{"id":"https://openalex.org/W4367600858","doi":"https://doi.org/10.1186/s12859-023-05291-3","title":"Faster and more accurate pathogenic combination predictions with VarCoPP2.0","display_name":"Faster and more accurate pathogenic combination predictions with VarCoPP2.0","publication_year":2023,"publication_date":"2023-05-01","ids":{"openalex":"https://openalex.org/W4367600858","doi":"https://doi.org/10.1186/s12859-023-05291-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/37127601"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05291-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05291-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05291-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05291-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014199966","display_name":"Nassim Versbraegen","orcid":"https://orcid.org/0000-0002-1881-4809"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Nassim Versbraegen","raw_affiliation_strings":["Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium. nversbra@ulb.ac.be","Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium. nversbra@ulb.ac.be","Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium. nversbra@ulb.ac.be","institution_ids":["https://openalex.org/I132053463","https://openalex.org/I13469542"]},{"raw_affiliation_string":"Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium. nversbra@ulb.ac.be","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075438898","display_name":"Barbara Gravel","orcid":"https://orcid.org/0000-0002-5422-2376"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Barbara Gravel","raw_affiliation_strings":["Artificial Intelligence Laboratory, Vrije Universiteit Brussel, 1050, Brussels, Belgium","Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium","Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Laboratory, Vrije Universiteit Brussel, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]},{"raw_affiliation_string":"Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463","https://openalex.org/I13469542"]},{"raw_affiliation_string":"Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047935814","display_name":"Charlotte Nachtegael","orcid":"https://orcid.org/0000-0002-5034-8975"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Charlotte Nachtegael","raw_affiliation_strings":["Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium","Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463","https://openalex.org/I13469542"]},{"raw_affiliation_string":"Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081793262","display_name":"Alexandre Renaux","orcid":"https://orcid.org/0000-0002-4339-2791"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Alexandre Renaux","raw_affiliation_strings":["Artificial Intelligence Laboratory, Vrije Universiteit Brussel, 1050, Brussels, Belgium","Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium","Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Laboratory, Vrije Universiteit Brussel, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]},{"raw_affiliation_string":"Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463","https://openalex.org/I13469542"]},{"raw_affiliation_string":"Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088087491","display_name":"Emma Verkinderen","orcid":null},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Emma Verkinderen","raw_affiliation_strings":["Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium","Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463","https://openalex.org/I13469542"]},{"raw_affiliation_string":"Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064553018","display_name":"Ann Now\u00e9","orcid":"https://orcid.org/0000-0001-6346-4564"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Ann Now\u00e9","raw_affiliation_strings":["Artificial Intelligence Laboratory, Vrije Universiteit Brussel, 1050, Brussels, Belgium","Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Laboratory, Vrije Universiteit Brussel, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]},{"raw_affiliation_string":"Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463","https://openalex.org/I13469542"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003581663","display_name":"Tom Lenaerts","orcid":"https://orcid.org/0000-0003-3645-1455"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Tom Lenaerts","raw_affiliation_strings":["Artificial Intelligence Laboratory, Vrije Universiteit Brussel, 1050, Brussels, Belgium","Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium","Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Laboratory, Vrije Universiteit Brussel, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]},{"raw_affiliation_string":"Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463","https://openalex.org/I13469542"]},{"raw_affiliation_string":"Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021386047","display_name":"Sofia Papadimitriou","orcid":"https://orcid.org/0000-0002-5057-4331"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Sofia Papadimitriou","raw_affiliation_strings":["Artificial Intelligence Laboratory, Vrije Universiteit Brussel, 1050, Brussels, Belgium","Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium","Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Laboratory, Vrije Universiteit Brussel, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]},{"raw_affiliation_string":"Interuniversity Institute of Bioinformatics in Brussels, Universit\u00e9 Libre de Bruxelles-Vrije Universiteit Brussel, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463","https://openalex.org/I13469542"]},{"raw_affiliation_string":"Machine Learning Group, Universit\u00e9 Libre de Bruxelles, 1050, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5014199966"],"corresponding_institution_ids":["https://openalex.org/I132053463","https://openalex.org/I13469542"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.9171,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.95375394,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"24","issue":"1","first_page":"179","last_page":"179"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.5734000205993652,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.5734000205993652,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.2953999936580658,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.015300000086426735,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5883598327636719},{"id":"https://openalex.org/keywords/pathogenicity","display_name":"Pathogenicity","score":0.5855379104614258},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5161677002906799},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4769952893257141},{"id":"https://openalex.org/keywords/cross-validation","display_name":"Cross-validation","score":0.45871642231941223},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4498995840549469},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4092978239059448},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4021884799003601},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36090797185897827},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2526036500930786}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5883598327636719},{"id":"https://openalex.org/C64502627","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogenicity","level":2,"score":0.5855379104614258},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5161677002906799},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4769952893257141},{"id":"https://openalex.org/C27181475","wikidata":"https://www.wikidata.org/wiki/Q541014","display_name":"Cross-validation","level":2,"score":0.45871642231941223},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4498995840549469},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4092978239059448},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4021884799003601},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36090797185897827},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2526036500930786},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.0}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.1186/s12859-023-05291-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05291-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05291-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37127601","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37127601","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:dipot.ulb.ac.be:2013/363455","is_oa":true,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/363455","pdf_url":"https://dipot.ulb.ac.be/dspace/bitstream/2013/363455/1/doi_347099.pdf","source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC bioinformatics, 24 (1","raw_type":"info:ulb-repo/semantics/openurl/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10152795","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10152795","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10152795/pdf/12859_2023_Article_5291.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:vubissmart:VUBISSMART:2000:167385","is_oa":true,"landing_page_url":"https://biblio.vub.ac.be/vubir/faster-and-more-accurate-pathogenic-combination-predictions-with-varcopp20(ac5eec52-d38f-4121-899b-c0fa26fc8e78).html","pdf_url":"https://biblio.vub.ac.be/vubirfiles/105564776/96473604.pdf","source":{"id":"https://openalex.org/S4306402573","display_name":"VUBIR (Vrije Universiteit Brussel)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I13469542","host_organization_name":"Vrije Universiteit Brussel","host_organization_lineage":["https://openalex.org/I13469542"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"publishedVersion"},{"id":"pmh:oai:dipot.ulb.ac.be:2013/366750","is_oa":true,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/366750","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"In: Benelux AI Conference (BNAIC) / Benelux Machine Learning Conference (Benelearn)","raw_type":"info:ulb-repo/semantics/openurl/document"},{"id":"pmh:oai:doaj.org/article:7976771cac774d558b85ecec69028ce7","is_oa":true,"landing_page_url":"https://doaj.org/article/7976771cac774d558b85ecec69028ce7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-19 (2023)","raw_type":"article"},{"id":"pmh:oai:vubissmart:VUBISSMART:2000:185059","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402573","display_name":"VUBIR (Vrije Universiteit Brussel)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I13469542","host_organization_name":"Vrije Universiteit Brussel","host_organization_lineage":["https://openalex.org/I13469542"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05291-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05291-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05291-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.6600000262260437,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1219412175","display_name":null,"funder_award_id":"35276964","funder_id":"https://openalex.org/F4320321390","funder_display_name":"Fonds De La Recherche Scientifique - FNRS"},{"id":"https://openalex.org/G223064752","display_name":null,"funder_award_id":"27.002.53.01.4524","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G3978218428","display_name":null,"funder_award_id":"40005602","funder_id":"https://openalex.org/F4320321390","funder_display_name":"Fonds De La Recherche Scientifique - FNRS"},{"id":"https://openalex.org/G6817462469","display_name":null,"funder_award_id":"40008622","funder_id":"https://openalex.org/F4320321390","funder_display_name":"Fonds De La Recherche Scientifique - FNRS"},{"id":"https://openalex.org/G8193570376","display_name":null,"funder_award_id":"2010235-ARIAC","funder_id":"https://openalex.org/F4320325905","funder_display_name":"Service Public de Wallonie"},{"id":"https://openalex.org/G8432427218","display_name":null,"funder_award_id":"2020 RDIR 55b","funder_id":"https://openalex.org/F4320322852","funder_display_name":"Innoviris"},{"id":"https://openalex.org/G8594859193","display_name":null,"funder_award_id":"I002819N","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"}],"funders":[{"id":"https://openalex.org/F4320321390","display_name":"Fonds De La Recherche Scientifique - FNRS","ror":"https://ror.org/03q83t159"},{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320322852","display_name":"Innoviris","ror":"https://ror.org/04af9zr29"},{"id":"https://openalex.org/F4320325905","display_name":"Service Public de Wallonie","ror":"https://ror.org/0215gxf82"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4367600858.pdf"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1868492295","https://openalex.org/W1964426200","https://openalex.org/W1980948656","https://openalex.org/W2032315443","https://openalex.org/W2062699991","https://openalex.org/W2091007025","https://openalex.org/W2092123736","https://openalex.org/W2103017472","https://openalex.org/W2104549677","https://openalex.org/W2144368480","https://openalex.org/W2148043260","https://openalex.org/W2152565567","https://openalex.org/W2169528473","https://openalex.org/W2472617162","https://openalex.org/W2485576080","https://openalex.org/W2521200999","https://openalex.org/W2583057702","https://openalex.org/W2732446246","https://openalex.org/W2765910974","https://openalex.org/W2798667089","https://openalex.org/W2901239961","https://openalex.org/W2905452503","https://openalex.org/W2947236961","https://openalex.org/W2949598989","https://openalex.org/W2964351992","https://openalex.org/W3006877085","https://openalex.org/W3094967361","https://openalex.org/W3107527779","https://openalex.org/W3112386855","https://openalex.org/W3112600195","https://openalex.org/W3165955515","https://openalex.org/W3186118520","https://openalex.org/W3196806911","https://openalex.org/W3200057886","https://openalex.org/W3202422497","https://openalex.org/W3211402536","https://openalex.org/W4220768028","https://openalex.org/W4243979784","https://openalex.org/W4280495795","https://openalex.org/W4284896905","https://openalex.org/W4300009529","https://openalex.org/W4311747980","https://openalex.org/W4313325617","https://openalex.org/W7053126446"],"related_works":["https://openalex.org/W2396298374","https://openalex.org/W2391280391","https://openalex.org/W3149945258","https://openalex.org/W3009861024","https://openalex.org/W2375239288","https://openalex.org/W1974335296","https://openalex.org/W816105089","https://openalex.org/W2042355547","https://openalex.org/W2035108648","https://openalex.org/W4214518542"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,55,228],"prediction":[2],"of":[3,17,25,38,51,110,124,157,188,201,211,230,241,255,270,292],"potentially":[4,69,137],"pathogenic":[5,70,138],"variant":[6,71,77,140,202,257],"combinations":[7,72,203],"in":[8,14,45,65,73,84,155,161,219],"patients":[9],"remains":[10],"a":[11,98,128,180,189,237,288],"key":[12],"task":[13],"the":[15,21,36,48,52,80,108,122,173,186,215,221,253,268,303],"field":[16],"medical":[18],"genetics":[19],"for":[20,265],"understanding":[22],"and":[23,41,67,90,114,131,145,163,167,258,282],"detection":[24],"oligogenic/multilocus":[26],"diseases.":[27,299],"Models":[28],"tailored":[29],"towards":[30],"such":[31,101],"cases":[32],"can":[33,42,301],"help":[34],"shorten":[35],"gap":[37],"missing":[39],"diagnoses":[40],"aid":[43],"researchers":[44],"dealing":[46],"with":[47,209],"high":[49],"complexity":[50],"derived":[53],"data.":[54,314],"predictor":[56],"VarCoPP":[57,125],"(Variant":[58],"Combinations":[59],"Pathogenicity":[60],"Predictor)":[61],"that":[62,96,126,151,204,252],"was":[63,79],"published":[64],"2019":[66],"identified":[68,244],"gene":[74,259],"pairs":[75],"(bilocus":[76],"combinations),":[78],"first":[81],"important":[82,264],"step":[83],"this":[85],"direction.":[86],"Despite":[87],"its":[88,103,111,115,176,231,279],"usefulness":[89,269],"applicability,":[91],"several":[92],"issues":[93],"still":[94],"remained":[95],"hindered":[97],"better":[99],"performance,":[100],"as":[102],"False":[104],"Positive":[105],"(FP)":[106],"rate,":[107],"quality":[109],"training":[112,197],"set":[113,198],"complex":[116],"architecture.":[117],"RESULTS:":[118],"We":[119,250],"present":[120,218],"VarCoPP2.0:":[121],"successor":[123],"is":[127,233,263],"simplified,":[129],"faster":[130,283],"more":[132,206,238,289],"accurate":[133,290],"predictive":[134],"model":[135],"identifying":[136],"bilocus":[139],"combinations.":[141],"Results":[142],"from":[143],"cross-validation":[144,162],"on":[146,214,312],"independent":[147],"data":[148,294],"sets":[149,295],"reveal":[150],"VarCoPP2.0":[152,286,311],"has":[153],"improved":[154,280],"terms":[156],"both":[158],"sensitivity":[159],"(95%":[160],"98%":[164],"during":[165],"testing)":[166],"specificity":[168],"(5%":[169],"FP":[170],"rate).":[171],"At":[172],"same":[174],"time,":[175,285],"running":[177],"time":[178],"shows":[179],"significant":[181],"150-fold":[182],"decrease":[183],"due":[184],"to":[185,236,297,309],"selection":[187,240],"simpler":[190],"Balanced":[191],"Random":[192],"Forest":[193],"model.":[194],"Its":[195],"positive":[196],"now":[199],"consists":[200],"are":[205],"confidently":[207],"linked":[208,296],"evidence":[210],"pathogenicity,":[212],"based":[213],"confidence":[216],"scores":[217],"OLIDA,":[220],"Oligogenic":[222],"Diseases":[223],"Database":[224],"(":[225,306],"https://olida.ibsquare.be":[226],").":[227],"improvement":[229],"performance":[232,281],"also":[234],"attributed":[235],"careful":[239],"up-to-date":[242],"features":[243,261],"via":[245],"an":[246],"original":[247],"wrapper":[248],"method.":[249],"show":[251],"combination":[254],"different":[256,275],"pair":[260],"together":[262],"predictions,":[266],"highlighting":[267],"integrating":[271],"biological":[272],"information":[273],"at":[274],"levels.":[276],"CONCLUSIONS:":[277],"Through":[278],"execution":[284],"enables":[287],"analysis":[291],"larger":[293],"oligogenic":[298],"Users":[300],"access":[302],"ORVAL":[304],"platform":[305],"https://orval.ibsquare.be":[307],")":[308],"apply":[310],"their":[313]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":5}],"updated_date":"2026-06-03T09:05:47.796612","created_date":"2025-10-10T00:00:00"}
