{"id":"https://openalex.org/W4385380590","doi":"https://doi.org/10.1186/s12859-023-05420-y","title":"ROGUE: an R Shiny app for RNA sequencing analysis and biomarker discovery","display_name":"ROGUE: an R Shiny app for RNA sequencing analysis and biomarker discovery","publication_year":2023,"publication_date":"2023-07-29","ids":{"openalex":"https://openalex.org/W4385380590","doi":"https://doi.org/10.1186/s12859-023-05420-y","pmid":"https://pubmed.ncbi.nlm.nih.gov/37516886"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05420-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05420-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05420-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05420-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059749354","display_name":"Alvin Farrel","orcid":"https://orcid.org/0000-0003-1087-9840"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]},{"id":"https://openalex.org/I4210106489","display_name":"National Heart Lung and Blood Institute","ror":"https://ror.org/012pb6c26","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210106489"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alvin Farrel","raw_affiliation_strings":["Department of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, USA. farrela@chop.edu","Division of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA. farrela@chop.edu","Immunology Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA. farrela@chop.edu","Laboratory of Molecular Immunology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA. farrela@chop.edu","Laboratory of Molecular Immunology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, USA. farrela@chop.edu","institution_ids":["https://openalex.org/I1335321130"]},{"raw_affiliation_string":"Division of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA. farrela@chop.edu","institution_ids":["https://openalex.org/I1335321130"]},{"raw_affiliation_string":"Immunology Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA. farrela@chop.edu","institution_ids":["https://openalex.org/I4210106489"]},{"raw_affiliation_string":"Laboratory of Molecular Immunology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA. farrela@chop.edu","institution_ids":["https://openalex.org/I4210106489"]},{"raw_affiliation_string":"Laboratory of Molecular Immunology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210106489","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100432706","display_name":"Peng Li","orcid":"https://orcid.org/0000-0002-4721-5936"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210106489","display_name":"National Heart Lung and Blood Institute","ror":"https://ror.org/012pb6c26","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210106489"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peng Li","raw_affiliation_strings":["Immunology Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA","Laboratory of Molecular Immunology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA"],"affiliations":[{"raw_affiliation_string":"Immunology Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210106489","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"Laboratory of Molecular Immunology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210106489","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054720495","display_name":"Sharon Veenbergen","orcid":"https://orcid.org/0009-0009-9114-2998"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]},{"id":"https://openalex.org/I4210106489","display_name":"National Heart Lung and Blood Institute","ror":"https://ror.org/012pb6c26","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210106489"]}],"countries":["NL","US"],"is_corresponding":false,"raw_author_name":"Sharon Veenbergen","raw_affiliation_strings":["Laboratory of Medical Immunology, Department of Immunology, Erasmus University Medical Center, Rotterdam, The Netherlands","Laboratory of Molecular Immunology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA","Laboratory of Pediatric Gastroenterology, Erasmus University Medical Center, Rotterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Laboratory of Medical Immunology, Department of Immunology, Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]},{"raw_affiliation_string":"Laboratory of Molecular Immunology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210106489","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"Laboratory of Pediatric Gastroenterology, Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101420363","display_name":"Khushbu Patel","orcid":"https://orcid.org/0000-0002-3269-7442"},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Khushbu Patel","raw_affiliation_strings":["Department of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, USA","Division of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I1335321130"]},{"raw_affiliation_string":"Division of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I1335321130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005797590","display_name":"John M. Maris","orcid":"https://orcid.org/0000-0002-8088-7929"},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John M. Maris","raw_affiliation_strings":["Division of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA","Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA"],"affiliations":[{"raw_affiliation_string":"Division of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I1335321130"]},{"raw_affiliation_string":"Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012950291","display_name":"Warren J. Leonard","orcid":"https://orcid.org/0000-0002-5740-7448"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210106489","display_name":"National Heart Lung and Blood Institute","ror":"https://ror.org/012pb6c26","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210106489"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Warren J. Leonard","raw_affiliation_strings":["Immunology Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA. wjl@helix.nih.gov","Laboratory of Molecular Immunology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA. wjl@helix.nih.gov","Immunology Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA"],"affiliations":[{"raw_affiliation_string":"Immunology Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA. wjl@helix.nih.gov","institution_ids":["https://openalex.org/I4210106489"]},{"raw_affiliation_string":"Laboratory of Molecular Immunology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA. wjl@helix.nih.gov","institution_ids":["https://openalex.org/I4210106489"]},{"raw_affiliation_string":"Immunology Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210106489","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5059749354"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I1335321130","https://openalex.org/I4210106489"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.9136,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.75243125,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"24","issue":"1","first_page":"303","last_page":"303"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5264117121696472},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4882107079029083},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4437769651412964},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43164852261543274},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.42938125133514404},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.39136072993278503},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3581017851829529},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.27534663677215576},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15229356288909912}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5264117121696472},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4882107079029083},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4437769651412964},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43164852261543274},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.42938125133514404},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39136072993278503},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3581017851829529},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.27534663677215576},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15229356288909912},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063731","descriptor_name":"Mobile Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063731","descriptor_name":"Mobile Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063731","descriptor_name":"Mobile Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063731","descriptor_name":"Mobile Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-023-05420-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05420-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05420-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37516886","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37516886","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.eur.nl:openaire/aee88085-2e24-4dbe-a80a-3b11c84fe460","is_oa":true,"landing_page_url":"https://pure.eur.nl/en/publications/aee88085-2e24-4dbe-a80a-3b11c84fe460","pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Farrel, A, Li, P, Veenbergen, S, Patel, K, Maris, J M & Leonard, W J 2023, 'ROGUE : an R Shiny app for RNA sequencing analysis and biomarker discovery', BMC Bioinformatics, vol. 24, no. 1, 303. https://doi.org/10.1186/s12859-023-05420-y","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:10386769","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10386769","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10386769/pdf/12859_2023_Article_5420.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:e91865a53dda4217a15713b89c887b5d","is_oa":true,"landing_page_url":"https://doaj.org/article/e91865a53dda4217a15713b89c887b5d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-13 (2023)","raw_type":"article"},{"id":"pmh:oai:pure.eur.nl:publications/aee88085-2e24-4dbe-a80a-3b11c84fe460","is_oa":true,"landing_page_url":"https://pure.eur.nl/files/97967806/an_R_Shiny_app_for_RNA_sequencing_analysis_and_biomarker_discovery.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Farrel , A , Li , P , Veenbergen , S , Patel , K , Maris , J M &amp; Leonard , W J 2023 , ' ROGUE : an R Shiny app for RNA sequencing analysis and biomarker discovery ' , BMC Bioinformatics , vol. 24 , no. 1 , 303 . https://doi.org/10.1186/s12859-023-05420-y","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05420-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05420-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05420-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5378943921","display_name":null,"funder_award_id":"R35 CA22050","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5620858723","display_name":null,"funder_award_id":"U54 CA232568","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5796731615","display_name":null,"funder_award_id":"P01 CA217959","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6215589929","display_name":null,"funder_award_id":"R35 CA220500","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320338421","display_name":"NHLBI Division of Intramural Research","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4385380590.pdf"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W1972467243","https://openalex.org/W1973646620","https://openalex.org/W1997527024","https://openalex.org/W1999574084","https://openalex.org/W2000303003","https://openalex.org/W2010457001","https://openalex.org/W2014925179","https://openalex.org/W2015848791","https://openalex.org/W2016578576","https://openalex.org/W2020541351","https://openalex.org/W2043256631","https://openalex.org/W2045136965","https://openalex.org/W2046013214","https://openalex.org/W2067485462","https://openalex.org/W2068409497","https://openalex.org/W2069310363","https://openalex.org/W2070076482","https://openalex.org/W2070098033","https://openalex.org/W2076651424","https://openalex.org/W2081893364","https://openalex.org/W2083874631","https://openalex.org/W2100305481","https://openalex.org/W2103017472","https://openalex.org/W2103898789","https://openalex.org/W2114104545","https://openalex.org/W2123579165","https://openalex.org/W2124720965","https://openalex.org/W2125494260","https://openalex.org/W2130410032","https://openalex.org/W2134526812","https://openalex.org/W2137526110","https://openalex.org/W2141458291","https://openalex.org/W2141545183","https://openalex.org/W2147692258","https://openalex.org/W2158485828","https://openalex.org/W2164227047","https://openalex.org/W2179438025","https://openalex.org/W2236822143","https://openalex.org/W2321872593","https://openalex.org/W2323326409","https://openalex.org/W2342127666","https://openalex.org/W2408517720","https://openalex.org/W2463277633","https://openalex.org/W2510875395","https://openalex.org/W2571745526","https://openalex.org/W2731748842","https://openalex.org/W2755476157","https://openalex.org/W2766265235","https://openalex.org/W2766566645","https://openalex.org/W2780155440","https://openalex.org/W2810124351","https://openalex.org/W2898321887","https://openalex.org/W2900044275","https://openalex.org/W2902652978","https://openalex.org/W2902719032","https://openalex.org/W2938875479","https://openalex.org/W2949084500","https://openalex.org/W2949707636","https://openalex.org/W2950063384","https://openalex.org/W2953020124","https://openalex.org/W2964277518","https://openalex.org/W3023058184","https://openalex.org/W3112600195","https://openalex.org/W4298082496","https://openalex.org/W4399578546","https://openalex.org/W4399636900"],"related_works":["https://openalex.org/W2362192218","https://openalex.org/W2381477132","https://openalex.org/W1867395701","https://openalex.org/W2377000990","https://openalex.org/W2386636980","https://openalex.org/W2120460904","https://openalex.org/W1602573413","https://openalex.org/W2369157347","https://openalex.org/W2373434917","https://openalex.org/W2773694660"],"abstract_inverted_index":{"User-friendly":[0],"tools":[1],"for":[2],"the":[3],"analysis":[4],"of":[5],"next":[6],"generation":[7],"sequencing":[8],"data,":[9],"such":[10],"as":[11],"ROGUE,":[12],"will":[13],"allow":[14],"biologists":[15],"to":[16,31],"efficiently":[17],"explore":[18],"their":[19,26],"datasets,":[20],"discover":[21],"expression":[22],"patterns,":[23],"and":[24,33],"advance":[25],"research":[27],"by":[28],"allowing":[29],"them":[30],"develop":[32],"test":[34],"hypotheses.":[35]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
