{"id":"https://openalex.org/W4366283446","doi":"https://doi.org/10.1186/s12859-023-05280-6","title":"PyAGH: a python package to fast construct kinship matrices based on different levels of omic data","display_name":"PyAGH: a python package to fast construct kinship matrices based on different levels of omic data","publication_year":2023,"publication_date":"2023-04-18","ids":{"openalex":"https://openalex.org/W4366283446","doi":"https://doi.org/10.1186/s12859-023-05280-6","pmid":"https://pubmed.ncbi.nlm.nih.gov/37072709"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05280-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05280-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05280-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"software-paper","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05280-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101939249","display_name":"Wei Zhao","orcid":"https://orcid.org/0000-0002-7130-7670"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Zhao","raw_affiliation_strings":["Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, 800# Dongchuan Road, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, 800# Dongchuan Road, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085174270","display_name":"Qamar Raza Qadri","orcid":"https://orcid.org/0000-0002-3995-267X"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qamar Raza Qadri","raw_affiliation_strings":["Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, 800# Dongchuan Road, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, 800# Dongchuan Road, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101596698","display_name":"Zhenyang Zhang","orcid":"https://orcid.org/0009-0000-2821-7736"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenyang Zhang","raw_affiliation_strings":["Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China","Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China. zhe_zhang@zju.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China. zhe_zhang@zju.edu.cn","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100422279","display_name":"Zhen Wang","orcid":"https://orcid.org/0000-0001-8611-6351"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhenyang Zhang","raw_affiliation_strings":["Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China","Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China. zhe_zhang@zju.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China. zhe_zhang@zju.edu.cn","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073916751","display_name":"Yuchun Pan","orcid":"https://orcid.org/0000-0002-1163-5963"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Wang","raw_affiliation_strings":["Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009588850","display_name":"Qishan Wang","orcid":"https://orcid.org/0000-0002-6475-0009"},"institutions":[{"id":"https://openalex.org/I4210149102","display_name":"Sanya University","ror":"https://ror.org/04fa2qd52","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210149102"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuchun Pan","raw_affiliation_strings":["Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China","Hainan Research Institute, Zhejiang University, 11# Yonyou Industrial Park, Yazhou Bay Science and Technology City, Sanya, 572025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Hainan Research Institute, Zhejiang University, 11# Yonyou Industrial Park, Yazhou Bay Science and Technology City, Sanya, 572025, China","institution_ids":["https://openalex.org/I4210149102"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009588850","display_name":"Qishan Wang","orcid":"https://orcid.org/0000-0002-6475-0009"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qishan Wang","raw_affiliation_strings":["Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China. wangqishan@zju.edu.cn","Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China. wangqishan@zju.edu.cn","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100442938","display_name":"Zhe Zhang","orcid":"https://orcid.org/0000-0001-7338-7718"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhe Zhang","raw_affiliation_strings":["Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China","Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China. zhe_zhang@zju.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China. zhe_zhang@zju.edu.cn","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100442938","display_name":"Zhe Zhang","orcid":"https://orcid.org/0000-0001-7338-7718"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhe Zhang","raw_affiliation_strings":["Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China","Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China. zhe_zhang@zju.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Department of Animal Science, College of Animal Sciences, Zhejiang University, 866# Yuhangtang Road, Hangzhou, 310058, China. zhe_zhang@zju.edu.cn","institution_ids":["https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5009588850","https://openalex.org/A5100422279","https://openalex.org/A5100442938"],"corresponding_institution_ids":["https://openalex.org/I76130692"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":null,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"24","issue":"1","first_page":"153","last_page":"153"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.6880000233650208,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.6880000233650208,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.14630000293254852,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.043699998408555984,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8982217311859131},{"id":"https://openalex.org/keywords/kinship","display_name":"Kinship","score":0.7733141779899597},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6011541485786438},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.579666018486023},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5635986924171448},{"id":"https://openalex.org/keywords/distance-matrices-in-phylogeny","display_name":"Distance matrices in phylogeny","score":0.4886920750141144},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40226805210113525},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.29180654883384705},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28237590193748474},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1463361382484436}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8982217311859131},{"id":"https://openalex.org/C144348335","wikidata":"https://www.wikidata.org/wiki/Q171318","display_name":"Kinship","level":2,"score":0.7733141779899597},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6011541485786438},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.579666018486023},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5635986924171448},{"id":"https://openalex.org/C5349765","wikidata":"https://www.wikidata.org/wiki/Q5282866","display_name":"Distance matrices in phylogeny","level":2,"score":0.4886920750141144},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40226805210113525},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.29180654883384705},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28237590193748474},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1463361382484436},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-023-05280-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05280-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05280-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37072709","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37072709","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10111838","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10111838","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10111838/pdf/12859_2023_Article_5280.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:2c05a11747144032a24cddc29275f8f8","is_oa":true,"landing_page_url":"https://doaj.org/article/2c05a11747144032a24cddc29275f8f8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-12 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05280-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05280-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05280-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5209297636","display_name":null,"funder_award_id":"32102503","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5684581325","display_name":null,"funder_award_id":"2021C02008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4366283446.pdf"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1928998639","https://openalex.org/W1980168725","https://openalex.org/W2002600206","https://openalex.org/W2033151532","https://openalex.org/W2056866467","https://openalex.org/W2067715889","https://openalex.org/W2075470042","https://openalex.org/W2117654632","https://openalex.org/W2142220815","https://openalex.org/W2155496693","https://openalex.org/W2164050502","https://openalex.org/W2326225147","https://openalex.org/W2398079532","https://openalex.org/W2608224819","https://openalex.org/W2749635581","https://openalex.org/W2890556474","https://openalex.org/W2914216819","https://openalex.org/W2918089185","https://openalex.org/W2934861239","https://openalex.org/W2950598813","https://openalex.org/W2979249888","https://openalex.org/W2981528944","https://openalex.org/W3180911117","https://openalex.org/W4225088396","https://openalex.org/W4226172035","https://openalex.org/W4286008274","https://openalex.org/W4309651013","https://openalex.org/W4309933609","https://openalex.org/W4390582245"],"related_works":["https://openalex.org/W3086036847","https://openalex.org/W3009871867","https://openalex.org/W3094286499","https://openalex.org/W4229046434","https://openalex.org/W2435986133","https://openalex.org/W2327204559","https://openalex.org/W3129254793","https://openalex.org/W2809873931","https://openalex.org/W4386513543","https://openalex.org/W4366283446"],"abstract_inverted_index":{"BACKGROUND:":[0],"Construction":[1],"of":[2,22,52,117,161,246],"kinship":[3,28,47,79,94,105,125,154,211],"matrices":[4,29,48,95,106,212],"among":[5],"individuals":[6],"is":[7,54,171,202],"an":[8,57,66],"important":[9],"step":[10],"for":[11,26,49,151,209],"both":[12],"association":[13,239],"studies":[14,17,240],"and":[15,33,68,102,113,120,156,163,175,179,189,205,217,225,228,238],"prediction":[16],"based":[18,82,123,139,242],"on":[19,83,124,140,243],"different":[20,34,244],"levels":[21,245],"omic":[23,247],"data.":[24,248],"Methods":[25],"constructing":[27],"are":[30],"becoming":[31],"diverse":[32],"methods":[35,150],"have":[36],"their":[37],"specific":[38],"appropriate":[39],"scenes.":[40],"However,":[41],"software":[42,138],"that":[43,73],"can":[44,74,131,180,193],"comprehensively":[45],"calculate":[46],"a":[50,190,203],"variety":[51],"scenarios":[53],"still":[55],"in":[56,97,135,159,173],"urgent":[58],"demand.":[59],"RESULTS:":[60],"In":[61],"this":[62],"study,":[63],"we":[64],"developed":[65,172],"efficient":[67],"user-friendly":[69,206],"python":[70,174],"module,":[71],"PyAGH,":[72],"accomplish":[75],"(1)":[76],"conventional":[77],"additive":[78],"matrces":[80],"construction":[81,96],"pedigree,":[84,214],"genotypes,":[85],"abundance":[86],"data":[87,164,219,227],"from":[88,129,197],"transcriptome":[89,218],"or":[90],"microbiome;":[91],"(2)":[92],"genomic":[93],"combined":[98],"population;":[99],"(3)":[100],"dominant":[101],"epistatic":[103],"effects":[104],"construction;":[107],"(4)":[108],"pedigree":[109],"selection,":[110],"tracing,":[111],"detection":[112],"visualization;":[114],"(5)":[115],"visualization":[116],"cluster,":[118],"heatmap":[119],"PCA":[121],"analysis":[122],"matrices.":[126],"The":[127],"output":[128],"PyAGH":[130,147,170,201],"be":[132,181,194],"easily":[133,182],"integrated":[134],"other":[136,145,168],"mainstream":[137],"users'":[141],"purposes.":[142],"Compared":[143],"with":[144],"softwares,":[146],"integrates":[148],"multiple":[149],"calculating":[152,210],"the":[153],"matrix":[155],"has":[157],"advantages":[158],"terms":[160],"speed":[162],"size":[165],"compared":[166],"to":[167,235],"software.":[169],"C":[176],"+":[177,178],"installed":[183],"by":[184],"pip":[185],"tool.":[186],"Installation":[187],"instructions":[188],"manual":[191],"document":[192],"freely":[195],"available":[196],"https://github.com/zhaow-01/PyAGH":[198],".":[199],"CONCLUSION:":[200],"fast":[204],"Python":[207],"package":[208,231],"using":[213],"genotype,":[215],"microbiome":[216],"as":[220,222],"well":[221],"processing,":[223],"analyzing":[224],"visualizing":[226],"results.":[229],"This":[230],"makes":[232],"it":[233],"easier":[234],"perform":[236],"predictions":[237],"processes":[241]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-20T07:56:41.581041","created_date":"2025-10-10T00:00:00"}
