{"id":"https://openalex.org/W4313364851","doi":"https://doi.org/10.1186/s12859-022-05129-4","title":"Nonlinear physics opens a new paradigm for accurate transcription start site prediction","display_name":"Nonlinear physics opens a new paradigm for accurate transcription start site prediction","publication_year":2022,"publication_date":"2022-12-30","ids":{"openalex":"https://openalex.org/W4313364851","doi":"https://doi.org/10.1186/s12859-022-05129-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/36585618"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-05129-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-05129-4","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-022-05129-4.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-022-05129-4.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039605195","display_name":"Jos\u00e9 A. Barbero\u2010Aparicio","orcid":"https://orcid.org/0000-0002-3269-0806"},"institutions":[{"id":"https://openalex.org/I46176106","display_name":"Universidad de Burgos","ror":"https://ror.org/049da5t36","country_code":"ES","type":"education","lineage":["https://openalex.org/I46176106"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Antonio Barbero-Aparicio","raw_affiliation_strings":["Departamento de Inform\u00e1tica, Universidad de Burgos, Avda. de Cantabria s/n, 09006, Burgos, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Inform\u00e1tica, Universidad de Burgos, Avda. de Cantabria s/n, 09006, Burgos, Spain","institution_ids":["https://openalex.org/I46176106"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034302327","display_name":"Santiago Cuesta\u2010L\u00f3pez","orcid":"https://orcid.org/0000-0002-7401-3889"},"institutions":[{"id":"https://openalex.org/I4210123620","display_name":"Junta de Castilla y Le\u00f3n","ror":"https://ror.org/02s8dab97","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210123620"]},{"id":"https://openalex.org/I46176106","display_name":"Universidad de Burgos","ror":"https://ror.org/049da5t36","country_code":"ES","type":"education","lineage":["https://openalex.org/I46176106"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Santiago Cuesta-Lopez","raw_affiliation_strings":["ICAMCyL Foundation, Internacional Center for Advanced Materials and Raw Materials of Castilla y Le\u00f3n, Le\u00f3n Technology Park, main building, first floor, offices 106-108, C/Julia Morros s/n, Armunia, 24009, Le\u00f3n, Spain","Universidad de Burgos, Hospital del Rey, s/n, 09001, Burgos, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICAMCyL Foundation, Internacional Center for Advanced Materials and Raw Materials of Castilla y Le\u00f3n, Le\u00f3n Technology Park, main building, first floor, offices 106-108, C/Julia Morros s/n, Armunia, 24009, Le\u00f3n, Spain","institution_ids":["https://openalex.org/I4210123620"]},{"raw_affiliation_string":"Universidad de Burgos, Hospital del Rey, s/n, 09001, Burgos, Spain","institution_ids":["https://openalex.org/I46176106"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013580074","display_name":"C\u00e9sar Garc\u00eda\u2010Osorio","orcid":"https://orcid.org/0000-0002-1206-1084"},"institutions":[{"id":"https://openalex.org/I46176106","display_name":"Universidad de Burgos","ror":"https://ror.org/049da5t36","country_code":"ES","type":"education","lineage":["https://openalex.org/I46176106"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"C\u00e9sar Ignacio Garc\u00eda-Osorio","raw_affiliation_strings":["Departamento de Inform\u00e1tica, Universidad de Burgos, Avda. de Cantabria s/n, 09006, Burgos, Spain. cgosorio@ubu.es","Departamento de Inform\u00e1tica, Universidad de Burgos, Avda. de Cantabria s/n, 09006, Burgos, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Inform\u00e1tica, Universidad de Burgos, Avda. de Cantabria s/n, 09006, Burgos, Spain. cgosorio@ubu.es","institution_ids":["https://openalex.org/I46176106"]},{"raw_affiliation_string":"Departamento de Inform\u00e1tica, Universidad de Burgos, Avda. de Cantabria s/n, 09006, Burgos, Spain","institution_ids":["https://openalex.org/I46176106"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043133854","display_name":"Javier P\u00e9rez-Rodr\u00edguez","orcid":"https://orcid.org/0000-0002-0437-3264"},"institutions":[{"id":"https://openalex.org/I243381257","display_name":"Universidad Loyola Andaluc\u00eda","ror":"https://ror.org/0075gfd51","country_code":"ES","type":"education","lineage":["https://openalex.org/I243381257"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Javier P\u00e9rez-Rodr\u00edguez","raw_affiliation_strings":["Departamento de M\u00e9todos Cuantitativos, Universidad de Loyola Andaluc\u00eda, Escritor Castilla Aguayo, 4, 14004, C\u00f3rdoba, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de M\u00e9todos Cuantitativos, Universidad de Loyola Andaluc\u00eda, Escritor Castilla Aguayo, 4, 14004, C\u00f3rdoba, Spain","institution_ids":["https://openalex.org/I243381257"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011401194","display_name":"Nicol\u00e1s Garc\u00eda\u2010Pedrajas","orcid":"https://orcid.org/0000-0002-4488-6849"},"institutions":[{"id":"https://openalex.org/I53110688","display_name":"University of C\u00f3rdoba","ror":"https://ror.org/05yc77b46","country_code":"ES","type":"education","lineage":["https://openalex.org/I53110688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Nicol\u00e1s Garc\u00eda-Pedrajas","raw_affiliation_strings":["Department of Computing and Numerical Analysis, University of C\u00f3rdoba, Edificio Albert Einstein, Campus de Rabanales, 14071, C\u00f3rdoba, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing and Numerical Analysis, University of C\u00f3rdoba, Edificio Albert Einstein, Campus de Rabanales, 14071, C\u00f3rdoba, Spain","institution_ids":["https://openalex.org/I53110688"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5013580074"],"corresponding_institution_ids":["https://openalex.org/I46176106"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0838,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.43194045,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"23","issue":"1","first_page":"565","last_page":"565"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5529664158821106},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5082842707633972},{"id":"https://openalex.org/keywords/nonlinear-system","display_name":"Nonlinear system","score":0.4780043661594391},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43796151876449585},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42183277010917664},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.420211523771286},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4103374183177948},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3473299741744995},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2887120544910431},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14200571179389954},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.13034868240356445},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.10523533821105957}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5529664158821106},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5082842707633972},{"id":"https://openalex.org/C158622935","wikidata":"https://www.wikidata.org/wiki/Q660848","display_name":"Nonlinear system","level":2,"score":0.4780043661594391},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43796151876449585},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42183277010917664},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.420211523771286},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4103374183177948},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3473299741744995},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2887120544910431},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14200571179389954},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.13034868240356445},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.10523533821105957}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-022-05129-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-05129-4","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-022-05129-4.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36585618","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36585618","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:riubu.ubu.es:10259/7337","is_oa":true,"landing_page_url":"http://hdl.handle.net/10259/7337","pdf_url":"https://riubu.ubu.es/bitstream/10259/7337/1/Barbero-bmcb_2022.pdf","source":{"id":"https://openalex.org/S4306400051","display_name":"Repositorio Institucional de la Universidad de Burgos (University of Burgos)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I46176106","host_organization_name":"Universidad de Burgos","host_organization_lineage":["https://openalex.org/I46176106"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:71d7c59101ff4dd8b736cb5aa24692c7","is_oa":false,"landing_page_url":"https://doaj.org/article/71d7c59101ff4dd8b736cb5aa24692c7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-21 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9801560","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9801560","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-05129-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-05129-4","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-022-05129-4.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1580914316","display_name":null,"funder_award_id":"PID2019-109481GB-I00/AEI/q10.13039/501100011033","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G161914945","display_name":null,"funder_award_id":"UCO-1264182","funder_id":"https://openalex.org/F4320326754","funder_display_name":"Junta de Andaluc\u00eda"},{"id":"https://openalex.org/G2262748287","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3681454997","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4042783231","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5555131222","display_name":null,"funder_award_id":"PID2019","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G5635532810","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G7266728691","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G8497050386","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G8516412140","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G8684520763","display_name":null,"funder_award_id":"PID2019","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320315062","display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades","ror":null},{"id":"https://openalex.org/F4320319138","display_name":"Universidad de Burgos","ror":"https://ror.org/049da5t36"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320326754","display_name":"Junta de Andaluc\u00eda","ror":"https://ror.org/01jem9c82"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4313364851.pdf","grobid_xml":"https://content.openalex.org/works/W4313364851.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W128985334","https://openalex.org/W1733554156","https://openalex.org/W1964855214","https://openalex.org/W1971339396","https://openalex.org/W1972875048","https://openalex.org/W1976099203","https://openalex.org/W1981813580","https://openalex.org/W1987547697","https://openalex.org/W2003463914","https://openalex.org/W2005282401","https://openalex.org/W2007075540","https://openalex.org/W2009848646","https://openalex.org/W2011246544","https://openalex.org/W2017407107","https://openalex.org/W2020816856","https://openalex.org/W2021356303","https://openalex.org/W2023697509","https://openalex.org/W2027678871","https://openalex.org/W2028083849","https://openalex.org/W2032962157","https://openalex.org/W2036251513","https://openalex.org/W2036455170","https://openalex.org/W2043746113","https://openalex.org/W2044185873","https://openalex.org/W2055587053","https://openalex.org/W2057965488","https://openalex.org/W2074981222","https://openalex.org/W2078248271","https://openalex.org/W2083006489","https://openalex.org/W2083321361","https://openalex.org/W2090708401","https://openalex.org/W2092167646","https://openalex.org/W2099961908","https://openalex.org/W2102217269","https://openalex.org/W2102963322","https://openalex.org/W2105122253","https://openalex.org/W2106216745","https://openalex.org/W2106237263","https://openalex.org/W2111765516","https://openalex.org/W2112279048","https://openalex.org/W2114281975","https://openalex.org/W2114703458","https://openalex.org/W2126466006","https://openalex.org/W2135754005","https://openalex.org/W2137948699","https://openalex.org/W2143641256","https://openalex.org/W2149553559","https://openalex.org/W2153392439","https://openalex.org/W2158347183","https://openalex.org/W2289294941","https://openalex.org/W2335083463","https://openalex.org/W2578051997","https://openalex.org/W2890430564","https://openalex.org/W2932524182","https://openalex.org/W2950890882","https://openalex.org/W2962088385","https://openalex.org/W3002635945","https://openalex.org/W3007196580","https://openalex.org/W3097258506","https://openalex.org/W3102090129","https://openalex.org/W3123295715","https://openalex.org/W3126539609","https://openalex.org/W3176244407","https://openalex.org/W3198630810","https://openalex.org/W4239050624","https://openalex.org/W4239510810"],"related_works":["https://openalex.org/W2415545834","https://openalex.org/W2069695727","https://openalex.org/W2154204858","https://openalex.org/W1802639773","https://openalex.org/W2118505788","https://openalex.org/W4254166511","https://openalex.org/W3209622820","https://openalex.org/W2150084125","https://openalex.org/W1542823905","https://openalex.org/W1490878237"],"abstract_inverted_index":{"There":[0],"is":[1,40,68,109],"evidence":[2,99],"that":[3,35],"DNA":[4,10,20,146],"breathing":[5],"(spontaneous":[6],"opening":[7],"of":[8,19,41,46,87,93,103,124,129,145],"the":[9,17,28,85,91,101,104,127],"strands)":[11],"plays":[12],"a":[13,79],"relevant":[14],"role":[15],"in":[16,25,27,54,137],"interactions":[18],"with":[21,116],"other":[22],"molecules,":[23],"and":[24,132],"particular":[26],"transcription":[29,55],"process.":[30],"Therefore,":[31],"having":[32],"physical":[33,105,143],"models":[34,136,144],"can":[36,139],"predict":[37,114],"these":[38],"openings":[39],"interest.":[42],"However,":[43],"this":[44,63],"source":[45,74],"information":[47,73],"has":[48],"not":[49],"been":[50],"used":[51,69,77],"before":[52],"either":[53],"start":[56],"sites":[57],"(TSSs)":[58],"or":[59],"promoter":[60],"prediction.":[61],"In":[62,95],"article,":[64],"one":[65],"such":[66],"model":[67],"as":[70,107,147],"an":[71,121],"additional":[72],"that,":[75],"when":[76],"by":[78,111],"machine":[80],"learning":[81],"(ML)":[82],"model,":[83,106],"improves":[84],"results":[86],"current":[88],"methods":[89],"for":[90],"prediction":[92],"TSSs.":[94],"addition,":[96],"we":[97],"provide":[98],"on":[100],"validity":[102],"it":[108],"able":[110],"itself":[112],"to":[113],"TSSs":[115],"high":[117],"accuracy.":[118],"This":[119],"opens":[120],"exciting":[122],"avenue":[123],"research":[125],"at":[126],"intersection":[128],"statistical":[130],"mechanics":[131],"ML,":[133],"where":[134],"ML":[135],"bioinformatics":[138],"be":[140],"improved":[141],"using":[142],"feature":[148],"extractors.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
