{"id":"https://openalex.org/W4221154868","doi":"https://doi.org/10.1186/s12859-022-04934-1","title":"Mining on Alzheimer\u2019s diseases related knowledge graph to identity potential AD-related semantic triples for drug repurposing","display_name":"Mining on Alzheimer\u2019s diseases related knowledge graph to identity potential AD-related semantic triples for drug repurposing","publication_year":2022,"publication_date":"2022-09-30","ids":{"openalex":"https://openalex.org/W4221154868","doi":"https://doi.org/10.1186/s12859-022-04934-1","pmid":"https://pubmed.ncbi.nlm.nih.gov/36180861"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04934-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04934-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04934-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04934-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014887679","display_name":"Yi Nian","orcid":"https://orcid.org/0000-0002-4387-5574"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi Nian","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin St, Houston, TX, 77030, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin St, Houston, TX, 77030, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060886735","display_name":"Xinyue Hu","orcid":"https://orcid.org/0000-0002-2508-121X"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinyue Hu","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin St, Houston, TX, 77030, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin St, Houston, TX, 77030, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100421963","display_name":"Rui Zhang","orcid":"https://orcid.org/0000-0001-8258-3585"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rui Zhang","raw_affiliation_strings":["Department of Pharmaceutical Care & Health System (PCHS) and the Institute for Health Informatics (IHI), University of Minnesota, 7-115A Weaver-Densford Hall, Minneapolis, MN, 55455, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Care & Health System (PCHS) and the Institute for Health Informatics (IHI), University of Minnesota, 7-115A Weaver-Densford Hall, Minneapolis, MN, 55455, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029362126","display_name":"Jingna Feng","orcid":"https://orcid.org/0000-0002-0434-2513"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jingna Feng","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin St, Houston, TX, 77030, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin St, Houston, TX, 77030, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079546302","display_name":"Jingcheng Du","orcid":"https://orcid.org/0000-0002-0322-4566"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jingcheng Du","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin St, Houston, TX, 77030, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin St, Houston, TX, 77030, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100394163","display_name":"Fang Li","orcid":"https://orcid.org/0000-0001-8865-7717"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fang Li","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin St, Houston, TX, 77030, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin St, Houston, TX, 77030, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086004935","display_name":"Larry Bu","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Larry Bu","raw_affiliation_strings":["University of Maryland School of Medicine, 655 W Baltimore St S, Baltimore, MD, 21201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Maryland School of Medicine, 655 W Baltimore St S, Baltimore, MD, 21201, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107946525","display_name":"Yuji Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuji Zhang","raw_affiliation_strings":["University of Maryland School of Medicine, 655 W Baltimore St S, Baltimore, MD, 21201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Maryland School of Medicine, 655 W Baltimore St S, Baltimore, MD, 21201, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100454438","display_name":"Yong Chen","orcid":"https://orcid.org/0000-0003-0835-0788"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yong Chen","raw_affiliation_strings":["Department of Biostatistics, Epidemiology and Informatics (DBEI), the Perelman School of Medicine, University of Pennsylvania, 602 Blockley Hall, 423 Guardian Drive, Philadelphia, PA, 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Epidemiology and Informatics (DBEI), the Perelman School of Medicine, University of Pennsylvania, 602 Blockley Hall, 423 Guardian Drive, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076058129","display_name":"Cui Tao","orcid":"https://orcid.org/0000-0002-4267-1924"},"institutions":[{"id":"https://openalex.org/I4210159031","display_name":"The University of Texas Health Science Center","ror":"https://ror.org/05cwbxa29","country_code":"US","type":"education","lineage":["https://openalex.org/I4210159031"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Cui Tao","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin St, Houston, TX, 77030, USA. Cui.Tao@uth.tmc.edu","School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin St, Houston, TX, 77030, USA"],"raw_orcid":"https://orcid.org/0000-0002-4267-1924","affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin St, Houston, TX, 77030, USA. Cui.Tao@uth.tmc.edu","institution_ids":["https://openalex.org/I4210159031","https://openalex.org/I919571938"]},{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin St, Houston, TX, 77030, USA","institution_ids":["https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5076058129"],"corresponding_institution_ids":["https://openalex.org/I4210159031","https://openalex.org/I919571938"],"apc_list":{"value":2690,"currency":"USD","value_usd":2690},"apc_paid":{"value":2690,"currency":"USD","value_usd":2690},"fwci":3.595,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.93399047,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"23","issue":"S6","first_page":"407","last_page":"407"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.1590999960899353,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.1590999960899353,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.14489999413490295,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.13570000231266022,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.7645519971847534},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.6745426654815674},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.47139886021614075},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4459015727043152},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4422603249549866},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42557844519615173},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.34498804807662964},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3348926901817322},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3084825277328491},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.21391326189041138},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.07994279265403748}],"concepts":[{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.7645519971847534},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.6745426654815674},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.47139886021614075},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4459015727043152},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4422603249549866},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42557844519615173},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.34498804807662964},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3348926901817322},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3084825277328491},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.21391326189041138},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.07994279265403748},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-022-04934-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04934-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04934-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36180861","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36180861","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:arXiv.org:2202.08712","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2202.08712","pdf_url":"https://arxiv.org/pdf/2202.08712","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:9523633","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9523633","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:5f4972ca00d2486dba39784c91a4000c","is_oa":true,"landing_page_url":"https://doaj.org/article/5f4972ca00d2486dba39784c91a4000c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss S6, Pp 1-15 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04934-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04934-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04934-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.550000011920929,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2635792716","display_name":null,"funder_award_id":"R01AT009457","funder_id":"https://openalex.org/F4320337593","funder_display_name":"National Center for Complementary and Integrative Health"},{"id":"https://openalex.org/G4276235123","display_name":"Dynamic learning for post-vaccine event prediction using temporal information in VAERS","funder_award_id":"5r01ai130460-05","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4926275431","display_name":null,"funder_award_id":"R01AG072799","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G5124643198","display_name":"Facilitate Observational Studies of Alzheimer's Disease and Alzheimer's Disease-Related Dementias Using Ontology and Natural Language Processing","funder_award_id":"7rf1ag072799-02","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5791301197","display_name":"A Translational Informatics Framework to Mine Efficacy and Safety of Dietary Supplements","funder_award_id":"5r01at009457-06","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7533090936","display_name":null,"funder_award_id":"R01AI130460","funder_id":"https://openalex.org/F4320309123","funder_display_name":"Division of Intramural Research, National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G940734088","display_name":null,"funder_award_id":"R01AI130460","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G963715561","display_name":null,"funder_award_id":"RF1AG072799","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"}],"funders":[{"id":"https://openalex.org/F4320309123","display_name":"Division of Intramural Research, National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337593","display_name":"National Center for Complementary and Integrative Health","ror":"https://ror.org/00190t495"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4221154868.pdf","grobid_xml":"https://content.openalex.org/works/W4221154868.grobid-xml"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W374164185","https://openalex.org/W1515492821","https://openalex.org/W2020415425","https://openalex.org/W2029841063","https://openalex.org/W2031715857","https://openalex.org/W2041608466","https://openalex.org/W2047771000","https://openalex.org/W2055651600","https://openalex.org/W2062941476","https://openalex.org/W2067562221","https://openalex.org/W2114781316","https://openalex.org/W2117324900","https://openalex.org/W2117446654","https://openalex.org/W2142321923","https://openalex.org/W2184957013","https://openalex.org/W2194075469","https://openalex.org/W2414779396","https://openalex.org/W2581177196","https://openalex.org/W2618306758","https://openalex.org/W2753199411","https://openalex.org/W2790509166","https://openalex.org/W2795122987","https://openalex.org/W2801935527","https://openalex.org/W2885167667","https://openalex.org/W2896002881","https://openalex.org/W2939519112","https://openalex.org/W2944878260","https://openalex.org/W2947959068","https://openalex.org/W2959720583","https://openalex.org/W2959798450","https://openalex.org/W2966736315","https://openalex.org/W2966864197","https://openalex.org/W2971650681","https://openalex.org/W2980618919","https://openalex.org/W2991326939","https://openalex.org/W2991711545","https://openalex.org/W2996582092","https://openalex.org/W2998922495","https://openalex.org/W2999052201","https://openalex.org/W3004523814","https://openalex.org/W3007352422","https://openalex.org/W3016358231","https://openalex.org/W3024596659","https://openalex.org/W3026298482","https://openalex.org/W3035403290","https://openalex.org/W3093150592","https://openalex.org/W3132689447","https://openalex.org/W3185914370","https://openalex.org/W3195983289","https://openalex.org/W3202273317","https://openalex.org/W3210989246","https://openalex.org/W3212366679","https://openalex.org/W4233912709","https://openalex.org/W4254144118","https://openalex.org/W6600480908"],"related_works":["https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4255531208","https://openalex.org/W4396858017","https://openalex.org/W4400165188","https://openalex.org/W4206422705","https://openalex.org/W4320009247","https://openalex.org/W3186872001"],"abstract_inverted_index":{"BACKGROUND:":[0],"To":[1],"date,":[2],"there":[3],"are":[4],"no":[5],"effective":[6],"treatments":[7],"for":[8,20,128,166],"most":[9,99,167],"neurodegenerative":[10,68],"diseases.":[11],"Knowledge":[12],"graphs":[13],"can":[14,180,194,214],"provide":[15],"comprehensive":[16],"and":[17,23,53,56,74,88,119,201,208,219],"semantic":[18,101],"representation":[19],"heterogeneous":[21],"data,":[22],"have":[24],"been":[25],"successfully":[26],"leveraged":[27,152],"in":[28,59],"many":[29],"biomedical":[30,72],"applications":[31],"including":[32],"drug":[33],"repurposing.":[34],"Our":[35],"objective":[36],"is":[37],"to":[38,45,61,64,94,109,121,156],"construct":[39],"a":[40,85],"knowledge":[41,112,136,211,217],"graph":[42,113,137,191,212],"from":[43],"literature":[44],"study":[46],"the":[47,142,153,159,220],"relations":[48,77],"between":[49,199],"Alzheimer's":[50],"disease":[51],"(AD)":[52],"chemicals,":[54,207],"drugs":[55],"dietary":[57,205],"supplements":[58],"order":[60],"identify":[62],"opportunities":[63],"prevent":[65],"or":[66,131],"delay":[67],"progression.":[69],"We":[70,82,151,162],"collected":[71],"annotations":[73],"extracted":[75],"their":[76],"using":[78],"SemRep":[79],"via":[80],"SemMedDB.":[81],"used":[83,108],"both":[84],"BERT-based":[86],"classifier":[87],"rule-based":[89],"methods":[90],"during":[91],"data":[92],"preprocessing":[93],"exclude":[95],"noise":[96],"while":[97],"preserving":[98],"AD-related":[100],"triples.":[102],"The":[103,210],"1,672,110":[104],"filtered":[105],"triples":[106],"were":[107],"train":[110],"with":[111],"completion":[114,138],"algorithms":[115],"(i.e.,":[116,204],"TransE,":[117],"DistMult,":[118],"ComplEx)":[120],"predict":[122,195],"candidates":[123,170],"that":[124,177,189],"might":[125],"be":[126],"helpful":[127],"AD":[129,200],"treatment":[130],"prevention.":[132],"RESULTS:":[133],"Among":[134],"three":[135],"models,":[139],"TransE":[140],"outperformed":[141],"other":[143,202],"two":[144],"(MR":[145],"=":[146,149],"10.53,":[147],"Hits@1":[148],"0.28).":[150],"time-slicing":[154],"technique":[155],"further":[157],"evaluate":[158],"prediction":[160],"results.":[161],"found":[163],"supporting":[164],"evidence":[165],"highly":[168],"ranked":[169],"predicted":[171],"by":[172],"our":[173,178,190],"model":[174,193],"which":[175],"indicates":[176],"approach":[179],"inform":[181],"reliable":[182,196],"new":[183,197],"knowledge.":[184],"CONCLUSION:":[185],"This":[186],"paper":[187],"shows":[188],"mining":[192],"relationships":[198],"entities":[203],"supplements,":[206],"drugs).":[209],"constructed":[213],"facilitate":[215],"data-driven":[216],"discoveries":[218],"generation":[221],"of":[222],"novel":[223],"hypotheses.":[224]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":6}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
