{"id":"https://openalex.org/W4388879760","doi":"https://doi.org/10.1186/s12859-023-05550-3","title":"Relating mutational signature exposures to clinical data in cancers via signeR 2.0","display_name":"Relating mutational signature exposures to clinical data in cancers via signeR 2.0","publication_year":2023,"publication_date":"2023-11-21","ids":{"openalex":"https://openalex.org/W4388879760","doi":"https://doi.org/10.1186/s12859-023-05550-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/37990302"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05550-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05550-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05550-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05550-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087196517","display_name":"Rodrigo D. Drummond","orcid":"https://orcid.org/0000-0002-9000-8115"},"institutions":[{"id":"https://openalex.org/I3019035496","display_name":"AC Camargo Hospital","ror":"https://ror.org/03025ga79","country_code":"BR","type":"healthcare","lineage":["https://openalex.org/I3019035496"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Rodrigo D. Drummond","raw_affiliation_strings":["Laboratory of Computational Biology and Bioinformatics, CIPE/A.C.Camargo Cancer Center, S\u00e3o Paulo, S\u00e3o Paulo, 01508-010, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology and Bioinformatics, CIPE/A.C.Camargo Cancer Center, S\u00e3o Paulo, S\u00e3o Paulo, 01508-010, Brazil","institution_ids":["https://openalex.org/I3019035496"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081114432","display_name":"Alexandre Defelicibus","orcid":"https://orcid.org/0000-0002-3484-6317"},"institutions":[{"id":"https://openalex.org/I3019035496","display_name":"AC Camargo Hospital","ror":"https://ror.org/03025ga79","country_code":"BR","type":"healthcare","lineage":["https://openalex.org/I3019035496"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Alexandre Defelicibus","raw_affiliation_strings":["Laboratory of Computational Biology and Bioinformatics, CIPE/A.C.Camargo Cancer Center, S\u00e3o Paulo, S\u00e3o Paulo, 01508-010, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology and Bioinformatics, CIPE/A.C.Camargo Cancer Center, S\u00e3o Paulo, S\u00e3o Paulo, 01508-010, Brazil","institution_ids":["https://openalex.org/I3019035496"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066959801","display_name":"Mathilde Meyenberg","orcid":null},"institutions":[{"id":"https://openalex.org/I138211613","display_name":"Austrian Academy of Sciences","ror":"https://ror.org/03anc3s24","country_code":"AT","type":"government","lineage":["https://openalex.org/I138211613"]},{"id":"https://openalex.org/I4210127611","display_name":"CeMM Research Center for Molecular Medicine","ror":"https://ror.org/02z2dfb58","country_code":"AT","type":"facility","lineage":["https://openalex.org/I138211613","https://openalex.org/I4210127611"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Mathilde Meyenberg","raw_affiliation_strings":["CeMM Research Center for Molecular Medicine, Austrian Academy of Sciences, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CeMM Research Center for Molecular Medicine, Austrian Academy of Sciences, Vienna, Austria","institution_ids":["https://openalex.org/I4210127611","https://openalex.org/I138211613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048107289","display_name":"Renan Valieris","orcid":"https://orcid.org/0000-0002-8402-3175"},"institutions":[{"id":"https://openalex.org/I3019035496","display_name":"AC Camargo Hospital","ror":"https://ror.org/03025ga79","country_code":"BR","type":"healthcare","lineage":["https://openalex.org/I3019035496"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Renan Valieris","raw_affiliation_strings":["Laboratory of Computational Biology and Bioinformatics, CIPE/A.C.Camargo Cancer Center, S\u00e3o Paulo, S\u00e3o Paulo, 01508-010, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology and Bioinformatics, CIPE/A.C.Camargo Cancer Center, S\u00e3o Paulo, S\u00e3o Paulo, 01508-010, Brazil","institution_ids":["https://openalex.org/I3019035496"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041592879","display_name":"Emmanuel Dias\u2010Neto","orcid":"https://orcid.org/0000-0001-5670-8559"},"institutions":[{"id":"https://openalex.org/I3019035496","display_name":"AC Camargo Hospital","ror":"https://ror.org/03025ga79","country_code":"BR","type":"healthcare","lineage":["https://openalex.org/I3019035496"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Emmanuel Dias-Neto","raw_affiliation_strings":["Laboratory of Computational Biology and Bioinformatics, CIPE/A.C.Camargo Cancer Center, S\u00e3o Paulo, S\u00e3o Paulo, 01508-010, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology and Bioinformatics, CIPE/A.C.Camargo Cancer Center, S\u00e3o Paulo, S\u00e3o Paulo, 01508-010, Brazil","institution_ids":["https://openalex.org/I3019035496"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087670867","display_name":"Rafael Rosales","orcid":"https://orcid.org/0000-0002-7518-2975"},"institutions":[{"id":"https://openalex.org/I1331278255","display_name":"Universidade de Ribeir\u00e3o Preto","ror":"https://ror.org/00ey54k21","country_code":"BR","type":"education","lineage":["https://openalex.org/I1331278255"]},{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Rafael A. Rosales","raw_affiliation_strings":["Departamento de Computa\u00e7\u00e3o e Matem\u00e1tica, Universidade de S\u00e3o Paulo, Ribeir\u00e3o Preto, S\u00e3o Paulo, 14040-901, Brazil. rrosales@usp.br","Departamento de Computa\u00e7\u00e3o e Matem\u00e1tica, Universidade de S\u00e3o Paulo, Ribeir\u00e3o Preto, S\u00e3o Paulo, 14040-901, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Computa\u00e7\u00e3o e Matem\u00e1tica, Universidade de S\u00e3o Paulo, Ribeir\u00e3o Preto, S\u00e3o Paulo, 14040-901, Brazil. rrosales@usp.br","institution_ids":["https://openalex.org/I1331278255","https://openalex.org/I17974374"]},{"raw_affiliation_string":"Departamento de Computa\u00e7\u00e3o e Matem\u00e1tica, Universidade de S\u00e3o Paulo, Ribeir\u00e3o Preto, S\u00e3o Paulo, 14040-901, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036545708","display_name":"Israel Tojal da Silva","orcid":"https://orcid.org/0000-0002-4687-1499"},"institutions":[{"id":"https://openalex.org/I3019035496","display_name":"AC Camargo Hospital","ror":"https://ror.org/03025ga79","country_code":"BR","type":"healthcare","lineage":["https://openalex.org/I3019035496"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Israel Tojal da Silva","raw_affiliation_strings":["Laboratory of Computational Biology and Bioinformatics, CIPE/A.C.Camargo Cancer Center, S\u00e3o Paulo, S\u00e3o Paulo, 01508-010, Brazil. itojal@accamargo.org.br","Laboratory of Computational Biology and Bioinformatics, CIPE/A.C.Camargo Cancer Center, S\u00e3o Paulo, S\u00e3o Paulo, 01508-010, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology and Bioinformatics, CIPE/A.C.Camargo Cancer Center, S\u00e3o Paulo, S\u00e3o Paulo, 01508-010, Brazil. itojal@accamargo.org.br","institution_ids":["https://openalex.org/I3019035496"]},{"raw_affiliation_string":"Laboratory of Computational Biology and Bioinformatics, CIPE/A.C.Camargo Cancer Center, S\u00e3o Paulo, S\u00e3o Paulo, 01508-010, Brazil","institution_ids":["https://openalex.org/I3019035496"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5087670867"],"corresponding_institution_ids":["https://openalex.org/I1331278255","https://openalex.org/I17974374"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.4624,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.7464042,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"24","issue":"1","first_page":"439","last_page":"439"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.8560000061988831,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.8560000061988831,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11235","display_name":"Statistical Methods in Clinical Trials","score":0.02539999969303608,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10433","display_name":"Carcinogens and Genotoxicity Assessment","score":0.010200000368058681,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/signature","display_name":"Signature (topology)","score":0.5744502544403076},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5204627513885498},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4876667261123657},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.454115629196167},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31830698251724243},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2822149395942688},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13593131303787231},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07641962170600891},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.06600657105445862}],"concepts":[{"id":"https://openalex.org/C2779696439","wikidata":"https://www.wikidata.org/wiki/Q7512811","display_name":"Signature (topology)","level":2,"score":0.5744502544403076},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5204627513885498},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4876667261123657},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.454115629196167},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31830698251724243},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2822149395942688},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13593131303787231},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07641962170600891},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.06600657105445862},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-023-05550-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05550-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05550-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37990302","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37990302","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10664385","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10664385","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10664385/pdf/12859_2023_Article_5550.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:fe6c58cc23414074a850e822b9241467","is_oa":true,"landing_page_url":"https://doaj.org/article/fe6c58cc23414074a850e822b9241467","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-11 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05550-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05550-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05550-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4099999964237213,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G2669857951","display_name":null,"funder_award_id":"14/26897-0","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G4689391503","display_name":null,"funder_award_id":"2022/12991-0","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"}],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4388879760.pdf"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1570622790","https://openalex.org/W2008255210","https://openalex.org/W2015049472","https://openalex.org/W2126547130","https://openalex.org/W2176435849","https://openalex.org/W2276335691","https://openalex.org/W2512945549","https://openalex.org/W2898789672","https://openalex.org/W2946230264","https://openalex.org/W2951181641","https://openalex.org/W3006132030","https://openalex.org/W3123334105","https://openalex.org/W3133283981","https://openalex.org/W3163530705","https://openalex.org/W3186397855","https://openalex.org/W3198053574","https://openalex.org/W4281490101","https://openalex.org/W4283700563","https://openalex.org/W4297312457","https://openalex.org/W6602019454"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2151865869"],"abstract_inverted_index":{"BACKGROUND:":[0],"Cancer":[1],"is":[2,15,31,155,166,184],"a":[3,32,41,78,88,99,130,167],"collection":[4],"of":[5,11,35,64,71,74,77,80,93,102,111,118,124,147],"diseases":[6],"caused":[7],"by":[8,17],"the":[9,56,72,103,109,116,135,145,158,191],"deregulation":[10],"cell":[12],"processes,":[13],"which":[14,107,154],"triggered":[16],"somatic":[18,25],"mutations.":[19],"The":[20],"search":[21],"for":[22,160],"patterns":[23],"in":[24,44,140,157],"mutations,":[26],"known":[27],"as":[28],"mutational":[29],"signatures,":[30],"growing":[33],"field":[34],"study":[36],"that":[37],"has":[38],"already":[39],"become":[40],"useful":[42],"tool":[43,169],"oncology.":[45],"Several":[46],"algorithms":[47],"have":[48],"been":[49],"proposed":[50],"to":[51,91,114,121,170],"perform":[52],"one":[53,76],"or":[54,150,180],"both":[55,92,176],"following":[57],"two":[58],"tasks:":[59],"(1)":[60],"de":[61,178],"novo":[62,179],"estimation":[63,70],"signatures":[65],"and":[66,138,172,183],"their":[67],"exposures,":[68],"(2)":[69],"exposures":[73,120],"each":[75],"set":[79],"pre-defined":[81],"signatures.":[82],"RESULTS:":[83],"Our":[84],"group":[85],"developed":[86,133],"signeR,":[87],"Bayesian":[89],"approach":[90],"these":[94],"tasks.":[95],"Here":[96],"we":[97],"present":[98],"new":[100],"version":[101,143],"software,":[104],"signeR":[105,127,164],"2.0,":[106],"extends":[108],"possibilities":[110],"previous":[112],"analyses":[113,182],"explore":[115,173],"relation":[117],"signature":[119],"other":[122],"data":[123,149],"clinical":[125],"relevance.":[126],"2.0":[128,165],"includes":[129],"user-friendly":[131],"interface":[132],"using":[134],"R-Shiny":[136],"framework":[137],"improvements":[139],"performance.":[141],"This":[142],"allows":[144],"analysis":[146],"submitted":[148],"public":[151],"TCGA":[152],"data,":[153,175],"embedded":[156],"package":[159,188],"easy":[161],"access.":[162],"CONCLUSION:":[163],"valuable":[168],"generate":[171],"exposure":[174],"from":[177],"fitting":[181],"an":[185],"open-source":[186],"R":[187],"available":[189],"through":[190],"Bioconductor":[192],"project":[193],"at":[194],"(":[195],"https://doi.org/10.18129/B9.bioc.signeR":[196],").":[197]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
