{"id":"https://openalex.org/W4296998856","doi":"https://doi.org/10.1186/s12859-022-04922-5","title":"Local data commons: the sleeping beauty in the community of data commons","display_name":"Local data commons: the sleeping beauty in the community of data commons","publication_year":2022,"publication_date":"2022-09-23","ids":{"openalex":"https://openalex.org/W4296998856","doi":"https://doi.org/10.1186/s12859-022-04922-5","pmid":"https://pubmed.ncbi.nlm.nih.gov/36151511"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04922-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04922-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04922-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04922-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018395068","display_name":"Jong Cheol Jeong","orcid":"https://orcid.org/0000-0002-5024-2927"},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]},{"id":"https://openalex.org/I2802239656","display_name":"Markey Cancer Center","ror":"https://ror.org/01dhvva97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285210727","https://openalex.org/I2802239656"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jong Cheol Jeong","raw_affiliation_strings":["Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA. JongCheol.Jeong@uky.edu","Division of Biomedical Informatics, College of Medicine, University of Kentucky, Lexington, KY, USA. JongCheol.Jeong@uky.edu","Division of Biomedical Informatics, College of Medicine, University of Kentucky, Lexington, KY, USA"],"raw_orcid":"https://orcid.org/0000-0002-5024-2927","affiliations":[{"raw_affiliation_string":"Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA. JongCheol.Jeong@uky.edu","institution_ids":["https://openalex.org/I2802239656"]},{"raw_affiliation_string":"Division of Biomedical Informatics, College of Medicine, University of Kentucky, Lexington, KY, USA. JongCheol.Jeong@uky.edu","institution_ids":["https://openalex.org/I143302722"]},{"raw_affiliation_string":"Division of Biomedical Informatics, College of Medicine, University of Kentucky, Lexington, KY, USA","institution_ids":["https://openalex.org/I143302722"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061589935","display_name":"Isaac Hands","orcid":null},"institutions":[{"id":"https://openalex.org/I2802239656","display_name":"Markey Cancer Center","ror":"https://ror.org/01dhvva97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285210727","https://openalex.org/I2802239656"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Isaac Hands","raw_affiliation_strings":["Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","Kentucky Cancer Registry, Lexington, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]},{"raw_affiliation_string":"Kentucky Cancer Registry, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016348831","display_name":"Jill Kolesar","orcid":"https://orcid.org/0000-0003-1802-6439"},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jill M. Kolesar","raw_affiliation_strings":["Department of Pharmacy Practice and Science, College of Pharmacy, University of Kentucky, Lexington, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacy Practice and Science, College of Pharmacy, University of Kentucky, Lexington, KY, USA","institution_ids":["https://openalex.org/I143302722"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038036181","display_name":"Mahadev Rao","orcid":"https://orcid.org/0000-0003-3322-5399"},"institutions":[{"id":"https://openalex.org/I164861460","display_name":"Manipal Academy of Higher Education","ror":"https://ror.org/02xzytt36","country_code":"IN","type":"education","lineage":["https://openalex.org/I164861460"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Mahadev Rao","raw_affiliation_strings":["Department of Pharmacy Practice, Center for Translational Research, Manipal College of Pharmaceutical Sciences, Manipal Academy of Higher Education, Manipal, Karnataka, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacy Practice, Center for Translational Research, Manipal College of Pharmaceutical Sciences, Manipal Academy of Higher Education, Manipal, Karnataka, India","institution_ids":["https://openalex.org/I164861460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075857943","display_name":"Bront Davis","orcid":null},"institutions":[{"id":"https://openalex.org/I2802239656","display_name":"Markey Cancer Center","ror":"https://ror.org/01dhvva97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285210727","https://openalex.org/I2802239656"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bront Davis","raw_affiliation_strings":["Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","Kentucky Cancer Registry, Lexington, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]},{"raw_affiliation_string":"Kentucky Cancer Registry, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088525246","display_name":"York Dobyns","orcid":null},"institutions":[{"id":"https://openalex.org/I2802239656","display_name":"Markey Cancer Center","ror":"https://ror.org/01dhvva97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285210727","https://openalex.org/I2802239656"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"York Dobyns","raw_affiliation_strings":["Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","Kentucky Cancer Registry, Lexington, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]},{"raw_affiliation_string":"Kentucky Cancer Registry, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073852380","display_name":"Joseph Hurt-Mueller","orcid":null},"institutions":[{"id":"https://openalex.org/I2802239656","display_name":"Markey Cancer Center","ror":"https://ror.org/01dhvva97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285210727","https://openalex.org/I2802239656"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph Hurt-Mueller","raw_affiliation_strings":["Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","Kentucky Cancer Registry, Lexington, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]},{"raw_affiliation_string":"Kentucky Cancer Registry, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047040400","display_name":"Justin S. Levens","orcid":null},"institutions":[{"id":"https://openalex.org/I2802239656","display_name":"Markey Cancer Center","ror":"https://ror.org/01dhvva97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285210727","https://openalex.org/I2802239656"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin Levens","raw_affiliation_strings":["Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","Kentucky Cancer Registry, Lexington, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]},{"raw_affiliation_string":"Kentucky Cancer Registry, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007340461","display_name":"Jenny Gregory","orcid":"https://orcid.org/0000-0001-5935-7408"},"institutions":[{"id":"https://openalex.org/I2802239656","display_name":"Markey Cancer Center","ror":"https://ror.org/01dhvva97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285210727","https://openalex.org/I2802239656"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jenny Gregory","raw_affiliation_strings":["Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","Kentucky Cancer Registry, Lexington, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]},{"raw_affiliation_string":"Kentucky Cancer Registry, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060048919","display_name":"John A. Williams","orcid":"https://orcid.org/0000-0002-0357-5454"},"institutions":[{"id":"https://openalex.org/I2802239656","display_name":"Markey Cancer Center","ror":"https://ror.org/01dhvva97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285210727","https://openalex.org/I2802239656"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Williams","raw_affiliation_strings":["Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","Kentucky Cancer Registry, Lexington, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]},{"raw_affiliation_string":"Kentucky Cancer Registry, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088990736","display_name":"Lisa Witt","orcid":null},"institutions":[{"id":"https://openalex.org/I2802239656","display_name":"Markey Cancer Center","ror":"https://ror.org/01dhvva97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285210727","https://openalex.org/I2802239656"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lisa Witt","raw_affiliation_strings":["Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","Kentucky Cancer Registry, Lexington, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]},{"raw_affiliation_string":"Kentucky Cancer Registry, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100656611","display_name":"Eun Mi Kim","orcid":"https://orcid.org/0000-0003-3376-2995"},"institutions":[{"id":"https://openalex.org/I110325482","display_name":"Eastern Kentucky University","ror":"https://ror.org/012xks909","country_code":"US","type":"education","lineage":["https://openalex.org/I110325482"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eun Mi Kim","raw_affiliation_strings":["Department of Computer Science, Eastern Kentucky University, Richmond, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Eastern Kentucky University, Richmond, KY, USA","institution_ids":["https://openalex.org/I110325482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002335545","display_name":"Carlee Burton","orcid":null},"institutions":[{"id":"https://openalex.org/I2802239656","display_name":"Markey Cancer Center","ror":"https://ror.org/01dhvva97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285210727","https://openalex.org/I2802239656"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carlee Burton","raw_affiliation_strings":["Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008935326","display_name":"Amir A. Elbiheary","orcid":null},"institutions":[{"id":"https://openalex.org/I2802239656","display_name":"Markey Cancer Center","ror":"https://ror.org/01dhvva97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285210727","https://openalex.org/I2802239656"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amir A. Elbiheary","raw_affiliation_strings":["Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004857227","display_name":"Mingguang Chang","orcid":null},"institutions":[{"id":"https://openalex.org/I2802239656","display_name":"Markey Cancer Center","ror":"https://ror.org/01dhvva97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285210727","https://openalex.org/I2802239656"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mingguang Chang","raw_affiliation_strings":["Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044901389","display_name":"Eric B. Durbin","orcid":"https://orcid.org/0000-0002-5600-7645"},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]},{"id":"https://openalex.org/I2802239656","display_name":"Markey Cancer Center","ror":"https://ror.org/01dhvva97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285210727","https://openalex.org/I2802239656"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric B. Durbin","raw_affiliation_strings":["Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA. ericd@kcr.uky.edu","Division of Biomedical Informatics, College of Medicine, University of Kentucky, Lexington, KY, USA. ericd@kcr.uky.edu","Kentucky Cancer Registry, Lexington, KY, USA. ericd@kcr.uky.edu","Kentucky Cancer Registry, Lexington, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Informatics Shared Resource Facility, Markey Cancer Center, Lexington, KY, USA. ericd@kcr.uky.edu","institution_ids":["https://openalex.org/I2802239656"]},{"raw_affiliation_string":"Division of Biomedical Informatics, College of Medicine, University of Kentucky, Lexington, KY, USA. ericd@kcr.uky.edu","institution_ids":["https://openalex.org/I143302722"]},{"raw_affiliation_string":"Kentucky Cancer Registry, Lexington, KY, USA. ericd@kcr.uky.edu","institution_ids":["https://openalex.org/I2802239656"]},{"raw_affiliation_string":"Kentucky Cancer Registry, Lexington, KY, USA","institution_ids":["https://openalex.org/I2802239656"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":16,"corresponding_author_ids":["https://openalex.org/A5018395068"],"corresponding_institution_ids":["https://openalex.org/I143302722","https://openalex.org/I2802239656"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.319,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.63251293,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"23","issue":"S12","first_page":"386","last_page":"386"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.4844000041484833,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.4844000041484833,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.23479999601840973,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.09480000287294388,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/harmonization","display_name":"Harmonization","score":0.7569198608398438},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.6245146989822388},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5411298871040344},{"id":"https://openalex.org/keywords/data-quality","display_name":"Data quality","score":0.517050564289093},{"id":"https://openalex.org/keywords/commons","display_name":"Commons","score":0.5015237331390381},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48597538471221924},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.46306318044662476},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.46156564354896545},{"id":"https://openalex.org/keywords/data-access","display_name":"Data access","score":0.4227573573589325},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.41984841227531433},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3635914921760559},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.33308112621307373},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.32829007506370544},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2112729847431183},{"id":"https://openalex.org/keywords/marketing","display_name":"Marketing","score":0.1290278434753418},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.10928434133529663}],"concepts":[{"id":"https://openalex.org/C2779962950","wikidata":"https://www.wikidata.org/wiki/Q5659376","display_name":"Harmonization","level":2,"score":0.7569198608398438},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.6245146989822388},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5411298871040344},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.517050564289093},{"id":"https://openalex.org/C49427245","wikidata":"https://www.wikidata.org/wiki/Q9828451","display_name":"Commons","level":2,"score":0.5015237331390381},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48597538471221924},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.46306318044662476},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.46156564354896545},{"id":"https://openalex.org/C47487241","wikidata":"https://www.wikidata.org/wiki/Q5227230","display_name":"Data access","level":2,"score":0.4227573573589325},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.41984841227531433},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3635914921760559},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.33308112621307373},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.32829007506370544},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2112729847431183},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.1290278434753418},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.10928434133529663},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003906","descriptor_name":"Developing Countries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003906","descriptor_name":"Developing Countries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003906","descriptor_name":"Developing Countries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-022-04922-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04922-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04922-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36151511","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36151511","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:2a2f955f93714d75948f46b7604e3e44","is_oa":false,"landing_page_url":"https://doaj.org/article/2a2f955f93714d75948f46b7604e3e44","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss S12, Pp 1-21 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9502580","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9502580","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04922-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04922-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04922-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6399999856948853,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G2526390019","display_name":null,"funder_award_id":"P30 CA177558","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7269738326","display_name":null,"funder_award_id":"P30CA177558","funder_id":"https://openalex.org/F4320309825","funder_display_name":"University of Kentucky"}],"funders":[{"id":"https://openalex.org/F4320309825","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4296998856.pdf","grobid_xml":"https://content.openalex.org/works/W4296998856.grobid-xml"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W165348403","https://openalex.org/W1977032720","https://openalex.org/W2020541351","https://openalex.org/W2029052036","https://openalex.org/W2079300981","https://openalex.org/W2093274439","https://openalex.org/W2096192437","https://openalex.org/W2102729801","https://openalex.org/W2104846587","https://openalex.org/W2119180969","https://openalex.org/W2128016314","https://openalex.org/W2149441684","https://openalex.org/W2157365260","https://openalex.org/W2162376722","https://openalex.org/W2286261512","https://openalex.org/W2302501749","https://openalex.org/W2318224129","https://openalex.org/W2336067426","https://openalex.org/W2406250479","https://openalex.org/W2417483443","https://openalex.org/W2511397642","https://openalex.org/W2514554267","https://openalex.org/W2521492299","https://openalex.org/W2557953210","https://openalex.org/W2562330244","https://openalex.org/W2573966335","https://openalex.org/W2577994754","https://openalex.org/W2596994218","https://openalex.org/W2612519453","https://openalex.org/W2614443510","https://openalex.org/W2623802615","https://openalex.org/W2750588340","https://openalex.org/W2765635284","https://openalex.org/W2781608882","https://openalex.org/W2783418022","https://openalex.org/W2792728862","https://openalex.org/W2794804602","https://openalex.org/W2883544453","https://openalex.org/W2891260744","https://openalex.org/W2898671507","https://openalex.org/W2905285619","https://openalex.org/W2919720720","https://openalex.org/W2921650138","https://openalex.org/W2921879097","https://openalex.org/W2946384906","https://openalex.org/W2949829455","https://openalex.org/W2951635356","https://openalex.org/W2951725468","https://openalex.org/W2959872456","https://openalex.org/W2973113902","https://openalex.org/W2984098329","https://openalex.org/W2990435446","https://openalex.org/W3005127469","https://openalex.org/W3010685050","https://openalex.org/W3029661147","https://openalex.org/W3033196316","https://openalex.org/W3034521001","https://openalex.org/W3096568637","https://openalex.org/W3119731794","https://openalex.org/W3133283981","https://openalex.org/W4205170775","https://openalex.org/W4205930639","https://openalex.org/W4213108508","https://openalex.org/W4235739337","https://openalex.org/W6738337739"],"related_works":["https://openalex.org/W2414507368","https://openalex.org/W1504819070","https://openalex.org/W2166798126","https://openalex.org/W4389950265","https://openalex.org/W2394072345","https://openalex.org/W4322757579","https://openalex.org/W2805259584","https://openalex.org/W1501592941","https://openalex.org/W4237172707","https://openalex.org/W2421443948"],"abstract_inverted_index":{"BACKGROUND:":[0],"Public":[1],"Data":[2],"Commons":[3],"(PDC)":[4],"have":[5,35,87,272],"been":[6,36,274],"highlighted":[7],"in":[8,38,90,331],"the":[9,22,39,55,61,67,77,80,110,181,187,203,277,327,335,348],"scientific":[10,40],"literature":[11],"for":[12,125,175,237,283],"their":[13,165,291,315,338],"capacity":[14],"to":[15,54,63,76,264,276,293,303,310,342,344],"collect":[16,64],"and":[17,65,93,123,127,135,167,198,208,219,244,266,299,313,341],"harmonize":[18],"big":[19],"data.":[20,81],"On":[21],"other":[23],"hand,":[24],"local":[25],"data":[26,71,84,106,129,213,215,217,220,234,238,268,281,297],"commons":[27,130],"(LDC),":[28],"located":[29],"within":[30,72],"an":[31,73,248,261],"institution":[32],"or":[33,179],"organization,":[34,74],"underrepresented":[37],"literature,":[41],"even":[42],"though":[43],"they":[44,102,271],"are":[45,152,161,193,260],"a":[46,83,98,232,304,345],"critical":[47],"part":[48],"of":[49,57,79,100,105,156,183,191,200,205,225,279,306,337,350],"research":[50],"infrastructure.":[51],"Being":[52],"closest":[53,75],"sources":[56,78],"data,":[58,95],"LDCs":[59,86,259,289,336],"provide":[60,136],"ability":[62],"maintain":[66],"most":[68],"up-to-date,":[69],"high-quality":[70],"As":[82],"provider,":[85],"many":[88,118,288],"challenges":[89],"both":[91,242],"collecting":[92],"standardizing":[94],"moreover,":[96],"as":[97,173],"consumer":[99],"PDC,":[101],"face":[103],"problems":[104],"harmonization":[107,112,239],"stemming":[108],"from":[109],"monolithic":[111,228],"pipeline":[113],"designs":[114],"commonly":[115,226],"adapted":[116],"by":[117],"PDCs.":[119],"Unfortunately,":[120],"existing":[121,184],"guidelines":[122,174],"resources":[124],"building":[126,176],"maintaining":[128],"exclusively":[131],"focus":[132],"on":[133,140,146,164,308],"PDC":[134],"very":[137],"little":[138],"information":[139,307],"LDC.":[141,185,351],"RESULTS:":[142],"This":[143],"article":[144],"focuses":[145],"four":[147],"important":[148],"observations.":[149],"First,":[150],"there":[151],"three":[153],"different":[154],"types":[155],"LDC":[157,178,192,250],"service":[158],"models":[159],"that":[160,240,322],"defined":[162],"based":[163],"roles":[166],"requirements.":[168],"These":[169],"can":[170],"be":[171,326],"used":[172],"new":[177,233],"enhancing":[180],"services":[182,190,316],"Second,":[186],"seven":[188],"core":[189],"discussed,":[194],"including":[195],"cohort":[196],"identification":[197],"facilitation":[199],"genomic":[201],"sequencing,":[202],"management":[204],"molecular":[206],"reports":[207],"associated":[209],"infrastructure,":[210],"quality":[211,269],"control,":[212],"harmonization,":[214],"integration,":[216],"sharing,":[218],"access":[221],"control.":[222],"Third,":[223],"instead":[224],"developed":[227],"systems,":[229],"we":[230],"propose":[231],"sharing":[235],"method":[236],"combines":[241],"divide-and-conquer":[243],"bottom-up":[245],"approaches.":[246],"Finally,":[247],"end-to-end":[249],"implementation":[251],"is":[252],"introduced":[253],"with":[254],"real-world":[255],"examples.":[256],"CONCLUSIONS:":[257],"Although":[258],"optimal":[262],"place":[263],"identify":[265],"address":[267],"issues,":[270],"traditionally":[273],"relegated":[275],"role":[278],"passive":[280],"provider":[282],"much":[284],"larger":[285],"PDC.":[286],"Indeed,":[287],"limit":[290],"functions":[292],"only":[294],"conducting":[295],"routine":[296],"storage":[298],"transmission":[300],"tasks":[301],"due":[302],"lack":[305],"how":[309],"design,":[311],"develop,":[312],"improve":[314],"using":[317],"limited":[318],"resources.":[319],"We":[320],"hope":[321],"this":[323],"work":[324],"will":[325],"first":[328],"small":[329],"step":[330],"raising":[332],"awareness":[333],"among":[334],"expanded":[339],"utility":[340],"publicize":[343],"wider":[346],"audience":[347],"importance":[349]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
