{"id":"https://openalex.org/W4298005542","doi":"https://doi.org/10.1186/s12859-022-04932-3","title":"RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine","display_name":"RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine","publication_year":2022,"publication_date":"2022-09-29","ids":{"openalex":"https://openalex.org/W4298005542","doi":"https://doi.org/10.1186/s12859-022-04932-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/36175836"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04932-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04932-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04932-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04932-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044669525","display_name":"E. C. Wood","orcid":"https://orcid.org/0000-0003-3890-4040"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"E. C. Wood","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079615149","display_name":"Amy K. Glen","orcid":"https://orcid.org/0000-0003-3691-2290"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amy K. Glen","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA. glena@oregonstate.edu","School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA. glena@oregonstate.edu","institution_ids":["https://openalex.org/I131249849"]},{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058920755","display_name":"Lindsey G. Kvarfordt","orcid":null},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lindsey G. Kvarfordt","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062044463","display_name":"Finn Womack","orcid":"https://orcid.org/0000-0003-0710-5836"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Finn Womack","raw_affiliation_strings":["Computer Science and Engineering, Penn State University, State College, PA, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Penn State University, State College, PA, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018772271","display_name":"Liliana Acevedo","orcid":null},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liliana Acevedo","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063362266","display_name":"Timothy S. Yoon","orcid":null},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy S. Yoon","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004607409","display_name":"Chunyu Ma","orcid":"https://orcid.org/0000-0001-9731-5153"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chunyu Ma","raw_affiliation_strings":["Huck Institutes of the Life Sciences, Penn State University, State College, PA, USA"],"affiliations":[{"raw_affiliation_string":"Huck Institutes of the Life Sciences, Penn State University, State College, PA, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066412621","display_name":"Veronica Flores","orcid":null},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Veronica Flores","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041407852","display_name":"Meghamala Sinha","orcid":"https://orcid.org/0000-0002-6422-3313"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meghamala Sinha","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068857843","display_name":"Yodsawalai Chodpathumwan","orcid":null},"institutions":[{"id":"https://openalex.org/I82828225","display_name":"King Mongkut's University of Technology North Bangkok","ror":"https://ror.org/04fy6jb97","country_code":"TH","type":"education","lineage":["https://openalex.org/I82828225"]}],"countries":["TH"],"is_corresponding":false,"raw_author_name":"Yodsawalai Chodpathumwan","raw_affiliation_strings":["King Mongkut's University of Technology North Bangkok, Bangkok, Thailand"],"affiliations":[{"raw_affiliation_string":"King Mongkut's University of Technology North Bangkok, Bangkok, Thailand","institution_ids":["https://openalex.org/I82828225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008664449","display_name":"Arash Termehchy","orcid":"https://orcid.org/0009-0007-2213-6303"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arash Termehchy","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023566803","display_name":"Jared C. Roach","orcid":"https://orcid.org/0000-0003-4524-0107"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jared C. Roach","raw_affiliation_strings":["Institute for Systems Biology, Seattle, WA, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Systems Biology, Seattle, WA, USA","institution_ids":["https://openalex.org/I3148997608"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079842634","display_name":"Luis Mendoza","orcid":"https://orcid.org/0000-0003-0128-8643"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luis Mendoza","raw_affiliation_strings":["Institute for Systems Biology, Seattle, WA, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Systems Biology, Seattle, WA, USA","institution_ids":["https://openalex.org/I3148997608"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021050539","display_name":"Andrew Hoffman","orcid":"https://orcid.org/0000-0001-6137-4047"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Andrew S. Hoffman","raw_affiliation_strings":["Interdisciplinary Hub for Digitalization and Society, Radboud University, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Hub for Digitalization and Society, Radboud University, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070102563","display_name":"Eric W. Deutsch","orcid":"https://orcid.org/0000-0001-8732-0928"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric W. Deutsch","raw_affiliation_strings":["Institute for Systems Biology, Seattle, WA, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Systems Biology, Seattle, WA, USA","institution_ids":["https://openalex.org/I3148997608"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002668669","display_name":"David Koslicki","orcid":"https://orcid.org/0000-0002-0640-954X"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Koslicki","raw_affiliation_strings":["Computer Science and Engineering, Penn State University, State College, PA, USA","Department of Biology, Penn State University, State College, PA, USA","Huck Institutes of the Life Sciences, Penn State University, State College, PA, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Penn State University, State College, PA, USA","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Department of Biology, Penn State University, State College, PA, USA","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Huck Institutes of the Life Sciences, Penn State University, State College, PA, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091354698","display_name":"Stephen A. Ramsey","orcid":"https://orcid.org/0000-0002-2168-5403"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen A. Ramsey","raw_affiliation_strings":["Department of Biomedical Sciences, Oregon State University, Corvallis, OR, USA","School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]},{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":17,"corresponding_author_ids":["https://openalex.org/A5044669525"],"corresponding_institution_ids":["https://openalex.org/I131249849"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.1268,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.93005578,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"23","issue":"1","first_page":"400","last_page":"400"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.8697220087051392},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5262688398361206},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.49656015634536743},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4624059498310089},{"id":"https://openalex.org/keywords/translational-research","display_name":"Translational research","score":0.4206044673919678},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3322458863258362},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32793036103248596},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.32679301500320435},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21798530220985413},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1881125271320343},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.18391931056976318},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.17140725255012512},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10792064666748047},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08319291472434998},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08253756165504456}],"concepts":[{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.8697220087051392},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5262688398361206},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.49656015634536743},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4624059498310089},{"id":"https://openalex.org/C128544194","wikidata":"https://www.wikidata.org/wiki/Q474859","display_name":"Translational research","level":2,"score":0.4206044673919678},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3322458863258362},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32793036103248596},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.32679301500320435},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21798530220985413},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1881125271320343},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.18391931056976318},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.17140725255012512},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10792064666748047},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08319291472434998},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08253756165504456},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000090963","descriptor_name":"Translational Science, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000090963","descriptor_name":"Translational Science, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000090963","descriptor_name":"Translational Science, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000090963","descriptor_name":"Translational Science, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-022-04932-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04932-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04932-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36175836","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36175836","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:676d08bd8b4148498728c8e5fe06aba5","is_oa":true,"landing_page_url":"https://doaj.org/article/676d08bd8b4148498728c8e5fe06aba5","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-33 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9520835","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9520835","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04932-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04932-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04932-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.49000000953674316}],"awards":[{"id":"https://openalex.org/G5340848570","display_name":null,"funder_award_id":"OT2TR003428","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"}],"funders":[{"id":"https://openalex.org/F4320306087","display_name":"Semiconductor Research Corporation","ror":"https://ror.org/047z4n946"},{"id":"https://openalex.org/F4320310358","display_name":"Achievement Rewards for College Scientists Foundation","ror":"https://ror.org/054awkm93"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4298005542.pdf","grobid_xml":"https://content.openalex.org/works/W4298005542.grobid-xml"},"referenced_works_count":121,"referenced_works":["https://openalex.org/W148893999","https://openalex.org/W1499823815","https://openalex.org/W1509396824","https://openalex.org/W1577783107","https://openalex.org/W1628054318","https://openalex.org/W1680156190","https://openalex.org/W1681831155","https://openalex.org/W1757909678","https://openalex.org/W1934602670","https://openalex.org/W1935434993","https://openalex.org/W1964880353","https://openalex.org/W1971185254","https://openalex.org/W1982390234","https://openalex.org/W1989277387","https://openalex.org/W1997233887","https://openalex.org/W2017426710","https://openalex.org/W2032578329","https://openalex.org/W2036450478","https://openalex.org/W2048164849","https://openalex.org/W2053039860","https://openalex.org/W2053385401","https://openalex.org/W2063028213","https://openalex.org/W2070571588","https://openalex.org/W2075391940","https://openalex.org/W2083578450","https://openalex.org/W2083935441","https://openalex.org/W2085752173","https://openalex.org/W2096525273","https://openalex.org/W2098201295","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2104990432","https://openalex.org/W2108798001","https://openalex.org/W2110417468","https://openalex.org/W2112192177","https://openalex.org/W2117446654","https://openalex.org/W2122087674","https://openalex.org/W2125297759","https://openalex.org/W2125318012","https://openalex.org/W2129370330","https://openalex.org/W2132022337","https://openalex.org/W2137257434","https://openalex.org/W2137518425","https://openalex.org/W2144427809","https://openalex.org/W2147018385","https://openalex.org/W2155478691","https://openalex.org/W2155723007","https://openalex.org/W2155791520","https://openalex.org/W2159482845","https://openalex.org/W2159583324","https://openalex.org/W2165253681","https://openalex.org/W2165681080","https://openalex.org/W2168536291","https://openalex.org/W2170146596","https://openalex.org/W2182274437","https://openalex.org/W2257876130","https://openalex.org/W2270018644","https://openalex.org/W2398915717","https://openalex.org/W2405275595","https://openalex.org/W2508904198","https://openalex.org/W2558643140","https://openalex.org/W2587129898","https://openalex.org/W2610569243","https://openalex.org/W2728003555","https://openalex.org/W2767683865","https://openalex.org/W2786122698","https://openalex.org/W2799059383","https://openalex.org/W2894374770","https://openalex.org/W2898440040","https://openalex.org/W2900090807","https://openalex.org/W2910227336","https://openalex.org/W2946378529","https://openalex.org/W2949311246","https://openalex.org/W2952880826","https://openalex.org/W2968353232","https://openalex.org/W2969718750","https://openalex.org/W2973062138","https://openalex.org/W2979585142","https://openalex.org/W2983166786","https://openalex.org/W2996370819","https://openalex.org/W3011511325","https://openalex.org/W3022051079","https://openalex.org/W3023112361","https://openalex.org/W3036397942","https://openalex.org/W3046828865","https://openalex.org/W3048090444","https://openalex.org/W3051688780","https://openalex.org/W3086867004","https://openalex.org/W3091851287","https://openalex.org/W3092371057","https://openalex.org/W3095380161","https://openalex.org/W3096828292","https://openalex.org/W3097145107","https://openalex.org/W3102245839","https://openalex.org/W3104826446","https://openalex.org/W3107626709","https://openalex.org/W3111301126","https://openalex.org/W3112376646","https://openalex.org/W3112600195","https://openalex.org/W3130274004","https://openalex.org/W3158391439","https://openalex.org/W3159726507","https://openalex.org/W3170771812","https://openalex.org/W3176163250","https://openalex.org/W3176466485","https://openalex.org/W3203678399","https://openalex.org/W4206037526","https://openalex.org/W4212919921","https://openalex.org/W4231254854","https://openalex.org/W4233698560","https://openalex.org/W4237358891","https://openalex.org/W4251386234","https://openalex.org/W4281704579","https://openalex.org/W4292063883","https://openalex.org/W4294216483","https://openalex.org/W4319460354","https://openalex.org/W6892765822","https://openalex.org/W6893702592","https://openalex.org/W6893817895","https://openalex.org/W6903584426","https://openalex.org/W6949900734"],"related_works":["https://openalex.org/W2017899917","https://openalex.org/W2080571363","https://openalex.org/W2481322495","https://openalex.org/W2898682754","https://openalex.org/W2889841093","https://openalex.org/W2151082141","https://openalex.org/W2365236913","https://openalex.org/W3194374240","https://openalex.org/W2993861175","https://openalex.org/W1524296664"],"abstract_inverted_index":{"RTX-KG2":[0,35,51],"is":[1,36,52],"the":[2,26],"first":[3],"knowledge":[4,17,21],"graph":[5,22],"that":[6,23],"integrates":[7],"UMLS,":[8],"SemMedDB,":[9],"ChEMBL,":[10],"DrugBank,":[11],"Reactome,":[12],"SMPDB,":[13],"and":[14,33],"64":[15],"additional":[16],"sources":[18],"within":[19],"a":[20],"conforms":[24],"to":[25,49],"Biolink":[27],"standard":[28],"for":[29,39],"its":[30,42],"semantic":[31],"layer":[32],"schema.":[34],"publicly":[37,53],"available":[38,54],"querying":[40],"via":[41],"API":[43],"at":[44,55],"arax.rtx.ai/api/rtxkg2/v1.2/openapi.json":[45],".":[46,57],"The":[47],"code":[48],"build":[50],"github:RTXteam/RTX-KG2":[56]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":5}],"updated_date":"2026-04-03T22:45:19.894376","created_date":"2025-10-10T00:00:00"}
