{"id":"https://openalex.org/W4292363467","doi":"https://doi.org/10.1186/s12859-022-04889-3","title":"FFP: joint Fast Fourier transform and fractal dimension in amino acid property-aware phylogenetic analysis","display_name":"FFP: joint Fast Fourier transform and fractal dimension in amino acid property-aware phylogenetic analysis","publication_year":2022,"publication_date":"2022-08-19","ids":{"openalex":"https://openalex.org/W4292363467","doi":"https://doi.org/10.1186/s12859-022-04889-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/35986255"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04889-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04889-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04889-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04889-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100318303","display_name":"Wei Li","orcid":"https://orcid.org/0000-0002-6204-3335"},"institutions":[{"id":"https://openalex.org/I150807315","display_name":"Guangxi University","ror":"https://ror.org/02c9qn167","country_code":"CN","type":"education","lineage":["https://openalex.org/I150807315"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Li","raw_affiliation_strings":["School of Computer, Electronics and Information, Guangxi University, Nanning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Electronics and Information, Guangxi University, Nanning, China","institution_ids":["https://openalex.org/I150807315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008154497","display_name":"Lina Yang","orcid":"https://orcid.org/0000-0003-3489-1887"},"institutions":[{"id":"https://openalex.org/I150807315","display_name":"Guangxi University","ror":"https://ror.org/02c9qn167","country_code":"CN","type":"education","lineage":["https://openalex.org/I150807315"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lina Yang","raw_affiliation_strings":["School of Computer, Electronics and Information, Guangxi University, Nanning, China. lnyang@gxu.edu.cn","School of Computer, Electronics and Information, Guangxi University, Nanning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Electronics and Information, Guangxi University, Nanning, China. lnyang@gxu.edu.cn","institution_ids":["https://openalex.org/I150807315"]},{"raw_affiliation_string":"School of Computer, Electronics and Information, Guangxi University, Nanning, China","institution_ids":["https://openalex.org/I150807315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018741551","display_name":"Yu Qiu","orcid":"https://orcid.org/0000-0002-9586-7875"},"institutions":[{"id":"https://openalex.org/I150807315","display_name":"Guangxi University","ror":"https://ror.org/02c9qn167","country_code":"CN","type":"education","lineage":["https://openalex.org/I150807315"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Qiu","raw_affiliation_strings":["School of Computer, Electronics and Information, Guangxi University, Nanning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Electronics and Information, Guangxi University, Nanning, China","institution_ids":["https://openalex.org/I150807315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025439231","display_name":"Yujian Yuan","orcid":"https://orcid.org/0009-0000-0974-6851"},"institutions":[{"id":"https://openalex.org/I150807315","display_name":"Guangxi University","ror":"https://ror.org/02c9qn167","country_code":"CN","type":"education","lineage":["https://openalex.org/I150807315"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yujian Yuan","raw_affiliation_strings":["School of Computer, Electronics and Information, Guangxi University, Nanning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Electronics and Information, Guangxi University, Nanning, China","institution_ids":["https://openalex.org/I150807315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084735024","display_name":"Xichun Li","orcid":"https://orcid.org/0000-0003-4621-367X"},"institutions":[{"id":"https://openalex.org/I4210118063","display_name":"Guangxi Normal University for Nationalities","ror":"https://ror.org/02cejc171","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210118063"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xichun Li","raw_affiliation_strings":["Guangxi Normal University for Nationalities, Chongzuo, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangxi Normal University for Nationalities, Chongzuo, China","institution_ids":["https://openalex.org/I4210118063"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101751718","display_name":"Zuqiang Meng","orcid":"https://orcid.org/0000-0002-5221-8883"},"institutions":[{"id":"https://openalex.org/I150807315","display_name":"Guangxi University","ror":"https://ror.org/02c9qn167","country_code":"CN","type":"education","lineage":["https://openalex.org/I150807315"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zuqiang Meng","raw_affiliation_strings":["School of Computer, Electronics and Information, Guangxi University, Nanning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Electronics and Information, Guangxi University, Nanning, China","institution_ids":["https://openalex.org/I150807315"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5008154497"],"corresponding_institution_ids":["https://openalex.org/I150807315"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7796,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.69165957,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"23","issue":"1","first_page":"347","last_page":"347"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9426000118255615,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9426000118255615,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.021400000900030136,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.019700000062584877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7968069911003113},{"id":"https://openalex.org/keywords/fast-fourier-transform","display_name":"Fast Fourier transform","score":0.6836634874343872},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.5489851832389832},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.4392392039299011},{"id":"https://openalex.org/keywords/fractal-dimension","display_name":"Fractal dimension","score":0.4227641224861145},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4224127233028412},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.4172114431858063},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.41511186957359314},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.4048488736152649},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.39875325560569763},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36645978689193726},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3580217957496643},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.35515809059143066},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.33263635635375977},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3065355718135834},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28542953729629517},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2685467302799225},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21742349863052368},{"id":"https://openalex.org/keywords/fractal","display_name":"Fractal","score":0.21475493907928467},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11069908738136292},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.0709121823310852}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7968069911003113},{"id":"https://openalex.org/C75172450","wikidata":"https://www.wikidata.org/wiki/Q623950","display_name":"Fast Fourier transform","level":2,"score":0.6836634874343872},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.5489851832389832},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.4392392039299011},{"id":"https://openalex.org/C26546657","wikidata":"https://www.wikidata.org/wiki/Q1412452","display_name":"Fractal dimension","level":3,"score":0.4227641224861145},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4224127233028412},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.4172114431858063},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.41511186957359314},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4048488736152649},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.39875325560569763},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36645978689193726},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3580217957496643},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.35515809059143066},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33263635635375977},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3065355718135834},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28542953729629517},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2685467302799225},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21742349863052368},{"id":"https://openalex.org/C40636538","wikidata":"https://www.wikidata.org/wiki/Q81392","display_name":"Fractal","level":2,"score":0.21475493907928467},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11069908738136292},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0709121823310852}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005583","descriptor_name":"Fourier Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005583","descriptor_name":"Fourier Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005583","descriptor_name":"Fourier Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017709","descriptor_name":"Fractals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017709","descriptor_name":"Fractals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017709","descriptor_name":"Fractals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-022-04889-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04889-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04889-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35986255","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35986255","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:0e1a8eb55df94e7b871bcdb772783e29","is_oa":true,"landing_page_url":"https://doaj.org/article/0e1a8eb55df94e7b871bcdb772783e29","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-21 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9392226","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9392226","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04889-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04889-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04889-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5699999928474426,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G4998603626","display_name":null,"funder_award_id":"61862005","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5216923561","display_name":null,"funder_award_id":"61762009","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4292363467.pdf","grobid_xml":"https://content.openalex.org/works/W4292363467.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W806664756","https://openalex.org/W1541678779","https://openalex.org/W1969266020","https://openalex.org/W1969287319","https://openalex.org/W1994233698","https://openalex.org/W2005820721","https://openalex.org/W2023097561","https://openalex.org/W2029406027","https://openalex.org/W2031931664","https://openalex.org/W2043165415","https://openalex.org/W2055043387","https://openalex.org/W2065590615","https://openalex.org/W2077715995","https://openalex.org/W2103383866","https://openalex.org/W2106882534","https://openalex.org/W2133644696","https://openalex.org/W2134065368","https://openalex.org/W2136299394","https://openalex.org/W2141476155","https://openalex.org/W2156851899","https://openalex.org/W2169163271","https://openalex.org/W2216040507","https://openalex.org/W2255773492","https://openalex.org/W2340868178","https://openalex.org/W2342431583","https://openalex.org/W2559777429","https://openalex.org/W2559904083","https://openalex.org/W2606434372","https://openalex.org/W2755603372","https://openalex.org/W2793434846","https://openalex.org/W2799524357","https://openalex.org/W2806047468","https://openalex.org/W2909240409","https://openalex.org/W2916704833","https://openalex.org/W2916837122","https://openalex.org/W2937978758","https://openalex.org/W2940438782","https://openalex.org/W2951862746","https://openalex.org/W2958584774","https://openalex.org/W2963826443","https://openalex.org/W2997624599","https://openalex.org/W3025857586","https://openalex.org/W3082709982","https://openalex.org/W3082975070","https://openalex.org/W3083912409","https://openalex.org/W3101098302","https://openalex.org/W3150220312","https://openalex.org/W3164662270","https://openalex.org/W3196731440"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W2162923930","https://openalex.org/W1482324242","https://openalex.org/W2133116680","https://openalex.org/W2029514038","https://openalex.org/W1525517788","https://openalex.org/W2804480386","https://openalex.org/W3186624150","https://openalex.org/W65850283"],"abstract_inverted_index":{"BACKGROUND:":[0],"Amino":[1],"acid":[2,16],"property-aware":[3],"phylogenetic":[4,10,167,176],"analysis":[5,11,177],"(APPA)":[6],"refers":[7],"to":[8,68,96,128,197,224],"the":[9,31,57,101,104,111,130,137,143,148,156,160,166,184,193,215],"method":[12,73,84],"based":[13],"on":[14,100,178],"amino":[15,109],"property":[17],"encoding,":[18],"which":[19,114,146],"is":[20,65,94,140,169,173,222],"used":[21,95,127],"for":[22,53,74,175],"understanding":[23],"and":[24,38,50,90,117,124,208],"inferring":[25],"evolutionary":[26],"relationships":[27],"between":[28,152,158],"species":[29],"from":[30,142],"molecular":[32],"perspective.":[33],"Fast":[34],"Fourier":[35],"transform":[36],"(FFT)":[37],"Higuchi's":[39],"fractal":[40],"dimension":[41],"(HFD)":[42],"have":[43],"excellent":[44],"performance":[45],"in":[46,206,228],"describing":[47],"sequences'":[48],"structural":[49],"complexity":[51],"information":[52],"APPA.":[54],"However,":[55],"with":[56,192],"exponential":[58],"growth":[59],"of":[60,103,108,119,133,150,181],"protein":[61,75,98,120,182,216],"sequence":[62,76,217],"data,":[63],"it":[64,87,221],"very":[66],"important":[67,105],"develop":[69],"a":[70,82,226],"reliable":[71],"APPA":[72,207],"analysis.":[77],"RESULTS:":[78],"Consequently,":[79],"we":[80],"propose":[81],"new":[83],"named":[85],"FFP,":[86],"joints":[88],"FFT":[89,123],"HFD.":[91],"Firstly,":[92],"FFP":[93,172,202],"encode":[97],"sequences":[99],"basis":[102],"physicochemical":[106],"properties":[107],"acids,":[110],"dissociation":[112],"constant,":[113],"determines":[115],"acidity":[116],"basicity":[118],"molecules.":[121],"Secondly,":[122],"HFD":[125],"are":[126,186],"generate":[129],"feature":[131],"vectors":[132],"encoded":[134],"sequences,":[135,183],"whereafter,":[136],"distance":[138,157],"matrix":[139],"calculated":[141],"cosine":[144],"function,":[145],"describes":[147],"degree":[149],"similarity":[151,218],"species.":[153],"The":[154],"smaller":[155],"them,":[159],"more":[161,198],"similar":[162],"they":[163],"are.":[164],"Finally,":[165],"tree":[168],"constructed.":[170],"When":[171],"tested":[174],"four":[179],"groups":[180],"results":[185],"obviously":[187],"better":[188],"than":[189,199],"other":[190],"comparisons,":[191],"highest":[194],"accuracy":[195,205],"up":[196],"97%.":[200],"CONCLUSION:":[201],"has":[203],"higher":[204],"multi-sequence":[209],"alignment.":[210],"It":[211],"also":[212],"can":[213],"measure":[214],"effectively.":[219],"And":[220],"hoped":[223],"play":[225],"role":[227],"APPA's":[229],"related":[230],"research.":[231]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}