{"id":"https://openalex.org/W4310172020","doi":"https://doi.org/10.1186/s12859-022-05068-0","title":"iDMET: network-based approach for integrating differential analysis of cancer metabolomics","display_name":"iDMET: network-based approach for integrating differential analysis of cancer metabolomics","publication_year":2022,"publication_date":"2022-11-28","ids":{"openalex":"https://openalex.org/W4310172020","doi":"https://doi.org/10.1186/s12859-022-05068-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/36443658"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-05068-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-05068-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-05068-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-05068-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050351802","display_name":"Rira Matsuta","orcid":null},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]},{"id":"https://openalex.org/I4210141715","display_name":"Keio University Shonan Fujisawa","ror":"https://ror.org/047khpn70","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210141715"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Rira Matsuta","raw_affiliation_strings":["Human Metabolome Technologies, Inc., 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan","Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0052, Japan","Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, 252-8520, Japan"],"affiliations":[{"raw_affiliation_string":"Human Metabolome Technologies, Inc., 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan","institution_ids":[]},{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0052, Japan","institution_ids":["https://openalex.org/I203951103"]},{"raw_affiliation_string":"Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, 252-8520, Japan","institution_ids":["https://openalex.org/I4210141715"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042088140","display_name":"Hiroyuki Yamamoto","orcid":"https://orcid.org/0000-0002-1344-6525"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hiroyuki Yamamoto","raw_affiliation_strings":["Human Metabolome Technologies, Inc., 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan. h.yama2396@gmail.com","Human Metabolome Technologies, Inc., 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan"],"affiliations":[{"raw_affiliation_string":"Human Metabolome Technologies, Inc., 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan. h.yama2396@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Human Metabolome Technologies, Inc., 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015575713","display_name":"Masaru Tomita","orcid":"https://orcid.org/0000-0003-3423-377X"},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]},{"id":"https://openalex.org/I4210141715","display_name":"Keio University Shonan Fujisawa","ror":"https://ror.org/047khpn70","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210141715"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masaru Tomita","raw_affiliation_strings":["Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0052, Japan","Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, 252-8520, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0052, Japan","institution_ids":["https://openalex.org/I203951103"]},{"raw_affiliation_string":"Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, 252-8520, Japan","institution_ids":["https://openalex.org/I4210141715"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015600215","display_name":"Rintaro Saito","orcid":"https://orcid.org/0000-0001-9084-8045"},"institutions":[{"id":"https://openalex.org/I4210141715","display_name":"Keio University Shonan Fujisawa","ror":"https://ror.org/047khpn70","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210141715"]},{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Rintaro Saito","raw_affiliation_strings":["Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0052, Japan","Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, 252-8520, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0052, Japan","institution_ids":["https://openalex.org/I203951103"]},{"raw_affiliation_string":"Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, 252-8520, Japan","institution_ids":["https://openalex.org/I4210141715"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5050351802"],"corresponding_institution_ids":["https://openalex.org/I203951103","https://openalex.org/I4210141715"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.3466,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.56444521,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"23","issue":"1","first_page":"508","last_page":"508"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.9430873394012451},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5521015524864197},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5347957015037537},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3727192282676697},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3553232252597809},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3186497390270233}],"concepts":[{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.9430873394012451},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5521015524864197},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5347957015037537},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3727192282676697},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3553232252597809},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3186497390270233}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-022-05068-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-05068-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-05068-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36443658","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36443658","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9706903","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9706903","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:850608c5c203452b8df8f783c448aa35","is_oa":true,"landing_page_url":"https://doaj.org/article/850608c5c203452b8df8f783c448aa35","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-20 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-05068-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-05068-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-05068-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1069223013","display_name":null,"funder_award_id":"JSPS KAKENHI","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G3459562248","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4182231772","display_name":"Construction of Pipeline for Integrated Metabolome Analyses of Kidney Disease","funder_award_id":"22K08317","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4636223006","display_name":null,"funder_award_id":"JSPS KAK","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4707703447","display_name":null,"funder_award_id":"JP19K08689","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4827429566","display_name":null,"funder_award_id":"Grant Numbers","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G8430481527","display_name":null,"funder_award_id":"Number","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G8966813624","display_name":"Development of AI for the discovery of novel kidney disease genes using metabolomics and network biology","funder_award_id":"19K08689","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G8992241140","display_name":null,"funder_award_id":"JP20H05743","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320320909","display_name":"Keio University","ror":"https://ror.org/02kn6nx58"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4310172020.pdf","grobid_xml":"https://content.openalex.org/works/W4310172020.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W1599277235","https://openalex.org/W1611854178","https://openalex.org/W1770101577","https://openalex.org/W1829991870","https://openalex.org/W1883301769","https://openalex.org/W1958420503","https://openalex.org/W1960974681","https://openalex.org/W1971606140","https://openalex.org/W1974843841","https://openalex.org/W1978070573","https://openalex.org/W1979649481","https://openalex.org/W1997142695","https://openalex.org/W2000860171","https://openalex.org/W2023535481","https://openalex.org/W2041703764","https://openalex.org/W2059383952","https://openalex.org/W2059549131","https://openalex.org/W2063874036","https://openalex.org/W2064381264","https://openalex.org/W2086281394","https://openalex.org/W2086500586","https://openalex.org/W2100891675","https://openalex.org/W2101098894","https://openalex.org/W2112521228","https://openalex.org/W2113315423","https://openalex.org/W2134058393","https://openalex.org/W2138793275","https://openalex.org/W2145640842","https://openalex.org/W2146280873","https://openalex.org/W2159675211","https://openalex.org/W2171228244","https://openalex.org/W2171681747","https://openalex.org/W2231255609","https://openalex.org/W2234445408","https://openalex.org/W2274696952","https://openalex.org/W2285179499","https://openalex.org/W2302393341","https://openalex.org/W2508195907","https://openalex.org/W2514906610","https://openalex.org/W2591421310","https://openalex.org/W2752940157","https://openalex.org/W2765128094","https://openalex.org/W2786378174","https://openalex.org/W2790580419","https://openalex.org/W2790756470","https://openalex.org/W2793924468","https://openalex.org/W2803664483","https://openalex.org/W2883980984","https://openalex.org/W2898248821","https://openalex.org/W2904346214","https://openalex.org/W2915293971","https://openalex.org/W2924911015","https://openalex.org/W2944723276","https://openalex.org/W2959042990","https://openalex.org/W2982601545","https://openalex.org/W2985897872","https://openalex.org/W2994993297","https://openalex.org/W3001490667","https://openalex.org/W3034283175","https://openalex.org/W3105982350","https://openalex.org/W3160339536","https://openalex.org/W3193578901"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933","https://openalex.org/W2071288609"],"abstract_inverted_index":{"We":[0],"believe":[1],"that":[2],"iDMET":[3],"is":[4],"an":[5],"efficient":[6],"tool":[7],"for":[8],"integrating":[9],"heterogeneous":[10],"metabolomic":[11],"data":[12],"and":[13],"discovering":[14],"novel":[15],"relationships":[16],"between":[17],"biological":[18],"phenomena.":[19]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
