{"id":"https://openalex.org/W4389476584","doi":"https://doi.org/10.1186/s12859-023-05529-0","title":"Hierarchical classification-based pan-cancer methylation analysis to classify primary cancer","display_name":"Hierarchical classification-based pan-cancer methylation analysis to classify primary cancer","publication_year":2023,"publication_date":"2023-12-08","ids":{"openalex":"https://openalex.org/W4389476584","doi":"https://doi.org/10.1186/s12859-023-05529-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/38066424"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05529-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05529-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05529-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05529-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057491706","display_name":"Youpeng Yang","orcid":"https://orcid.org/0000-0003-2248-8679"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Youpeng Yang","raw_affiliation_strings":["Medicine School, Sun Yat-sen University, Shenzhen, 518107, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medicine School, Sun Yat-sen University, Shenzhen, 518107, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067835026","display_name":"Qiuhong Zeng","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Qiuhong Zeng","raw_affiliation_strings":["Geneplus-Shenzhen Institute, Shenzhen, 518118, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Geneplus-Shenzhen Institute, Shenzhen, 518118, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039599756","display_name":"Gaotong Liu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gaotong Liu","raw_affiliation_strings":["Geneplus-Shenzhen Institute, Shenzhen, 518118, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Geneplus-Shenzhen Institute, Shenzhen, 518118, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037714997","display_name":"Shiyao Zheng","orcid":"https://orcid.org/0009-0003-3555-1806"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shiyao Zheng","raw_affiliation_strings":["Medicine School, Sun Yat-sen University, Shenzhen, 518107, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medicine School, Sun Yat-sen University, Shenzhen, 518107, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039204637","display_name":"Tianyang Luo","orcid":null},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianyang Luo","raw_affiliation_strings":["Medicine School, Sun Yat-sen University, Shenzhen, 518107, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medicine School, Sun Yat-sen University, Shenzhen, 518107, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100513842","display_name":"Yibin Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yibin Guo","raw_affiliation_strings":["Medicine School, Sun Yat-sen University, Shenzhen, 518107, China. guoyibin@mail.sysu.edu.cn","Medicine School, Sun Yat-sen University, Shenzhen, 518107, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medicine School, Sun Yat-sen University, Shenzhen, 518107, China. guoyibin@mail.sysu.edu.cn","institution_ids":["https://openalex.org/I157773358"]},{"raw_affiliation_string":"Medicine School, Sun Yat-sen University, Shenzhen, 518107, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109205285","display_name":"Jia Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I159948400","display_name":"Jinan University","ror":"https://ror.org/02xe5ns62","country_code":"CN","type":"education","lineage":["https://openalex.org/I159948400"]},{"id":"https://openalex.org/I4210153930","display_name":"Guangdong Provincial People's Hospital","ror":"https://ror.org/045kpgw45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153930"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jia Tang","raw_affiliation_strings":["NHC Key Laboratory of Male Reproduction and Genetics, Guangdong Provincial Reproductive Science Institute (Guangdong Provincial Fertility Hospital), Guangzhou, 510062, China. tony2081129@163.com","School of Medicine, Jinan University, Guangzhou, 510632, China. tony2081129@163.com","NHC Key Laboratory of Male Reproduction and Genetics, Guangdong Provincial Reproductive Science Institute (Guangdong Provincial Fertility Hospital), Guangzhou, 510062, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NHC Key Laboratory of Male Reproduction and Genetics, Guangdong Provincial Reproductive Science Institute (Guangdong Provincial Fertility Hospital), Guangzhou, 510062, China. tony2081129@163.com","institution_ids":["https://openalex.org/I4210153930"]},{"raw_affiliation_string":"School of Medicine, Jinan University, Guangzhou, 510632, China. tony2081129@163.com","institution_ids":["https://openalex.org/I159948400"]},{"raw_affiliation_string":"NHC Key Laboratory of Male Reproduction and Genetics, Guangdong Provincial Reproductive Science Institute (Guangdong Provincial Fertility Hospital), Guangzhou, 510062, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102826088","display_name":"Yi Huang","orcid":"https://orcid.org/0009-0005-1655-8679"},"institutions":[{"id":"https://openalex.org/I4210160476","display_name":"Shenzhen Genoimmune Medical Institute","ror":"https://ror.org/05avj5s69","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210160476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Huang","raw_affiliation_strings":["Geneplus-Shenzhen Institute, Shenzhen, 518118, China. huangyi@geneplus.org.cn","Geneplus-Shenzhen Institute, Shenzhen, 518118, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Geneplus-Shenzhen Institute, Shenzhen, 518118, China. huangyi@geneplus.org.cn","institution_ids":["https://openalex.org/I4210160476"]},{"raw_affiliation_string":"Geneplus-Shenzhen Institute, Shenzhen, 518118, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5109205285"],"corresponding_institution_ids":["https://openalex.org/I159948400","https://openalex.org/I4210153930"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.2712,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.79925926,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"24","issue":"1","first_page":"465","last_page":"465"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5282145142555237},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5266528129577637},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5246206521987915},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.46828410029411316},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.44004014134407043},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.4395039677619934},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3697888255119324},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2904118299484253},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16618797183036804},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1372210681438446}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5282145142555237},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5266528129577637},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5246206521987915},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.46828410029411316},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44004014134407043},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.4395039677619934},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3697888255119324},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2904118299484253},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16618797183036804},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1372210681438446}],"mesh":[{"descriptor_ui":"D000081122","descriptor_name":"Epigenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081122","descriptor_name":"Epigenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081122","descriptor_name":"Epigenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081122","descriptor_name":"Epigenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008745","descriptor_name":"Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008745","descriptor_name":"Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008745","descriptor_name":"Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008745","descriptor_name":"Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-023-05529-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05529-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05529-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38066424","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38066424","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10709847","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10709847","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10709847/pdf/12859_2023_Article_5529.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:716d0e747c9b4c8fbb7284abdaf37efc","is_oa":true,"landing_page_url":"https://doaj.org/article/716d0e747c9b4c8fbb7284abdaf37efc","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-14 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05529-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05529-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05529-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"No poverty","score":0.7200000286102295,"id":"https://metadata.un.org/sdg/1"}],"awards":[{"id":"https://openalex.org/G1453588611","display_name":null,"funder_award_id":"2022A1515220204","funder_id":"https://openalex.org/F4320337111","funder_display_name":"Basic and Applied Basic Research Foundation of Guangdong Province"},{"id":"https://openalex.org/G5664913516","display_name":null,"funder_award_id":"201905010003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8705453616","display_name":null,"funder_award_id":"82270600","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321160","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71"},{"id":"https://openalex.org/F4320337111","display_name":"Basic and Applied Basic Research Foundation of Guangdong Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389476584.pdf"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1987561568","https://openalex.org/W1987971958","https://openalex.org/W2040257851","https://openalex.org/W2056051734","https://openalex.org/W2096192437","https://openalex.org/W2096330673","https://openalex.org/W2121417064","https://openalex.org/W2151614814","https://openalex.org/W2156665896","https://openalex.org/W2507892764","https://openalex.org/W2593934358","https://openalex.org/W2663574681","https://openalex.org/W2744794223","https://openalex.org/W2787816121","https://openalex.org/W2885066998","https://openalex.org/W2889326414","https://openalex.org/W2904840018","https://openalex.org/W2911964244","https://openalex.org/W2945528112","https://openalex.org/W2948371032","https://openalex.org/W2950989394","https://openalex.org/W3000293556","https://openalex.org/W3005188734","https://openalex.org/W3009737049","https://openalex.org/W3014921497","https://openalex.org/W3024840842","https://openalex.org/W3028304854","https://openalex.org/W3038829532","https://openalex.org/W3047302266","https://openalex.org/W3122927608","https://openalex.org/W3123940477","https://openalex.org/W3186318400","https://openalex.org/W3213732618","https://openalex.org/W4210642490","https://openalex.org/W4238823463"],"related_works":["https://openalex.org/W1455488868","https://openalex.org/W2902329290","https://openalex.org/W2052355316","https://openalex.org/W2046964473","https://openalex.org/W2107880877","https://openalex.org/W2151182744","https://openalex.org/W2024490794","https://openalex.org/W2221018455","https://openalex.org/W1998349112","https://openalex.org/W2054863651"],"abstract_inverted_index":{"Hierarchical":[0],"classification":[1,13,108,224,232,240,251],"offers":[2],"a":[3,168,222],"more":[4],"specific":[5],"categorization":[6],"of":[7,32,50,55,71,117,140,151,160,184,225],"data":[8,76],"and":[9,21,52,81,95,110,123,166,205,248],"breaks":[10],"down":[11],"large":[12],"problems":[14],"into":[15,229],"subproblems,":[16],"providing":[17],"improved":[18],"prediction":[19],"accuracy":[20,150,183],"predictive":[22,189],"power":[23],"for":[24,129,191],"undefined":[25],"categories,":[26],"while":[27],"also":[28],"mitigating":[29],"the":[30,48,53,62,69,96,107,144,203,242],"impact":[31],"poor-quality":[33],"data.":[34],"Despite":[35],"these":[36],"advantages,":[37],"its":[38,196],"application":[39],"in":[40,143,202],"predicting":[41],"primary":[42,215],"cancer":[43,79,162,193,216,227,238,250],"is":[44],"rare.":[45],"To":[46],"leverage":[47],"similarity":[49],"cancers":[51],"specificity":[54],"methylation":[56,75,218],"patterns":[57],"among":[58],"them,":[59],"we":[60],"developed":[61],"Cancer":[63,91],"Hierarchy":[64],"Classification":[65],"Tool":[66],"(CHCT)":[67],"using":[68,115,170],"idea":[70],"hierarchical":[72,239],"classification,":[73],"with":[74,147,177],"from":[77,86,164],"30":[78,226],"types":[80,194,228],"8239":[82],"methylome":[83],"samples":[84,163],"downloaded":[85],"publicly":[87],"available":[88],"databases":[89],"(The":[90],"Genome":[92],"Atlas":[93],"(TCGA)":[94],"Gene":[97],"Expression":[98],"Omnibus":[99],"(GEO)).":[100],"We":[101,153],"used":[102],"unsupervised":[103],"clustering":[104],"to":[105,126,244],"divide":[106],"subproblems":[109],"screened":[111],"differentially":[112],"methylated":[113],"sites":[114],"Analysis":[116],"variance":[118],"(ANOVA)":[119],"test,":[120,122],"Tukey-kramer":[121],"Boruta":[124],"algorithms":[125],"construct":[127],"models":[128],"each":[130],"classifier":[131,198],"module.":[132],"After":[133],"validation,":[134],"CHCT":[135,187,211],"accurately":[136],"classified":[137],"1568":[138],"out":[139],"1660":[141],"cases":[142],"test":[145],"set,":[146],"an":[148,156,246],"average":[149,182],"94.46%.":[152],"further":[154],"curated":[155],"independent":[157],"validation":[158],"cohort":[159],"677":[161],"GEO":[165],"assigned":[167],"diagnosis":[169],"CHCT,":[171],"which":[172],"showed":[173],"high":[174,179],"diagnostic":[175],"potential":[176,243],"generally":[178],"accuracies":[180],"(an":[181],"91.40%).":[185],"Moreover,":[186],"demonstrates":[188],"capability":[190],"additional":[192],"beyond":[195],"original":[197],"scope":[199],"as":[200],"demonstrated":[201],"medulloblastoma":[204],"pituitary":[206],"tumor":[207],"datasets.":[208],"In":[209],"summary,":[210],"can":[212],"hierarchically":[213],"classify":[214],"by":[217,220],"profile,":[219],"splitting":[221],"large-scale":[223],"ten":[230],"smaller":[231],"problems.":[233],"These":[234],"results":[235],"indicate":[236],"that":[237],"has":[241],"be":[245],"accurate":[247],"robust":[249],"method.":[252]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":5}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
