{"id":"https://openalex.org/W4321004228","doi":"https://doi.org/10.1186/s12859-023-05154-x","title":"ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole-genome sequencing data","display_name":"ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole-genome sequencing data","publication_year":2023,"publication_date":"2023-02-15","ids":{"openalex":"https://openalex.org/W4321004228","doi":"https://doi.org/10.1186/s12859-023-05154-x","pmid":"https://pubmed.ncbi.nlm.nih.gov/36792982"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-023-05154-x","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-023-05154-x","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-023-05154-x.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-023-05154-x.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082113372","display_name":"Mikhail Gudkov","orcid":"https://orcid.org/0000-0001-7008-1852"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I19514445","display_name":"Victor Chang Cardiac Research Institute","ror":"https://ror.org/03trvqr13","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I19514445"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210123488","display_name":"St Vincent's Clinic","ror":"https://ror.org/02rthxz10","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210123488"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Mikhail Gudkov","raw_affiliation_strings":["School of Biomedical Engineering, The University of Sydney, Sydney, NSW, 2006, Australia","St Vincent's Clinical Campus, School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Sydney, NSW, 2010, Australia","Victor Chang Cardiac Research Institute, Sydney, NSW, 2010, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, The University of Sydney, Sydney, NSW, 2006, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"St Vincent's Clinical Campus, School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Sydney, NSW, 2010, Australia","institution_ids":["https://openalex.org/I4210123488","https://openalex.org/I31746571"]},{"raw_affiliation_string":"Victor Chang Cardiac Research Institute, Sydney, NSW, 2010, Australia","institution_ids":["https://openalex.org/I19514445"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060185126","display_name":"L Thibaut","orcid":"https://orcid.org/0000-0003-3813-682X"},"institutions":[{"id":"https://openalex.org/I19514445","display_name":"Victor Chang Cardiac Research Institute","ror":"https://ror.org/03trvqr13","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I19514445"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Lo\u00efc Thibaut","raw_affiliation_strings":["School of Mathematics and Statistics, UNSW Sydney, Sydney, NSW, 2052, Australia","Victor Chang Cardiac Research Institute, Sydney, NSW, 2010, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, UNSW Sydney, Sydney, NSW, 2052, Australia","institution_ids":["https://openalex.org/I31746571"]},{"raw_affiliation_string":"Victor Chang Cardiac Research Institute, Sydney, NSW, 2010, Australia","institution_ids":["https://openalex.org/I19514445"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030777395","display_name":"Matloob Khushi","orcid":"https://orcid.org/0000-0001-7792-2327"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Matloob Khushi","raw_affiliation_strings":["School of Computer Science, The University of Sydney, Sydney, NSW, 2006, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, The University of Sydney, Sydney, NSW, 2006, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035989300","display_name":"Gillian M. Blue","orcid":"https://orcid.org/0000-0002-1480-9535"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I2802384191","display_name":"Children's Hospital at Westmead","ror":"https://ror.org/05k0s5494","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2802384191"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Gillian M. Blue","raw_affiliation_strings":["Heart Centre for Children, The Children's Hospital at Westmead, Sydney, NSW, 2145, Australia","Sydney Medical School, The University of Sydney, Sydney, NSW, 2006, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Heart Centre for Children, The Children's Hospital at Westmead, Sydney, NSW, 2145, Australia","institution_ids":["https://openalex.org/I2802384191"]},{"raw_affiliation_string":"Sydney Medical School, The University of Sydney, Sydney, NSW, 2006, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001192939","display_name":"David S. Winlaw","orcid":"https://orcid.org/0000-0001-8005-3361"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I2802384191","display_name":"Children's Hospital at Westmead","ror":"https://ror.org/05k0s5494","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2802384191"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"David S. Winlaw","raw_affiliation_strings":["Heart Centre for Children, The Children's Hospital at Westmead, Sydney, NSW, 2145, Australia","Sydney Medical School, The University of Sydney, Sydney, NSW, 2006, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Heart Centre for Children, The Children's Hospital at Westmead, Sydney, NSW, 2145, Australia","institution_ids":["https://openalex.org/I2802384191"]},{"raw_affiliation_string":"Sydney Medical School, The University of Sydney, Sydney, NSW, 2006, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024781173","display_name":"Sally L. Dunwoodie","orcid":"https://orcid.org/0000-0002-2069-7349"},"institutions":[{"id":"https://openalex.org/I19514445","display_name":"Victor Chang Cardiac Research Institute","ror":"https://ror.org/03trvqr13","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I19514445"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210123488","display_name":"St Vincent's Clinic","ror":"https://ror.org/02rthxz10","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210123488"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sally L. Dunwoodie","raw_affiliation_strings":["School of Biotechnology and Biomolecular Sciences, UNSW Sydney, Sydney, NSW, 2052, Australia","St Vincent's Clinical Campus, School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Sydney, NSW, 2010, Australia","Victor Chang Cardiac Research Institute, Sydney, NSW, 2010, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biotechnology and Biomolecular Sciences, UNSW Sydney, Sydney, NSW, 2052, Australia","institution_ids":["https://openalex.org/I31746571"]},{"raw_affiliation_string":"St Vincent's Clinical Campus, School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Sydney, NSW, 2010, Australia","institution_ids":["https://openalex.org/I4210123488","https://openalex.org/I31746571"]},{"raw_affiliation_string":"Victor Chang Cardiac Research Institute, Sydney, NSW, 2010, Australia","institution_ids":["https://openalex.org/I19514445"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009054460","display_name":"Eleni Giannoulatou","orcid":"https://orcid.org/0000-0002-7084-6736"},"institutions":[{"id":"https://openalex.org/I19514445","display_name":"Victor Chang Cardiac Research Institute","ror":"https://ror.org/03trvqr13","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I19514445"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210123488","display_name":"St Vincent's Clinic","ror":"https://ror.org/02rthxz10","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210123488"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Eleni Giannoulatou","raw_affiliation_strings":["St Vincent's Clinical Campus, School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Sydney, NSW, 2010, Australia. E.Giannoulatou@victorchang.edu.au","Victor Chang Cardiac Research Institute, Sydney, NSW, 2010, Australia. E.Giannoulatou@victorchang.edu.au","St Vincent's Clinical Campus, School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Sydney, NSW, 2010, Australia"],"raw_orcid":"https://orcid.org/0000-0002-7084-6736","affiliations":[{"raw_affiliation_string":"St Vincent's Clinical Campus, School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Sydney, NSW, 2010, Australia. E.Giannoulatou@victorchang.edu.au","institution_ids":["https://openalex.org/I4210123488"]},{"raw_affiliation_string":"Victor Chang Cardiac Research Institute, Sydney, NSW, 2010, Australia. E.Giannoulatou@victorchang.edu.au","institution_ids":["https://openalex.org/I19514445"]},{"raw_affiliation_string":"St Vincent's Clinical Campus, School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Sydney, NSW, 2010, Australia","institution_ids":["https://openalex.org/I4210123488","https://openalex.org/I31746571"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.287,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.67237738,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"24","issue":"1","first_page":"49","last_page":"49"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.49799999594688416,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.49799999594688416,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.3601999878883362,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.08380000293254852,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/copy-number-variation","display_name":"Copy-number variation","score":0.8448582887649536},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"Whole genome sequencing","score":0.512113094329834},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4786185622215271},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.42966049909591675},{"id":"https://openalex.org/keywords/structural-variation","display_name":"Structural variation","score":0.42646294832229614},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.4238506257534027},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.39911431074142456},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3901172876358032},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3703748285770416},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3266593813896179},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14557725191116333},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12232935428619385}],"concepts":[{"id":"https://openalex.org/C120821319","wikidata":"https://www.wikidata.org/wiki/Q1501491","display_name":"Copy-number variation","level":4,"score":0.8448582887649536},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.512113094329834},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4786185622215271},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.42966049909591675},{"id":"https://openalex.org/C151020129","wikidata":"https://www.wikidata.org/wiki/Q7625067","display_name":"Structural variation","level":4,"score":0.42646294832229614},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.4238506257534027},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.39911431074142456},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3901172876358032},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3703748285770416},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3266593813896179},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14557725191116333},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12232935428619385}],"mesh":[{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-023-05154-x","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-023-05154-x","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-023-05154-x.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36792982","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36792982","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:bura.brunel.ac.uk:2438/26070","is_oa":true,"landing_page_url":"https://bura.brunel.ac.uk/handle/2438/26070","pdf_url":"http://bura.brunel.ac.uk/bitstream/2438/26070/1/FullText.pdf","source":{"id":"https://openalex.org/S4306401473","display_name":"Brunel University Research Archive (BURA) (Brunel University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59433898","host_organization_name":"Brunel University of London","host_organization_lineage":["https://openalex.org/I59433898"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9930243","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9930243","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9930243/pdf/12859_2023_Article_5154.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:19d4673faba54091871027a100546a87","is_oa":true,"landing_page_url":"https://doaj.org/article/19d4673faba54091871027a100546a87","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 24, Iss 1, Pp 1-10 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-023-05154-x","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-023-05154-x","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-023-05154-x.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1986197071","display_name":null,"funder_award_id":"101894","funder_id":"https://openalex.org/F4320320442","funder_display_name":"National Heart Foundation of Australia"},{"id":"https://openalex.org/G2693792669","display_name":null,"funder_award_id":"1135886","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G3460084227","display_name":null,"funder_award_id":"1162878","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G7950585979","display_name":null,"funder_award_id":"101204","funder_id":"https://openalex.org/F4320320442","funder_display_name":"National Heart Foundation of Australia"}],"funders":[{"id":"https://openalex.org/F4320320442","display_name":"National Heart Foundation of Australia","ror":"https://ror.org/039d9wr27"},{"id":"https://openalex.org/F4320320588","display_name":"Office of Health and Medical Research","ror":"https://ror.org/03tb4gf50"},{"id":"https://openalex.org/F4320325396","display_name":"NSW Ministry of Health","ror":null},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4321004228.pdf","grobid_xml":"https://content.openalex.org/works/W4321004228.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1986002337","https://openalex.org/W1988033469","https://openalex.org/W2040002798","https://openalex.org/W2097331151","https://openalex.org/W2104549677","https://openalex.org/W2115414474","https://openalex.org/W2119124845","https://openalex.org/W2121743948","https://openalex.org/W2122168521","https://openalex.org/W2140888103","https://openalex.org/W2144691093","https://openalex.org/W2150506261","https://openalex.org/W2159979077","https://openalex.org/W2168440186","https://openalex.org/W2235737683","https://openalex.org/W2782424591","https://openalex.org/W2800997190","https://openalex.org/W2895323567","https://openalex.org/W2901307231","https://openalex.org/W2946985224","https://openalex.org/W2948024819","https://openalex.org/W2949522823","https://openalex.org/W3015200024","https://openalex.org/W3034581902","https://openalex.org/W3212059340"],"related_works":["https://openalex.org/W2043074282","https://openalex.org/W2203319208","https://openalex.org/W3134412476","https://openalex.org/W2160911017","https://openalex.org/W2005276393","https://openalex.org/W2091911799","https://openalex.org/W3005131427","https://openalex.org/W2029233263","https://openalex.org/W2142819802","https://openalex.org/W2465436886"],"abstract_inverted_index":{"BACKGROUND:":[0],"A":[1],"wide":[2],"range":[3],"of":[4,11,23,62,68,74,97,169,191],"tools":[5],"are":[6,33,41],"available":[7,51],"for":[8,59,93,177],"the":[9,60,66,94,189],"detection":[10],"copy":[12],"number":[13],"variants":[14,40,117,156],"(CNVs)":[15],"from":[16,101],"whole-genome":[17],"sequencing":[18,182],"(WGS)":[19],"data.":[20,103],"However,":[21],"none":[22],"them":[24],"focus":[25],"on":[26,132,166],"clinically-relevant":[27],"CNVs,":[28],"such":[29],"as":[30],"those":[31],"that":[32],"associated":[34,122],"with":[35,106,118],"known":[36],"genetic":[37],"syndromes.":[38],"Such":[39],"often":[42],"large":[43,98,167,185],"in":[44,180],"size,":[45],"typically":[46],"1-5":[47],"Mb,":[48],"but":[49],"currently":[50],"CNV":[52],"callers":[53],"have":[54],"been":[55],"developed":[56],"and":[57,114,128,137,160],"benchmarked":[58,126],"discovery":[61],"smaller":[63],"variants.":[64],"Thus,":[65],"ability":[67],"these":[69],"programs":[70,131],"to":[71,147,163],"detect":[72],"tens":[73],"real":[75,136],"syndromic":[76,123,139],"CNVs":[77,100,140,186],"remains":[78],"largely":[79],"unknown.":[80],"RESULTS:":[81],"Here":[82],"we":[83],"present":[84],"ConanVarvar,":[85],"a":[86,90,133,174],"tool":[87],"which":[88],"implements":[89],"complete":[91],"workflow":[92],"targeted":[95],"analysis":[96,179],"germline":[99],"WGS":[102],"ConanVarvar":[104,127,150,172],"comes":[105],"an":[107],"intuitive":[108],"R":[109],"Shiny":[110],"graphical":[111],"user":[112],"interface":[113],"annotates":[115],"identified":[116],"information":[119],"about":[120],"56":[121],"conditions.":[124],"We":[125],"four":[129],"other":[130,148],"dataset":[134],"containing":[135],"simulated":[138],"larger":[141],"than":[142],"1":[143],"Mb.":[144],"In":[145],"comparison":[146],"tools,":[149],"reports":[151],"10-30":[152],"times":[153],"less":[154],"false-positive":[155],"without":[157],"compromising":[158],"sensitivity":[159],"is":[161,173],"quicker":[162],"run,":[164],"especially":[165],"batches":[168],"samples.":[170],"CONCLUSIONS:":[171],"useful":[175],"instrument":[176],"primary":[178],"disease":[181],"studies,":[183],"where":[184],"could":[187],"be":[188],"cause":[190],"disease.":[192]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
