{"id":"https://openalex.org/W4386712359","doi":"https://doi.org/10.1186/s12859-023-05445-3","title":"A systematic comparison of human mitochondrial genome assembly tools","display_name":"A systematic comparison of human mitochondrial genome assembly tools","publication_year":2023,"publication_date":"2023-09-13","ids":{"openalex":"https://openalex.org/W4386712359","doi":"https://doi.org/10.1186/s12859-023-05445-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/37704952"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05445-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05445-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05445-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05445-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056464758","display_name":"Nirmal Singh Mahar","orcid":"https://orcid.org/0000-0001-6296-0494"},"institutions":[{"id":"https://openalex.org/I68891433","display_name":"Indian Institute of Technology Delhi","ror":"https://ror.org/049tgcd06","country_code":"IN","type":"education","lineage":["https://openalex.org/I68891433"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Nirmal Singh Mahar","raw_affiliation_strings":["Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology, New Delhi, 110016, India"],"affiliations":[{"raw_affiliation_string":"Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology, New Delhi, 110016, India","institution_ids":["https://openalex.org/I68891433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048014089","display_name":"Rohit Satyam","orcid":"https://orcid.org/0000-0002-9311-4992"},"institutions":[{"id":"https://openalex.org/I59475050","display_name":"Jamia Millia Islamia","ror":"https://ror.org/00pnhhv55","country_code":"IN","type":"education","lineage":["https://openalex.org/I59475050"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Rohit Satyam","raw_affiliation_strings":["Jamia Millia Islamia, Jamia Nagar, Okhla, New Delhi, 110025, India"],"affiliations":[{"raw_affiliation_string":"Jamia Millia Islamia, Jamia Nagar, Okhla, New Delhi, 110025, India","institution_ids":["https://openalex.org/I59475050"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029172082","display_name":"Durai Sundar","orcid":null},"institutions":[{"id":"https://openalex.org/I68891433","display_name":"Indian Institute of Technology Delhi","ror":"https://ror.org/049tgcd06","country_code":"IN","type":"education","lineage":["https://openalex.org/I68891433"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Durai Sundar","raw_affiliation_strings":["Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology, New Delhi, 110016, India"],"affiliations":[{"raw_affiliation_string":"Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology, New Delhi, 110016, India","institution_ids":["https://openalex.org/I68891433"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025356846","display_name":"Ishaan Gupta","orcid":"https://orcid.org/0000-0001-8934-9919"},"institutions":[{"id":"https://openalex.org/I64295750","display_name":"Indian Institute of Technology Indore","ror":"https://ror.org/01hhf7w52","country_code":"IN","type":"education","lineage":["https://openalex.org/I64295750"]},{"id":"https://openalex.org/I68891433","display_name":"Indian Institute of Technology Delhi","ror":"https://ror.org/049tgcd06","country_code":"IN","type":"education","lineage":["https://openalex.org/I68891433"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ishaan Gupta","raw_affiliation_strings":["Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology, New Delhi, 110016, India. Ishaan.Gupta@dbeb.iitd.ac.in","Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology, New Delhi, 110016, India"],"affiliations":[{"raw_affiliation_string":"Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology, New Delhi, 110016, India. Ishaan.Gupta@dbeb.iitd.ac.in","institution_ids":["https://openalex.org/I68891433","https://openalex.org/I64295750"]},{"raw_affiliation_string":"Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology, New Delhi, 110016, India","institution_ids":["https://openalex.org/I68891433"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5056464758"],"corresponding_institution_ids":["https://openalex.org/I68891433"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7848,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.7355809,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"24","issue":"1","first_page":"341","last_page":"341"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8182039260864258},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6645581722259521},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6291822791099548},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.6164515614509583},{"id":"https://openalex.org/keywords/mitochondrial-dna","display_name":"Mitochondrial DNA","score":0.5869039297103882},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4456513524055481},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4273843467235565},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.42494091391563416},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.42183881998062134},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3802843987941742}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8182039260864258},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6645581722259521},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6291822791099548},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.6164515614509583},{"id":"https://openalex.org/C24586158","wikidata":"https://www.wikidata.org/wiki/Q27075","display_name":"Mitochondrial DNA","level":3,"score":0.5869039297103882},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4456513524055481},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4273843467235565},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.42494091391563416},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.42183881998062134},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3802843987941742}],"mesh":[{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008928","descriptor_name":"Mitochondria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008928","descriptor_name":"Mitochondria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008928","descriptor_name":"Mitochondria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054629","descriptor_name":"Genome, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054629","descriptor_name":"Genome, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054629","descriptor_name":"Genome, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-023-05445-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05445-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05445-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37704952","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37704952","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10498642","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10498642","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10498642/pdf/12859_2023_Article_5445.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:29d7cffb0bf64ee49e31f9f39901a535","is_oa":true,"landing_page_url":"https://doaj.org/article/29d7cffb0bf64ee49e31f9f39901a535","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-19 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05445-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05445-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05445-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7","score":0.4300000071525574}],"awards":[{"id":"https://openalex.org/G3047375522","display_name":null,"funder_award_id":"BT/GenomeIndia/2018","funder_id":"https://openalex.org/F4320320717","funder_display_name":"Department of Biotechnology, Ministry of Science and Technology, India"},{"id":"https://openalex.org/G707059429","display_name":null,"funder_award_id":"MFIRP","funder_id":"https://openalex.org/F4320324473","funder_display_name":"Indian Institute of Technology Delhi"}],"funders":[{"id":"https://openalex.org/F4320320717","display_name":"Department of Biotechnology, Ministry of Science and Technology, India","ror":"https://ror.org/03tjsyq23"},{"id":"https://openalex.org/F4320324473","display_name":"Indian Institute of Technology Delhi","ror":"https://ror.org/049tgcd06"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4386712359.pdf"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W1546375972","https://openalex.org/W1786673882","https://openalex.org/W1924760575","https://openalex.org/W1973231394","https://openalex.org/W1981986933","https://openalex.org/W1990210818","https://openalex.org/W2005581687","https://openalex.org/W2011694768","https://openalex.org/W2025617863","https://openalex.org/W2028270439","https://openalex.org/W2037764264","https://openalex.org/W2040484749","https://openalex.org/W2072397420","https://openalex.org/W2081536130","https://openalex.org/W2085525886","https://openalex.org/W2102619694","https://openalex.org/W2107772251","https://openalex.org/W2109291482","https://openalex.org/W2110676557","https://openalex.org/W2115688047","https://openalex.org/W2137756176","https://openalex.org/W2142404405","https://openalex.org/W2146112039","https://openalex.org/W2150660476","https://openalex.org/W2166664098","https://openalex.org/W2191690548","https://openalex.org/W2339839936","https://openalex.org/W2535995078","https://openalex.org/W2569532489","https://openalex.org/W2724584347","https://openalex.org/W2767590279","https://openalex.org/W2769431800","https://openalex.org/W2784788330","https://openalex.org/W2789843538","https://openalex.org/W2884944393","https://openalex.org/W2888282377","https://openalex.org/W2902188679","https://openalex.org/W2950509696","https://openalex.org/W2951624434","https://openalex.org/W2989806887","https://openalex.org/W3004462687","https://openalex.org/W3005583919","https://openalex.org/W3007172120","https://openalex.org/W3035897333","https://openalex.org/W3084201551","https://openalex.org/W3090978739","https://openalex.org/W3091292540","https://openalex.org/W3104441060","https://openalex.org/W3130782122","https://openalex.org/W3132911001","https://openalex.org/W4200365131","https://openalex.org/W4200456283","https://openalex.org/W4210652211","https://openalex.org/W4220697025","https://openalex.org/W4220999759","https://openalex.org/W4224278121","https://openalex.org/W4291306567","https://openalex.org/W4315707327","https://openalex.org/W4323806139","https://openalex.org/W6676553709","https://openalex.org/W6677112447","https://openalex.org/W6684732452","https://openalex.org/W6756400409","https://openalex.org/W6795410112","https://openalex.org/W6901675077"],"related_works":["https://openalex.org/W2247766769","https://openalex.org/W2187917240","https://openalex.org/W2295325708","https://openalex.org/W2395068850","https://openalex.org/W1989130879","https://openalex.org/W2366650996","https://openalex.org/W1544691147","https://openalex.org/W1966558370","https://openalex.org/W2372339860","https://openalex.org/W2092969717"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-03-14T08:43:22.919905","created_date":"2025-10-10T00:00:00"}