{"id":"https://openalex.org/W4327811437","doi":"https://doi.org/10.1186/s12859-023-05221-3","title":"LACE 2.0: an interactive R tool for the inference and visualization of longitudinal cancer evolution","display_name":"LACE 2.0: an interactive R tool for the inference and visualization of longitudinal cancer evolution","publication_year":2023,"publication_date":"2023-03-17","ids":{"openalex":"https://openalex.org/W4327811437","doi":"https://doi.org/10.1186/s12859-023-05221-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/36932333"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05221-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05221-3","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s12859-023-05221-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050211211","display_name":"Gianluca Ascolani","orcid":"https://orcid.org/0000-0001-5501-3368"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Gianluca Ascolani","raw_affiliation_strings":["Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy. gianluca.ascolani@unimib.it","Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy. gianluca.ascolani@unimib.it","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049467276","display_name":"Fabrizio Angaroni","orcid":"https://orcid.org/0000-0002-3375-6686"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Fabrizio Angaroni","raw_affiliation_strings":["Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038449865","display_name":"Davide Maspero","orcid":"https://orcid.org/0000-0001-8519-4331"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Davide Maspero","raw_affiliation_strings":["Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059535979","display_name":"Francesco Craighero","orcid":"https://orcid.org/0000-0001-8457-6979"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesco Craighero","raw_affiliation_strings":["Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082060768","display_name":"Narra Lakshmi Sai Bhavesh","orcid":null},"institutions":[{"id":"https://openalex.org/I74796645","display_name":"Birla Institute of Technology and Science, Pilani","ror":"https://ror.org/001p3jz28","country_code":"IN","type":"education","lineage":["https://openalex.org/I74796645"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Narra Lakshmi Sai Bhavesh","raw_affiliation_strings":["Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, Rajasthan, India","Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, Rajasthan, India","institution_ids":["https://openalex.org/I74796645"]},{"raw_affiliation_string":"Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, India","institution_ids":["https://openalex.org/I74796645"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048891781","display_name":"Rocco Piazza","orcid":"https://orcid.org/0000-0003-4198-9620"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Rocco Piazza","raw_affiliation_strings":["Bicocca Bioinformatics Biostatistics and Bioimaging Centre - B4, University of Milan-Bicocca, Vedano al Lambro, Monza, Italy","Department of Medicine and Surgery, University of Milan-Bicocca, University of Milan-Bicocca, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bicocca Bioinformatics Biostatistics and Bioimaging Centre - B4, University of Milan-Bicocca, Vedano al Lambro, Monza, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Medicine and Surgery, University of Milan-Bicocca, University of Milan-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107211303","display_name":"C. Damiani","orcid":null},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Chiara Damiani","raw_affiliation_strings":["Department of Biotechnology and Biosciences, University of Milan-Bicocca, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milan-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022687646","display_name":"Daniele Ramazzotti","orcid":"https://orcid.org/0000-0002-6087-2666"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Daniele Ramazzotti","raw_affiliation_strings":["Department of Medicine and Surgery, University of Milan-Bicocca, University of Milan-Bicocca, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine and Surgery, University of Milan-Bicocca, University of Milan-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037919963","display_name":"Marco Antoniotti","orcid":"https://orcid.org/0000-0002-2823-6838"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Antoniotti","raw_affiliation_strings":["Bicocca Bioinformatics Biostatistics and Bioimaging Centre - B4, University of Milan-Bicocca, Vedano al Lambro, Monza, Italy","Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bicocca Bioinformatics Biostatistics and Bioimaging Centre - B4, University of Milan-Bicocca, Vedano al Lambro, Monza, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055916343","display_name":"Alex Graudenzi","orcid":"https://orcid.org/0000-0001-5452-1918"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alex Graudenzi","raw_affiliation_strings":["Bicocca Bioinformatics Biostatistics and Bioimaging Centre - B4, University of Milan-Bicocca, Vedano al Lambro, Monza, Italy","Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bicocca Bioinformatics Biostatistics and Bioimaging Centre - B4, University of Milan-Bicocca, Vedano al Lambro, Monza, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5050211211"],"corresponding_institution_ids":["https://openalex.org/I66752286"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":2441,"currency":"EUR","value_usd":2632},"fwci":1.3873,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.82416226,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"24","issue":"1","first_page":"99","last_page":"99"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9399999976158142,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9399999976158142,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.015300000086426735,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.004100000020116568,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7081453204154968},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.6961334943771362},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6671135425567627},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6462899446487427},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5627137422561646},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5132898688316345},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.5095124840736389},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.48344430327415466},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.44708094000816345},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4219302535057068},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40614253282546997},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4041225016117096},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32261955738067627},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17383605241775513},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10507950186729431}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7081453204154968},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.6961334943771362},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6671135425567627},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6462899446487427},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5627137422561646},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5132898688316345},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.5095124840736389},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.48344430327415466},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.44708094000816345},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4219302535057068},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40614253282546997},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4041225016117096},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32261955738067627},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17383605241775513},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10507950186729431},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D002999","descriptor_name":"Clone Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002999","descriptor_name":"Clone Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002999","descriptor_name":"Clone Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-023-05221-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05221-3","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36932333","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36932333","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:boa.unimib.it:10281/406055","is_oa":true,"landing_page_url":"https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-023-05221-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05221-3","source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10022199","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10022199","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10022199/pdf/12859_2023_Article_5221.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:a9d04b1a7dec40fd9e89ecb67e866a82","is_oa":true,"landing_page_url":"https://doaj.org/article/a9d04b1a7dec40fd9e89ecb67e866a82","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-17 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05221-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05221-3","pdf_url":null,"source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.6800000071525574}],"awards":[{"id":"https://openalex.org/G3837241279","display_name":null,"funder_award_id":"22790","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"},{"id":"https://openalex.org/G5110015426","display_name":null,"funder_award_id":"22790","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G8359958040","display_name":null,"funder_award_id":"22082","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"}],"funders":[{"id":"https://openalex.org/F4320319985","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67"},{"id":"https://openalex.org/F4320321610","display_name":"Universit\u00e0 degli Studi di Milano-Bicocca","ror":"https://ror.org/01ynf4891"},{"id":"https://openalex.org/F4320323054","display_name":"Associazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1984068087","https://openalex.org/W2179127114","https://openalex.org/W2346273585","https://openalex.org/W2566723262","https://openalex.org/W2619065478","https://openalex.org/W2786268518","https://openalex.org/W2884607428","https://openalex.org/W2922899473","https://openalex.org/W2949708679","https://openalex.org/W2969524309","https://openalex.org/W3089871235","https://openalex.org/W3131055609","https://openalex.org/W4200139018","https://openalex.org/W4205247356"],"related_works":["https://openalex.org/W2006240110","https://openalex.org/W2909972699","https://openalex.org/W2751110224","https://openalex.org/W2039602384","https://openalex.org/W4312613920","https://openalex.org/W2288407995","https://openalex.org/W2140525502","https://openalex.org/W2340870865","https://openalex.org/W2147036980","https://openalex.org/W2520625499"],"abstract_inverted_index":{"BACKGROUND:":[0],"Longitudinal":[1,71],"single-cell":[2],"sequencing":[3],"experiments":[4],"of":[5,29,43,50,57,73,101,118],"patient-derived":[6],"models":[7],"are":[8,21],"increasingly":[9],"employed":[10],"to":[11,23,38,113,134],"investigate":[12],"cancer":[13],"evolution.":[14],"In":[15],"this":[16,60,119],"context,":[17],"robust":[18],"computational":[19],"methods":[20],"needed":[22],"properly":[24],"exploit":[25],"the":[26,40,48,55,66,70,88,132,151],"mutational":[27],"profiles":[28],"single":[30],"cells":[31],"generated":[32],"via":[33],"variant":[34,103],"calling,":[35],"in":[36,138],"order":[37],"reconstruct":[39],"evolutionary":[41],"history":[42],"a":[44,106,123],"tumor":[45],"and":[46,110,125,149],"characterize":[47],"impact":[49],"therapeutic":[51],"strategies,":[52],"such":[53],"as":[54],"administration":[56],"drugs.":[58],"To":[59],"end,":[61],"we":[62],"have":[63],"recently":[64],"developed":[65],"LACE":[67,78],"framework":[68,90],"for":[69,99],"Analysis":[72],"Cancer":[74],"Evolution.":[75],"RESULTS:":[76],"The":[77,153],"2.0":[79],"release":[80],"aimed":[81],"at":[82],"inferring":[83],"longitudinal":[84],"clonal":[85],"trees":[86],"enhances":[87],"original":[89],"with":[91],"new":[92,124],"key":[93],"functionalities:":[94],"an":[95],"improved":[96],"data":[97],"management":[98],"preprocessing":[100],"standard":[102],"calling":[104],"data,":[105],"reworked":[107],"inference":[108],"engine,":[109],"direct":[111],"connection":[112],"public":[114],"databases.":[115],"CONCLUSIONS:":[116],"All":[117],"is":[120,155],"accessible":[121],"through":[122],"interactive":[126],"Shiny":[127],"R":[128],"graphical":[129],"interface":[130],"offering":[131],"possibility":[133],"apply":[135],"filters":[136],"helpful":[137],"discriminating":[139],"relevant":[140],"or":[141],"potential":[142],"driver":[143],"mutations,":[144],"set":[145],"up":[146],"inferential":[147],"parameters,":[148],"visualize":[150],"results.":[152],"software":[154],"available":[156],"at:":[157],"github.com/BIMIB-DISCo/LACE.":[158]},"counts_by_year":[{"year":2025,"cited_by_count":6}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
