3,12,27,48,68,80,152,178],"compressors":[4,28,105],"are":[5],"essential":[6],"for":[7,46,175],"balancing":[8],"high-throughput":[9],"short":[11,26,67,99],"generation":[13],"speed,":[14],"large-scale":[15,64],"genomic":[16,65],"data":[17,49,69,153],"sharing,":[18],"and":[19,33,61,78,96,103,109,115,128,164,180],"infrastructure":[20],"storage":[21,50,131,154,161,182],"expenditure.":[22],"However,":[23],"most":[24],"existing":[25],"rarely":[29],"utilize":[30],"big-memory":[31,144],"systems":[32],"duplicative":[34],"information":[35],"between":[36],"diverse":[37],"files":[39],"to":[40],"achieve":[41,111],"a":[42,63,172,191],"higher":[43],"compression":[44,55,70,119,146,179],"ratio":[45,56,120],"conserving":[47],"space.":[51,183],"RESULTS:":[52],"We":[53],"employ":[54],"as":[57],"the":[58,101,136,150,159],"optimization":[59],"objective":[60],"propose":[62],"optimizer,":[71],"named":[72],"PMFFRC,":[73,85],"through":[74],"novelty":[75],"memory":[76],"modeling":[77],"redundant":[79],"clustering":[81],"technologies.":[82],"By":[83],"cascading":[84],"in":[86,190],"982":[87],"GB":[88,95],"fastq":[89],"format":[90],"data,":[92],"with":[93,135],"274":[94],"3.3":[97],"billion":[98],"reads,":[100],"state-of-the-art":[102],"reference-free":[104],"HARC,":[106],"SPRING,":[107],"Mstcom,":[108],"FastqCLS":[110],"77.89%,":[112],"77.56%,":[113],"73.51%,":[114],"29.36%":[116],"average":[117],"maximum":[118],"gains,":[121],"respectively.":[122],"PMFFRC":[123,141,186],"saves":[124],"39.41%,":[125],"41.62%,":[126],"40.99%,":[127],"20.19%":[129],"of":[130,145],"space":[132,155],"sizes":[133],"compared":[134],"four":[137],"unoptimized":[138],"compressors.":[139],"CONCLUSIONS:":[140],"rational":[142],"usage":[143],"server,":[147],"effectively":[148],"saving":[149,181],"sizes,":[156],"which":[157],"relieves":[158],"basic":[160],"facilities":[162],"costs":[163],"community":[165],"sharing":[166],"transmitting":[167],"overhead.":[168],"Our":[169],"work":[170],"furnishes":[171],"novel":[173],"solution":[174],"improving":[176],"The":[184],"proposed":[185],"algorithm":[187],"is":[188],"packaged":[189],"same-name":[192],"Linux":[193],"toolkit,":[194],"available":[195],"un-limited":[196],"at":[197],"https://github.com/fahaihi/PMFFRC":[198],".":[199]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
