{"id":"https://openalex.org/W4293104925","doi":"https://doi.org/10.1186/s12859-022-04893-7","title":"Deconvolution of tumor composition using partially available DNA methylation data","display_name":"Deconvolution of tumor composition using partially available DNA methylation data","publication_year":2022,"publication_date":"2022-08-24","ids":{"openalex":"https://openalex.org/W4293104925","doi":"https://doi.org/10.1186/s12859-022-04893-7","pmid":"https://pubmed.ncbi.nlm.nih.gov/36002797"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04893-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04893-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04893-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04893-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035400195","display_name":"Dingqin He","orcid":null},"institutions":[{"id":"https://openalex.org/I44675526","display_name":"Shanghai Ocean University","ror":"https://ror.org/04n40zv07","country_code":"CN","type":"education","lineage":["https://openalex.org/I44675526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dingqin He","raw_affiliation_strings":["College of Information Technology, Shanghai Ocean University, Hucheng Ring Road, Shanghai, China","Key Laboratory of Fisheries Information Ministry of Agriculture, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Technology, Shanghai Ocean University, Hucheng Ring Road, Shanghai, China","institution_ids":["https://openalex.org/I44675526"]},{"raw_affiliation_string":"Key Laboratory of Fisheries Information Ministry of Agriculture, Shanghai, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100423292","display_name":"Ming Chen","orcid":"https://orcid.org/0000-0002-9677-1699"},"institutions":[{"id":"https://openalex.org/I44675526","display_name":"Shanghai Ocean University","ror":"https://ror.org/04n40zv07","country_code":"CN","type":"education","lineage":["https://openalex.org/I44675526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming Chen","raw_affiliation_strings":["College of Information Technology, Shanghai Ocean University, Hucheng Ring Road, Shanghai, China","Key Laboratory of Fisheries Information Ministry of Agriculture, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Technology, Shanghai Ocean University, Hucheng Ring Road, Shanghai, China","institution_ids":["https://openalex.org/I44675526"]},{"raw_affiliation_string":"Key Laboratory of Fisheries Information Ministry of Agriculture, Shanghai, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111433001","display_name":"Wenjuan Wang","orcid":"https://orcid.org/0000-0001-9180-2823"},"institutions":[{"id":"https://openalex.org/I44675526","display_name":"Shanghai Ocean University","ror":"https://ror.org/04n40zv07","country_code":"CN","type":"education","lineage":["https://openalex.org/I44675526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjuan Wang","raw_affiliation_strings":["College of Information Technology, Shanghai Ocean University, Hucheng Ring Road, Shanghai, China","Key Laboratory of Fisheries Information Ministry of Agriculture, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Technology, Shanghai Ocean University, Hucheng Ring Road, Shanghai, China","institution_ids":["https://openalex.org/I44675526"]},{"raw_affiliation_string":"Key Laboratory of Fisheries Information Ministry of Agriculture, Shanghai, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071614332","display_name":"Chunhui Song","orcid":"https://orcid.org/0000-0002-6736-0874"},"institutions":[{"id":"https://openalex.org/I44675526","display_name":"Shanghai Ocean University","ror":"https://ror.org/04n40zv07","country_code":"CN","type":"education","lineage":["https://openalex.org/I44675526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunhui Song","raw_affiliation_strings":["College of Information Technology, Shanghai Ocean University, Hucheng Ring Road, Shanghai, China","Key Laboratory of Fisheries Information Ministry of Agriculture, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Technology, Shanghai Ocean University, Hucheng Ring Road, Shanghai, China","institution_ids":["https://openalex.org/I44675526"]},{"raw_affiliation_string":"Key Laboratory of Fisheries Information Ministry of Agriculture, Shanghai, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061679044","display_name":"Yufang Qin","orcid":"https://orcid.org/0000-0002-8906-8727"},"institutions":[{"id":"https://openalex.org/I4210134538","display_name":"Ministry of Agriculture","ror":"https://ror.org/044d6nj38","country_code":"FJ","type":"government","lineage":["https://openalex.org/I4210134538"]},{"id":"https://openalex.org/I44675526","display_name":"Shanghai Ocean University","ror":"https://ror.org/04n40zv07","country_code":"CN","type":"education","lineage":["https://openalex.org/I44675526"]}],"countries":["CN","FJ"],"is_corresponding":true,"raw_author_name":"Yufang Qin","raw_affiliation_strings":["College of Information Technology, Shanghai Ocean University, Hucheng Ring Road, Shanghai, China. yfqin@shou.edu.cn","Key Laboratory of Fisheries Information Ministry of Agriculture, Shanghai, China. yfqin@shou.edu.cn","College of Information Technology, Shanghai Ocean University, Hucheng Ring Road, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Technology, Shanghai Ocean University, Hucheng Ring Road, Shanghai, China. yfqin@shou.edu.cn","institution_ids":["https://openalex.org/I44675526"]},{"raw_affiliation_string":"Key Laboratory of Fisheries Information Ministry of Agriculture, Shanghai, China. yfqin@shou.edu.cn","institution_ids":["https://openalex.org/I4210134538"]},{"raw_affiliation_string":"College of Information Technology, Shanghai Ocean University, Hucheng Ring Road, Shanghai, China","institution_ids":["https://openalex.org/I44675526"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5061679044"],"corresponding_institution_ids":["https://openalex.org/I4210134538","https://openalex.org/I44675526"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.6064,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.64415188,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"23","issue":"1","first_page":"355","last_page":"355"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.5683000087738037,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.5683000087738037,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.09200000017881393,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.051600001752376556,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deconvolution","display_name":"Deconvolution","score":0.7000285387039185},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.6810339689254761},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5506033301353455},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4816209673881531},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46200722455978394},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.43325304985046387},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4126221537590027},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.3594440817832947},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24783948063850403},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2164306342601776},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12140542268753052},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11990872025489807},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09648463129997253}],"concepts":[{"id":"https://openalex.org/C174576160","wikidata":"https://www.wikidata.org/wiki/Q1183700","display_name":"Deconvolution","level":2,"score":0.7000285387039185},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.6810339689254761},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5506033301353455},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4816209673881531},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46200722455978394},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.43325304985046387},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4126221537590027},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3594440817832947},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24783948063850403},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2164306342601776},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12140542268753052},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11990872025489807},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09648463129997253},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-022-04893-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04893-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04893-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36002797","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36002797","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:32e1a3c309514a94a619163638938aaa","is_oa":true,"landing_page_url":"https://doaj.org/article/32e1a3c309514a94a619163638938aaa","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-16 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9400327","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9400327","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04893-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04893-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04893-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","score":0.6200000047683716,"id":"https://metadata.un.org/sdg/16"}],"awards":[{"id":"https://openalex.org/G2644716166","display_name":null,"funder_award_id":"61702325","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7327839319","display_name":null,"funder_award_id":"20dz1203800","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4293104925.pdf","grobid_xml":"https://content.openalex.org/works/W4293104925.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1963970354","https://openalex.org/W1967220865","https://openalex.org/W1985987855","https://openalex.org/W2003398735","https://openalex.org/W2005334224","https://openalex.org/W2011988545","https://openalex.org/W2020541351","https://openalex.org/W2049624178","https://openalex.org/W2054282473","https://openalex.org/W2060469376","https://openalex.org/W2092075890","https://openalex.org/W2096715243","https://openalex.org/W2102212449","https://openalex.org/W2103843690","https://openalex.org/W2104950932","https://openalex.org/W2119192314","https://openalex.org/W2120246444","https://openalex.org/W2126307722","https://openalex.org/W2130523009","https://openalex.org/W2169556367","https://openalex.org/W2170324063","https://openalex.org/W2309685155","https://openalex.org/W2507880739","https://openalex.org/W2553677484","https://openalex.org/W2600132724","https://openalex.org/W2600929284","https://openalex.org/W2747545374","https://openalex.org/W2767572999","https://openalex.org/W2777639606","https://openalex.org/W2790756470","https://openalex.org/W2791483720","https://openalex.org/W2885720383","https://openalex.org/W2902059429","https://openalex.org/W2942871705","https://openalex.org/W2949158283","https://openalex.org/W2950086703","https://openalex.org/W2952240309","https://openalex.org/W2968984059","https://openalex.org/W2969721824","https://openalex.org/W3002763297","https://openalex.org/W3014913757","https://openalex.org/W3039902577","https://openalex.org/W3046260387","https://openalex.org/W3105982350","https://openalex.org/W3107086528","https://openalex.org/W3118577024","https://openalex.org/W3133563137","https://openalex.org/W3192263903","https://openalex.org/W4205804426","https://openalex.org/W4221133807"],"related_works":["https://openalex.org/W4251527294","https://openalex.org/W2902329290","https://openalex.org/W2052355316","https://openalex.org/W2046964473","https://openalex.org/W2107880877","https://openalex.org/W2151182744","https://openalex.org/W2024490794","https://openalex.org/W2221018455","https://openalex.org/W2054863651","https://openalex.org/W1998349112"],"abstract_inverted_index":{"BACKGROUND:":[0],"Deciphering":[1],"proportions":[2,125,161,197],"of":[3,17,23,30,54,57,104,107,126,136,162,171,182,218,239],"constitutional":[4],"cell":[5,32,109,128,138,164,173,196],"types":[6,110,129,139,165,174,181],"in":[7,111,245],"tumor":[8,18,82],"tissues":[9],"is":[10,243,248],"a":[11,78,105],"crucial":[12],"step":[13],"for":[14],"the":[15,21,28,43,51,108,112,124,133,153,160,168,194,216,236],"analysis":[16],"heterogeneity":[19],"and":[20,45,117,152,166,207,225,247],"prediction":[22],"response":[24],"to":[25,64,68,80,122,179,234],"immunotherapy.":[26,241],"In":[27,72],"process":[29],"measuring":[31],"population":[33],"proportions,":[34],"traditional":[35],"experimental":[36],"methods":[37,67,147],"have":[38],"been":[39],"greatly":[40],"hampered":[41],"by":[42,199],"cost":[44],"extensive":[46],"dropout":[47],"events.":[48],"At":[49],"present,":[50],"public":[52],"availability":[53],"large":[55],"amounts":[56],"DNA":[58,87,101,221],"methylation":[59,88,102,134,169,222],"data":[60,224],"makes":[61],"it":[62],"possible":[63],"use":[65],"computational":[66],"predict":[69],"proportions.":[70],"RESULTS:":[71],"this":[73],"paper,":[74],"we":[75,191],"proposed":[76],"PRMeth,":[77],"method":[79,213],"deconvolve":[81],"mixtures":[83,114],"using":[84],"partially":[85],"available":[86,250],"data.":[89],"By":[90],"adopting":[91],"an":[92],"iteratively":[93],"optimized":[94],"non-negative":[95],"matrix":[96],"factorization":[97],"framework,":[98],"PRMeth":[99,143,157,178,200,242],"took":[100],"profiles":[103,135,170],"portion":[106],"tissue":[113],"(including":[115],"blood":[116],"solid":[118],"tumors)":[119],"as":[120,130,132],"input":[121],"estimate":[123],"all":[127,163],"well":[131],"unknown":[137,172],"simultaneously.":[140],"We":[141],"compared":[142],"with":[144,204],"five":[145],"different":[146],"through":[148],"three":[149],"benchmark":[150],"datasets":[151],"results":[154],"show":[155],"that":[156,193],"could":[158],"infer":[159],"recover":[167],"effectively.":[175],"Then,":[176],"applying":[177],"four":[180],"tumors":[183],"from":[184,251],"The":[185],"Cancer":[186],"Genome":[187],"Atlas":[188],"(TCGA)":[189],"database,":[190],"found":[192],"immune":[195],"estimated":[198],"were":[201],"largely":[202],"consistent":[203],"previous":[205],"studies":[206],"met":[208],"biological":[209],"significance.":[210],"CONCLUSIONS:":[211],"Our":[212],"can":[214],"circumvent":[215],"difficulty":[217],"obtaining":[219],"complete":[220],"reference":[223],"obtain":[226],"satisfactory":[227],"deconvolution":[228],"accuracy,":[229],"which":[230],"will":[231],"be":[232],"conducive":[233],"exploring":[235],"new":[237],"directions":[238],"cancer":[240],"implemented":[244],"R":[246],"freely":[249],"GitHub":[252],"(":[253],"https://github.com/hedingqin/PRMeth":[254],").":[255]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
