{"id":"https://openalex.org/W4386620529","doi":"https://doi.org/10.1186/s12859-023-05441-7","title":"HMCDA: a novel method based on the heterogeneous graph neural network and metapath for circRNA-disease associations prediction","display_name":"HMCDA: a novel method based on the heterogeneous graph neural network and metapath for circRNA-disease associations prediction","publication_year":2023,"publication_date":"2023-09-11","ids":{"openalex":"https://openalex.org/W4386620529","doi":"https://doi.org/10.1186/s12859-023-05441-7","pmid":"https://pubmed.ncbi.nlm.nih.gov/37697297"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05441-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05441-7","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-023-05441-7.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-023-05441-7.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062585318","display_name":"Shiyang Liang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210094623","display_name":"Jiuquan Iron & Steel (China)","ror":"https://ror.org/00mgrqp66","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210094623"]},{"id":"https://openalex.org/I4210113480","display_name":"Mohamed bin Zayed University of Artificial Intelligence","ror":"https://ror.org/0258gkt32","country_code":"AE","type":"education","lineage":["https://openalex.org/I4210113480"]},{"id":"https://openalex.org/I4210154136","display_name":"Tang Du Hospital","ror":"https://ror.org/04yvdan45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210154136"]}],"countries":["AE","CN"],"is_corresponding":true,"raw_author_name":"Shiyang Liang","raw_affiliation_strings":["Department of Gastroenterology, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China","Department of Internal Medicine, The No. 944 Hospital of Joint Logistic Support Force of PLA, Xiongguan Road, Jiuquan, China","Department of Machine Learning, Mohamed bin Zayed University of Artificial Intelligence, Abu Dhabi, United Arab Emirates"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China","institution_ids":["https://openalex.org/I4210154136"]},{"raw_affiliation_string":"Department of Internal Medicine, The No. 944 Hospital of Joint Logistic Support Force of PLA, Xiongguan Road, Jiuquan, China","institution_ids":["https://openalex.org/I4210094623"]},{"raw_affiliation_string":"Department of Machine Learning, Mohamed bin Zayed University of Artificial Intelligence, Abu Dhabi, United Arab Emirates","institution_ids":["https://openalex.org/I4210113480"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100781720","display_name":"Siwei Liu","orcid":"https://orcid.org/0000-0002-7326-2883"},"institutions":[{"id":"https://openalex.org/I4210113480","display_name":"Mohamed bin Zayed University of Artificial Intelligence","ror":"https://ror.org/0258gkt32","country_code":"AE","type":"education","lineage":["https://openalex.org/I4210113480"]}],"countries":["AE"],"is_corresponding":false,"raw_author_name":"Siwei Liu","raw_affiliation_strings":["Department of Machine Learning, Mohamed bin Zayed University of Artificial Intelligence, Abu Dhabi, United Arab Emirates"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Machine Learning, Mohamed bin Zayed University of Artificial Intelligence, Abu Dhabi, United Arab Emirates","institution_ids":["https://openalex.org/I4210113480"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112998679","display_name":"Junliang Song","orcid":null},"institutions":[{"id":"https://openalex.org/I4210154136","display_name":"Tang Du Hospital","ror":"https://ror.org/04yvdan45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210154136"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junliang Song","raw_affiliation_strings":["Department of Gastroenterology, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China","institution_ids":["https://openalex.org/I4210154136"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070461337","display_name":"Qiang Lin","orcid":"https://orcid.org/0000-0001-9111-609X"},"institutions":[{"id":"https://openalex.org/I4210154136","display_name":"Tang Du Hospital","ror":"https://ror.org/04yvdan45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210154136"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang Lin","raw_affiliation_strings":["Department of Gastroenterology, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China","institution_ids":["https://openalex.org/I4210154136"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101833317","display_name":"Shihong Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I4210154136","display_name":"Tang Du Hospital","ror":"https://ror.org/04yvdan45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210154136"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shihong Zhao","raw_affiliation_strings":["Department of Respiratory Medicine, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Respiratory Medicine, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China","institution_ids":["https://openalex.org/I4210154136"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112998680","display_name":"Shuaixin Li","orcid":null},"institutions":[{"id":"https://openalex.org/I4210154136","display_name":"Tang Du Hospital","ror":"https://ror.org/04yvdan45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210154136"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuaixin Li","raw_affiliation_strings":["Department of Gastroenterology, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China","institution_ids":["https://openalex.org/I4210154136"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100462971","display_name":"Jiahui Li","orcid":"https://orcid.org/0000-0003-4817-220X"},"institutions":[{"id":"https://openalex.org/I4210154136","display_name":"Tang Du Hospital","ror":"https://ror.org/04yvdan45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210154136"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiahui Li","raw_affiliation_strings":["Department of Gastroenterology, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China","institution_ids":["https://openalex.org/I4210154136"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060335069","display_name":"Shangsong Liang","orcid":"https://orcid.org/0000-0003-1625-2168"},"institutions":[{"id":"https://openalex.org/I4210094623","display_name":"Jiuquan Iron & Steel (China)","ror":"https://ror.org/00mgrqp66","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210094623"]},{"id":"https://openalex.org/I4210113480","display_name":"Mohamed bin Zayed University of Artificial Intelligence","ror":"https://ror.org/0258gkt32","country_code":"AE","type":"education","lineage":["https://openalex.org/I4210113480"]},{"id":"https://openalex.org/I4210154136","display_name":"Tang Du Hospital","ror":"https://ror.org/04yvdan45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210154136"]}],"countries":["AE","CN"],"is_corresponding":false,"raw_author_name":"Shangsong Liang","raw_affiliation_strings":["Department of Gastroenterology, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China","Department of Internal Medicine, The No. 944 Hospital of Joint Logistic Support Force of PLA, Xiongguan Road, Jiuquan, China","Department of Machine Learning, Mohamed bin Zayed University of Artificial Intelligence, Abu Dhabi, United Arab Emirates"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China","institution_ids":["https://openalex.org/I4210154136"]},{"raw_affiliation_string":"Department of Internal Medicine, The No. 944 Hospital of Joint Logistic Support Force of PLA, Xiongguan Road, Jiuquan, China","institution_ids":["https://openalex.org/I4210094623"]},{"raw_affiliation_string":"Department of Machine Learning, Mohamed bin Zayed University of Artificial Intelligence, Abu Dhabi, United Arab Emirates","institution_ids":["https://openalex.org/I4210113480"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100670459","display_name":"Jingjie Wang","orcid":"https://orcid.org/0000-0002-2192-7193"},"institutions":[{"id":"https://openalex.org/I4210154136","display_name":"Tang Du Hospital","ror":"https://ror.org/04yvdan45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210154136"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingjie Wang","raw_affiliation_strings":["Department of Gastroenterology, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China. Jingjie@fmmu.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology, Tangdu Hospital, Air Force Medical University, Xinsi Road, Xi'an, China. Jingjie@fmmu.edu.cn","institution_ids":["https://openalex.org/I4210154136"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5062585318"],"corresponding_institution_ids":["https://openalex.org/I4210094623","https://openalex.org/I4210113480","https://openalex.org/I4210154136"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.9273,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.86174967,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"24","issue":"1","first_page":"335","last_page":"335"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9876000285148621,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/circular-rna","display_name":"Circular RNA","score":0.6337459087371826},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5539698004722595},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5458141565322876},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5203675627708435},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5001401901245117},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4903383255004883},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.4389963448047638},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.34440878033638},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25375425815582275},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1706099808216095},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1698499619960785},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16592583060264587},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.148310124874115},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.0946262776851654},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.06651794910430908}],"concepts":[{"id":"https://openalex.org/C2775893923","wikidata":"https://www.wikidata.org/wiki/Q17113455","display_name":"Circular RNA","level":4,"score":0.6337459087371826},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5539698004722595},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5458141565322876},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5203675627708435},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5001401901245117},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4903383255004883},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.4389963448047638},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.34440878033638},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25375425815582275},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1706099808216095},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1698499619960785},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16592583060264587},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.148310124874115},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0946262776851654},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.06651794910430908}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-023-05441-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05441-7","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-023-05441-7.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37697297","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37697297","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10494331","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10494331","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10494331/pdf/12859_2023_Article_5441.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:aura.abdn.ac.uk:2164/25327","is_oa":false,"landing_page_url":"https://hdl.handle.net/2164/25327","pdf_url":null,"source":{"id":"https://openalex.org/S4306400966","display_name":"Aberdeen University Research Archive (Aberdeen University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I195460627","host_organization_name":"University of Aberdeen","host_organization_lineage":["https://openalex.org/I195460627"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal article"},{"id":"pmh:oai:doaj.org/article:e5738881f73c416c849805ad06923bec","is_oa":true,"landing_page_url":"https://doaj.org/article/e5738881f73c416c849805ad06923bec","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-13 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05441-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05441-7","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-023-05441-7.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/8","display_name":"Decent work and economic growth","score":0.6000000238418579}],"awards":[{"id":"https://openalex.org/G3712139607","display_name":null,"funder_award_id":"81770534","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4386620529.pdf","grobid_xml":"https://content.openalex.org/works/W4386620529.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1569446430","https://openalex.org/W1593960337","https://openalex.org/W2013937380","https://openalex.org/W2024248021","https://openalex.org/W2147806662","https://openalex.org/W2537679995","https://openalex.org/W2606616797","https://openalex.org/W2766204235","https://openalex.org/W2872471934","https://openalex.org/W2889334297","https://openalex.org/W2909481667","https://openalex.org/W2938475243","https://openalex.org/W2980767508","https://openalex.org/W3012618199","https://openalex.org/W3023885793","https://openalex.org/W3025937945","https://openalex.org/W3026308742","https://openalex.org/W3037568075","https://openalex.org/W3092486253","https://openalex.org/W3164648499","https://openalex.org/W3164750226","https://openalex.org/W3174281602","https://openalex.org/W3190084302","https://openalex.org/W3217673092","https://openalex.org/W4210990885","https://openalex.org/W4220843792","https://openalex.org/W4224288770","https://openalex.org/W4229440654","https://openalex.org/W4280571537","https://openalex.org/W4281962390","https://openalex.org/W4283774733","https://openalex.org/W4284665181","https://openalex.org/W4307410690","https://openalex.org/W4311119072","https://openalex.org/W4327644571","https://openalex.org/W4360770766","https://openalex.org/W4367663121","https://openalex.org/W6600266142","https://openalex.org/W6653459471"],"related_works":["https://openalex.org/W2906670751","https://openalex.org/W3030236128","https://openalex.org/W3046695129","https://openalex.org/W3028919671","https://openalex.org/W4323652392","https://openalex.org/W3168973927","https://openalex.org/W3030028889","https://openalex.org/W3038088324","https://openalex.org/W4328111552","https://openalex.org/W2990594716"],"abstract_inverted_index":{"Circular":[0],"RNA":[1],"(CircRNA)":[2],"is":[3],"a":[4,43,63],"type":[5],"of":[6,26,67,106,126],"non-coding":[7],"RNAs":[8],"in":[9,136],"which":[10],"both":[11],"ends":[12],"are":[13,36,77,82,100,115],"covalently":[14],"linked.":[15],"Researchers":[16],"have":[17],"demonstrated":[18],"that":[19,130,146],"many":[20],"circRNAs":[21],"can":[22],"act":[23],"as":[24,60],"biomarkers":[25],"diseases.":[27],"However,":[28],"traditional":[29],"experimental":[30],"methods":[31],"for":[32,55],"circRNA-disease":[33,56,68,154],"associations":[34,57,73,76],"identification":[35],"labor-intensive.":[37],"In":[38,122,140],"this":[39],"work,":[40],"we":[41],"propose":[42],"novel":[44,119,153],"method":[45],"based":[46],"on":[47],"the":[48,88,92,104,112,124,149],"heterogeneous":[49,64],"graph":[50,65],"neural":[51],"network":[52],"and":[53,74,84,97,108],"metapaths":[54,81],"prediction":[58],"termed":[59],"HMCDA.":[61],"First,":[62],"consisting":[66],"associations,":[69,71],"circRNA-miRNA":[70],"miRNA-disease":[72],"disease-disease":[75],"constructed.":[78],"Then,":[79],"six":[80],"defined":[83],"generated":[85],"according":[86],"to":[87,102,117,151],"biomedical":[89],"pathways.":[90],"Afterwards,":[91],"entity":[93],"content":[94],"transformation,":[95],"intra-metapath":[96],"inter-metapath":[98],"aggregation":[99],"implemented":[101],"learn":[103],"embeddings":[105,114],"circRNA":[107],"disease":[109],"entities.":[110],"Finally,":[111],"learned":[113],"used":[116],"predict":[118],"circRNA-disase":[120],"associations.":[121,155],"particular,":[123],"result":[125],"extensive":[127],"experiments":[128],"demonstrates":[129],"HMCDA":[131,147],"outperforms":[132],"four":[133],"state-of-the-art":[134],"models":[135],"fivefold":[137],"cross":[138],"validation.":[139],"addition,":[141],"our":[142],"case":[143],"study":[144],"indicates":[145],"has":[148],"ability":[150],"identify":[152]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":6}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
