{"id":"https://openalex.org/W4385876842","doi":"https://doi.org/10.1186/s12859-023-05433-7","title":"ARCA: the interactive database for arbovirus reported cases in the Americas","display_name":"ARCA: the interactive database for arbovirus reported cases in the Americas","publication_year":2023,"publication_date":"2023-08-16","ids":{"openalex":"https://openalex.org/W4385876842","doi":"https://doi.org/10.1186/s12859-023-05433-7","pmid":"https://pubmed.ncbi.nlm.nih.gov/37587443"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05433-7","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-023-05433-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05433-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05433-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092649464","display_name":"Maria V. Meneses","orcid":null},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maria V. Meneses","raw_affiliation_strings":["Emerging Pathogens Institute, University of Florida, Gainesville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Emerging Pathogens Institute, University of Florida, Gainesville, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012026856","display_name":"Alberto Riva","orcid":"https://orcid.org/0000-0001-9150-8333"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alberto Riva","raw_affiliation_strings":["Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030387965","display_name":"Marco Salemi","orcid":"https://orcid.org/0000-0003-0136-2102"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]},{"id":"https://openalex.org/I94062374","display_name":"Florida College","ror":"https://ror.org/010bgev76","country_code":"US","type":"education","lineage":["https://openalex.org/I94062374"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Marco Salemi","raw_affiliation_strings":["Department of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, USA. salemi@pathology.ufl.edu","Emerging Pathogens Institute, University of Florida, Gainesville, USA. salemi@pathology.ufl.edu","Emerging Pathogens Institute, University of Florida, Gainesville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, USA. salemi@pathology.ufl.edu","institution_ids":["https://openalex.org/I94062374","https://openalex.org/I33213144"]},{"raw_affiliation_string":"Emerging Pathogens Institute, University of Florida, Gainesville, USA. salemi@pathology.ufl.edu","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Emerging Pathogens Institute, University of Florida, Gainesville, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008138111","display_name":"Carla Mavian","orcid":"https://orcid.org/0000-0003-3819-5520"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]},{"id":"https://openalex.org/I94062374","display_name":"Florida College","ror":"https://ror.org/010bgev76","country_code":"US","type":"education","lineage":["https://openalex.org/I94062374"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Carla Mavian","raw_affiliation_strings":["Department of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, USA. cmavian@ufl.edu","Emerging Pathogens Institute, University of Florida, Gainesville, USA. cmavian@ufl.edu","Emerging Pathogens Institute, University of Florida, Gainesville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, USA. cmavian@ufl.edu","institution_ids":["https://openalex.org/I94062374"]},{"raw_affiliation_string":"Emerging Pathogens Institute, University of Florida, Gainesville, USA. cmavian@ufl.edu","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Emerging Pathogens Institute, University of Florida, Gainesville, USA","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5008138111","https://openalex.org/A5030387965"],"corresponding_institution_ids":["https://openalex.org/I33213144","https://openalex.org/I94062374"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.2719,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.61220412,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"24","issue":"1","first_page":"312","last_page":"312"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10166","display_name":"Mosquito-borne diseases and control","score":0.9490000009536743,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10166","display_name":"Mosquito-borne diseases and control","score":0.9490000009536743,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.007699999958276749,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.0071000000461936,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/arbovirus","display_name":"Arbovirus","score":0.8289109468460083},{"id":"https://openalex.org/keywords/chikungunya","display_name":"Chikungunya","score":0.6256614923477173},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.5570411682128906},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5258743762969971},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49834561347961426},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.381106436252594},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2676284909248352},{"id":"https://openalex.org/keywords/dengue-fever","display_name":"Dengue fever","score":0.26388922333717346},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16837754845619202}],"concepts":[{"id":"https://openalex.org/C2778116200","wikidata":"https://www.wikidata.org/wiki/Q630622","display_name":"Arbovirus","level":3,"score":0.8289109468460083},{"id":"https://openalex.org/C2781273456","wikidata":"https://www.wikidata.org/wiki/Q243257","display_name":"Chikungunya","level":3,"score":0.6256614923477173},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.5570411682128906},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5258743762969971},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49834561347961426},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.381106436252594},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2676284909248352},{"id":"https://openalex.org/C533803919","wikidata":"https://www.wikidata.org/wiki/Q30953","display_name":"Dengue fever","level":2,"score":0.26388922333717346},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16837754845619202},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.0},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.0},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000071243","descriptor_name":"Zika Virus Infection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071243","descriptor_name":"Zika Virus Infection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071243","descriptor_name":"Zika Virus Infection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071244","descriptor_name":"Zika Virus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071244","descriptor_name":"Zika Virus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071244","descriptor_name":"Zika Virus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000569","descriptor_name":"Americas","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000569","descriptor_name":"Americas","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000569","descriptor_name":"Americas","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001103","descriptor_name":"Arboviruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001103","descriptor_name":"Arboviruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001103","descriptor_name":"Arboviruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058872","descriptor_name":"Epidemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058872","descriptor_name":"Epidemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058872","descriptor_name":"Epidemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-023-05433-7","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-023-05433-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05433-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37587443","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37587443","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10428600","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10428600","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10428600/pdf/12859_2023_Article_5433.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:aa10f907a524439d9dda70c4f97a1114","is_oa":true,"landing_page_url":"https://doaj.org/article/aa10f907a524439d9dda70c4f97a1114","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-7 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05433-7","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-023-05433-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05433-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8399999737739563,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4385876842.pdf","grobid_xml":"https://content.openalex.org/works/W4385876842.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1973681765","https://openalex.org/W1974165922","https://openalex.org/W2030818049","https://openalex.org/W2735255585","https://openalex.org/W2978524185","https://openalex.org/W2981812318","https://openalex.org/W3084439431","https://openalex.org/W3135016420","https://openalex.org/W4376524801","https://openalex.org/W6776878840"],"related_works":["https://openalex.org/W2398217763","https://openalex.org/W2805765839","https://openalex.org/W2796128796","https://openalex.org/W3119127964","https://openalex.org/W2035371613","https://openalex.org/W4303426757","https://openalex.org/W4376637599","https://openalex.org/W2328895877","https://openalex.org/W4211049805","https://openalex.org/W2977405411"],"abstract_inverted_index":{"BACKGROUND:":[0],"Accurate":[1],"case":[2,63,118],"report":[3],"data":[4,35,64,119,155],"are":[5,36,41],"essential":[6],"to":[7,103,115],"understand":[8],"arbovirus":[9,29],"dynamics,":[10],"including":[11],"spread":[12],"and":[13,21,58,100,158],"evolution":[14],"of":[15,28,127],"arboviruses":[16],"such":[17],"as":[18],"Zika,":[19],"dengue":[20],"chikungunya":[22],"viruses.":[23],"Giving":[24],"the":[25,32,66,78,85,88,94,125],"multi-country":[26],"nature":[27],"epidemics":[30],"in":[31,65,107],"Americas,":[33],"these":[34,105],"not":[37],"often":[38],"accessible":[39],"or":[40,135],"reported":[42],"at":[43],"different":[44,50],"time":[45],"scales":[46],"(weekly,":[47],"monthly)":[48],"from":[49],"sources.":[51],"RESULTS:":[52],"We":[53],"developed":[54],"a":[55,71,121,130,133,137,144],"publicly":[56],"available":[57],"user-friendly":[59],"database":[60,73,86,142],"for":[61,129,147,152],"arboviral":[62,117,148],"Americas:":[67],"ARCA.":[68],"ARCA":[69,79,141],"is":[70,75,143],"relational":[72],"that":[74],"hosted":[76],"on":[77],"website.":[80],"Users":[81,112],"can":[82,113],"interact":[83],"with":[84],"through":[87,93,120,136],"website":[89],"by":[90],"submitting":[91],"queries":[92],"website,":[95],"which":[96,123],"generates":[97],"displays":[98],"results":[99,106],"allows":[101],"users":[102],"download":[104],"different,":[108],"convenient":[109],"file":[110],"formats.":[111],"choose":[114],"view":[116],"table":[122],"containscontaining":[124],"number":[126],"cases":[128],"particular":[131],"week,":[132],"plot,":[134],"map.":[138],"CONCLUSION:":[139],"Our":[140],"useful":[145],"tool":[146],"epidemiology":[149],"research":[150],"allowing":[151],"complex":[153],"queries,":[154],"visualization,":[156],"integration,":[157],"formatting.":[159]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
