{"id":"https://openalex.org/W4318475513","doi":"https://doi.org/10.1186/s12859-023-05155-w","title":"GENTLE: a novel bioinformatics tool for generating features and building classifiers from T cell repertoire cancer data","display_name":"GENTLE: a novel bioinformatics tool for generating features and building classifiers from T cell repertoire cancer data","publication_year":2023,"publication_date":"2023-01-30","ids":{"openalex":"https://openalex.org/W4318475513","doi":"https://doi.org/10.1186/s12859-023-05155-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/36717789"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05155-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05155-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05155-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05155-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076943860","display_name":"Dhiego Souto Andrade","orcid":null},"institutions":[{"id":"https://openalex.org/I35046152","display_name":"Universidade Federal do Rio Grande do Norte","ror":"https://ror.org/04wn09761","country_code":"BR","type":"education","lineage":["https://openalex.org/I35046152"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Dhiego Souto Andrade","raw_affiliation_strings":["Bioinformatics Multidisciplinary Environment (BioME), Metropole Digital Institute (IMD), Federal University of Rio Grande Do Norte (UFRN), Natal, 59078-970, Brazil. dhiego@systemsbiomed.org","Bioinformatics Multidisciplinary Environment (BioME), Metropole Digital Institute (IMD), Federal University of Rio Grande Do Norte (UFRN), Natal, 59078-970, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Multidisciplinary Environment (BioME), Metropole Digital Institute (IMD), Federal University of Rio Grande Do Norte (UFRN), Natal, 59078-970, Brazil. dhiego@systemsbiomed.org","institution_ids":[]},{"raw_affiliation_string":"Bioinformatics Multidisciplinary Environment (BioME), Metropole Digital Institute (IMD), Federal University of Rio Grande Do Norte (UFRN), Natal, 59078-970, Brazil","institution_ids":["https://openalex.org/I35046152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031741464","display_name":"Patrick Terrematte","orcid":"https://orcid.org/0000-0002-0385-0030"},"institutions":[{"id":"https://openalex.org/I35046152","display_name":"Universidade Federal do Rio Grande do Norte","ror":"https://ror.org/04wn09761","country_code":"BR","type":"education","lineage":["https://openalex.org/I35046152"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Patrick Terrematte","raw_affiliation_strings":["Bioinformatics Multidisciplinary Environment (BioME), Metropole Digital Institute (IMD), Federal University of Rio Grande Do Norte (UFRN), Natal, 59078-970, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Multidisciplinary Environment (BioME), Metropole Digital Institute (IMD), Federal University of Rio Grande Do Norte (UFRN), Natal, 59078-970, Brazil","institution_ids":["https://openalex.org/I35046152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012587825","display_name":"C\u00e9sar Renn\u00f3\u2010Costa","orcid":"https://orcid.org/0000-0003-0417-8108"},"institutions":[{"id":"https://openalex.org/I35046152","display_name":"Universidade Federal do Rio Grande do Norte","ror":"https://ror.org/04wn09761","country_code":"BR","type":"education","lineage":["https://openalex.org/I35046152"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"C\u00e9sar Renn\u00f3-Costa","raw_affiliation_strings":["Bioinformatics Multidisciplinary Environment (BioME), Metropole Digital Institute (IMD), Federal University of Rio Grande Do Norte (UFRN), Natal, 59078-970, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Multidisciplinary Environment (BioME), Metropole Digital Institute (IMD), Federal University of Rio Grande Do Norte (UFRN), Natal, 59078-970, Brazil","institution_ids":["https://openalex.org/I35046152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031381890","display_name":"Alona Zilberberg","orcid":null},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Alona Zilberberg","raw_affiliation_strings":["The Mina & Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Mina & Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel","institution_ids":["https://openalex.org/I13955877"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010519247","display_name":"Sol Efroni","orcid":"https://orcid.org/0000-0001-7927-6349"},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Sol Efroni","raw_affiliation_strings":["The Mina & Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Mina & Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel","institution_ids":["https://openalex.org/I13955877"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5076943860"],"corresponding_institution_ids":["https://openalex.org/I35046152"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.4421,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.70916427,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"24","issue":"1","first_page":"32","last_page":"32"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.6251000165939331,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.6251000165939331,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.14329999685287476,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.0697999969124794,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/repertoire","display_name":"Repertoire","score":0.941710352897644},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5807382464408875},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5783974528312683},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48848044872283936},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3809015154838562},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.37853920459747314},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3318987786769867},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2975766062736511}],"concepts":[{"id":"https://openalex.org/C2778473898","wikidata":"https://www.wikidata.org/wiki/Q2145110","display_name":"Repertoire","level":2,"score":0.941710352897644},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5807382464408875},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5783974528312683},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48848044872283936},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3809015154838562},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.37853920459747314},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3318987786769867},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2975766062736511},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-023-05155-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05155-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05155-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36717789","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36717789","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9885559","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9885559","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9885559/pdf/12859_2023_Article_5155.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:5cc1eba731e74b2e92b5030c43423a74","is_oa":true,"landing_page_url":"https://doaj.org/article/5cc1eba731e74b2e92b5030c43423a74","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-14 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05155-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-023-05155-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05155-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2823776494","display_name":null,"funder_award_id":"88887","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G4364806843","display_name":null,"funder_award_id":"88887.600071/2021-0","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G4413557700","display_name":null,"funder_award_id":"88887.161820/2017-0","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G5272573338","display_name":null,"funder_award_id":"2017-0","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G6737626148","display_name":null,"funder_award_id":"88887.161820/2017-0, 88887.469283/2019-00 and 88887.600071/2021-0","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"}],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320321449","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495"},{"id":"https://openalex.org/F4320325185","display_name":"Universidade Federal do Rio Grande do Norte","ror":"https://ror.org/04wn09761"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4318475513.pdf"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W135571511","https://openalex.org/W1556334181","https://openalex.org/W1991362481","https://openalex.org/W2001141328","https://openalex.org/W2029525307","https://openalex.org/W2070150264","https://openalex.org/W2083634811","https://openalex.org/W2089041106","https://openalex.org/W2089468765","https://openalex.org/W2113392525","https://openalex.org/W2123649031","https://openalex.org/W2131987814","https://openalex.org/W2135253885","https://openalex.org/W2136487516","https://openalex.org/W2138968719","https://openalex.org/W2151558930","https://openalex.org/W2185265351","https://openalex.org/W2339339536","https://openalex.org/W2512804703","https://openalex.org/W2518845767","https://openalex.org/W2766125827","https://openalex.org/W2800043153","https://openalex.org/W2900841241","https://openalex.org/W2904079529","https://openalex.org/W2905562353","https://openalex.org/W2905984083","https://openalex.org/W2909634875","https://openalex.org/W2911871569","https://openalex.org/W2945020349","https://openalex.org/W2979330275","https://openalex.org/W2980787744","https://openalex.org/W3002623081","https://openalex.org/W3040324319","https://openalex.org/W3041928334","https://openalex.org/W3082731516","https://openalex.org/W3082739140","https://openalex.org/W3093424538","https://openalex.org/W3123650589","https://openalex.org/W3131585557","https://openalex.org/W3139321392","https://openalex.org/W3176460341","https://openalex.org/W3185560091","https://openalex.org/W3190796640","https://openalex.org/W3193650535","https://openalex.org/W3196175936","https://openalex.org/W3197209004","https://openalex.org/W3199298121","https://openalex.org/W3211434666","https://openalex.org/W4206941971","https://openalex.org/W4255658650","https://openalex.org/W4285891496","https://openalex.org/W4292634236"],"related_works":["https://openalex.org/W3120300186","https://openalex.org/W2084831119","https://openalex.org/W4255048859","https://openalex.org/W4378635687","https://openalex.org/W2278124082","https://openalex.org/W2055491483","https://openalex.org/W2019758535","https://openalex.org/W2026305825","https://openalex.org/W2093107729","https://openalex.org/W2949171194"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1],"the":[2,150,153,167,173,178,184,205],"global":[3],"effort":[4],"to":[5,63,94,98,108,147,203,221],"discover":[6,95,222],"biomarkers":[7],"for":[8,35,81,112],"cancer":[9,30],"prognosis,":[10],"prediction":[11],"tools":[12,43],"have":[13],"become":[14],"essential":[15],"resources.":[16],"TCR":[17,56,91,216],"(T":[18],"cell":[19,77],"receptor)":[20],"repertoires":[21,121],"contain":[22],"important":[23,52,96],"features":[24,53,80,144,158,224],"that":[25,44,89,142],"differentiate":[26,33],"healthy":[27,133],"controls":[28,134],"from":[29,132,177,225],"patients":[31,36,136],"or":[32,164],"outcomes":[34,66],"being":[37],"treated":[38],"with":[39,105,120,137,156,172,183,215],"different":[40],"drugs.":[41],"Considering,":[42],"can":[45],"easily":[46],"and":[47,50,59,102,107,127,176,193,196,201,219,228,237],"quickly":[48,109],"generate":[49,110],"identify":[51],"out":[54],"of":[55,75,122],"repertoire":[57,79,92,169,180,217],"data":[58,113,218,227],"build":[60,229],"accurate":[61,230],"classifiers":[62,154],"predict":[64],"future":[65],"are":[67],"essential.":[68],"RESULTS:":[69],"This":[70],"paper":[71,189],"introduces":[72],"GENTLE":[73,195,208,232],"(GENerator":[74],"T":[76,125,130],"receptor":[78],"machine":[82],"LEarning):":[83],"an":[84],"open-source,":[85],"user-friendly":[86],"web-application":[87],"tool":[88],"allows":[90],"researchers":[93],"features;":[97],"create":[99],"classifier":[100],"models":[101],"evaluate":[103],"them":[104],"metrics;":[106],"visualizations":[111],"interpretations.":[114],"We":[115,140],"performed":[116],"a":[117,198],"case":[118,199],"study":[119,200],"TRegs":[123,168,185],"(regulatory":[124],"cells)":[126,131],"TConvs":[128,174,179],"(conventional":[129],"versus":[135],"breast":[138],"cancer.":[139],"showed":[141],"diversity":[143],"were":[145],"able":[146],"distinguish":[148],"between":[149],"groups.":[151],"Moreover,":[152],"built":[155],"these":[157,226],"could":[159],"correctly":[160],"classify":[161],"samples":[162],"('Healthy'":[163],"'Breast":[165],"Cancer')from":[166],"when":[170,181],"trained":[171,182],"repertoire,":[175],"repertoire.":[186],"CONCLUSION:":[187],"The":[188],"walks":[190],"through":[191],"installing":[192],"using":[194],"presents":[197],"results":[202],"demonstrate":[204],"application's":[206],"utility.":[207],"is":[209,233],"geared":[210],"towards":[211],"any":[212],"researcher":[213],"working":[214],"aims":[220],"predictive":[223],"classifiers.":[231],"available":[234],"on":[235],"https://github.com/dhiego22/gentle":[236],"https://share.streamlit.io/dhiego22/gentle/main/gentle.py":[238],".":[239]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
